Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0006757

Physical Location & Seq

Genomic Coordinates Forward (+)

591775 .. 592820

Gene Structure 1046 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g00870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGATCCCAGTTCATCACTCCATCAGATCCTTATCATTGTTCTCCTTTAGATTACTAATTTTGGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGACAAACATTTGAGATGAAGATCATTAAGAATTCGATCCTAGCACTTTTCTTTCTTCTTCCTTTTGTAGTGGCTGACCTTAGGGTTAATTTCTATACTGCTACCTGCCCCCGAGCTGAATCAATCATACGTCAACTTGTGCAGAAACGGTTTGCAACTGATTCATCTATCACTGGGGCCTTGCTTCGCATGCATTTCCATGACTGCTTTGTTCGGGGTTGTGATGCATCCATACTTATAGATTCAACCAAAAATAAGTCATCTGAAAAATCGGCAGCGCCAAACTTGACTGTACGAGGATACGAGCTTATTGACGAGATCAAGAAAAGCCTAGAGGCTGCATGCCCTTCAACTGTATCCTGTGCCGATATTGTAACCCTAGCAACCCGGGATTCAGTGGTTCTTGCAGGGGGGCCAAACTATGCTGCTCCAACAGGACGCCGTGACGGGCTCGTATCAAACCCTCACGACGTTAACTTGCCTGGTCCATCATTTTCAGTATCTCAGGCATTGCGATCTTTCACTGTCAAAGGGATGACCCTAAATGACATGGTGACCCTATTGGGTGCACACACGGTTGGTTTTGCCCACTGTAATTTTTTCCAAGATAGGCTTTCAAATTTTCAAGGGTCAAGATCTCCTGATCCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

249

Amino Acids

27.59

Weight (kDa)

9.27

Isoelectric Point (pI)

43.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	75 - 242	8.5e-65	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006757)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03670 AT4G26010 AT4G26010 AT5G17820 AT5G17820
fragaria_vesca	FvH4_2g05370
malus_domestica	MD14G1010300.v1.1
prunus_persica	Prupe.7G016500_v2.0.a1
pyrus_communis	pycom14g00870
rosa_chinensis	RchiOBHm_Chr3g0495941 RchiOBHm_Chr3g0495951
rosa_laevigata	RLG00000022577
rosa_multiflora	Rmu_sc0000334.1_g000004 Rmu_sc0000334.1_g000021 Rmu_sc0003613.1_g000015
rosa_roxburghii	Rroxscaffold_6G00389830 Rroxscaffold_6G00389880
rosa_rugosa	Rorug03G0277900
rosa_samantha	Rh3AG325200 Rh3BG361300 Rh3BG361500 Rh3CG357500 Rh3CG357600 Rh3DG360700
rosa_wichuraiana	Rw3G028410 Rw3G028430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	209
AclWI	GGATC	3 cut(s)	21, 127, 734
AcsI	RAATTY	2 cut(s)	127, 715
AcyI	GRCGYC	1 cut(s)	535
AfaI	GTAC	1 cut(s)	390
AgsI	TTSAA	4 cut(s)	342, 447, 714, 722
AjnI	CCWGG	1 cut(s)	577
AluBI	AGCT	2 cut(s)	212, 403
AluI	AGCT	2 cut(s)	212, 403
Alw21I	GWGCWC	1 cut(s)	667
Alw26I	GTCTC	1 cut(s)	91
Alw44I	GTGCAC	1 cut(s)	663
AlwI	GGATC	3 cut(s)	21, 127, 734
Ama87I	CYCGRG	2 cut(s)	207, 483
AoxI	GGCC	2 cut(s)	273, 509
ApaLI	GTGCAC	1 cut(s)	663
ApeKI	GCWGC	3 cut(s)	371, 434, 521
ApoI	RAATTY	2 cut(s)	127, 715
AspLEI	GCGC	1 cut(s)	376
AspS9I	GGNCC	3 cut(s)	273, 509, 581
AsuC2I	CCSGG	2 cut(s)	484, 485
AsuHPI	GGTGA	1 cut(s)	661
AvaI	CYCGRG	2 cut(s)	207, 483
AvaII	GGWCC	1 cut(s)	581
AxyI	CCTNAGG	1 cut(s)	176
BaeGI	GKGCMC	1 cut(s)	667
BanII	GRGCYC	1 cut(s)	549
Bbv12I	GWGCWC	1 cut(s)	667
BbvI	GCAGC	3 cut(s)	383, 421, 508
BccI	CCATC	2 cut(s)	29, 592
BceAI	ACGGC	1 cut(s)	522
BciT130I	CCWGG	1 cut(s)	579
BciVI	GTATCC	2 cut(s)	389, 463
BcnI	CCSGG	2 cut(s)	484, 485
BcoDI	GTCTC	1 cut(s)	91
BfaI	CTAG	3 cut(s)	137, 428, 476
BfoI	RGCGCY	1 cut(s)	377
BfuAI	ACCTGC	1 cut(s)	209
BfuI	GTATCC	2 cut(s)	389, 463
BglII	AGATCT	1 cut(s)	731
BisI	GCNGC	3 cut(s)	372, 435, 522
BlsI	GCNGC	3 cut(s)	373, 436, 523
Bme1390I	CCNGG	3 cut(s)	484, 485, 579
Bme18I	GGWCC	1 cut(s)	581
BmeT110I	CYCGRG	2 cut(s)	207, 483
BmgT120I	GGNCC	3 cut(s)	273, 509, 581
BmiI	GGNNCC	2 cut(s)	274, 510
BmrFI	CCNGG	3 cut(s)	484, 485, 579
BmrI	ACTGGG	1 cut(s)	279
BmsI	GCATC	2 cut(s)	310, 332
BmuI	ACTGGG	1 cut(s)	279
BpuMI	CCSGG	2 cut(s)	484, 485
BsaBI	GATNNNNATC	2 cut(s)	31, 116
BsaHI	GRCGYC	1 cut(s)	535
BsaJI	CCNNGG	1 cut(s)	483
Bse1I	ACTGG	2 cut(s)	8, 274
Bse21I	CCTNAGG	1 cut(s)	176
Bse3DI	GCAATG	1 cut(s)	605
Bse8I	GATNNNNATC	2 cut(s)	31, 116
BseBI	CCWGG	1 cut(s)	579
BseDI	CCNNGG	1 cut(s)	483
BseGI	GGATG	2 cut(s)	323, 636
BseJI	GATNNNNATC	2 cut(s)	31, 116
BseMI	GCAATG	1 cut(s)	605
BseMII	CTCAG	1 cut(s)	614
BseNI	ACTGG	2 cut(s)	8, 274
BseSI	GKGCMC	1 cut(s)	667
BseXI	GCAGC	3 cut(s)	383, 421, 508
BsgI	GTGCAG	1 cut(s)	257
BshFI	GGCC	2 cut(s)	275, 511
BsiHKAI	GWGCWC	1 cut(s)	667
BsiHKCI	CYCGRG	2 cut(s)	207, 483
BsiSI	CCGG	1 cut(s)	484
BsmAI	GTCTC	1 cut(s)	91
BsnI	GGCC	2 cut(s)	275, 511
BsoBI	CYCGRG	2 cut(s)	207, 483
Bsp1286I	GDGCHC	2 cut(s)	549, 667
Bsp143I	GATC	8 cut(s)	3, 26, 117, 132, 414, 611, 731, 739
BspANI	GGCC	2 cut(s)	275, 511
BspCNI	CTCAG	1 cut(s)	613
BspLI	GGNNCC	2 cut(s)	274, 510
BspMI	ACCTGC	1 cut(s)	209
BspPI	GGATC	3 cut(s)	21, 127, 734
BsrDI	GCAATG	1 cut(s)	605
BsrI	ACTGG	2 cut(s)	8, 274
BssECI	CCNNGG	1 cut(s)	483
BssMI	GATC	8 cut(s)	3, 26, 117, 132, 414, 611, 731, 739
BssNI	GRCGYC	1 cut(s)	535
Bst2UI	CCWGG	1 cut(s)	579
Bst4CI	ACNGT	6 cut(s)	246, 388, 451, 622, 673, 689
BstACI	GRCGYC	1 cut(s)	535
BstC8I	GCNNGC	2 cut(s)	287, 439
BstDEI	CTNAG	2 cut(s)	176, 600
BstEII	GGTNACC	1 cut(s)	649
BstF5I	GGATG	2 cut(s)	323, 636
BstH2I	RGCGCY	1 cut(s)	377
BstHHI	GCGC	1 cut(s)	376
BstKTI	GATC	8 cut(s)	6, 29, 120, 135, 417, 614, 734, 742
BstMAI	GTCTC	1 cut(s)	91
BstMBI	GATC	8 cut(s)	3, 26, 117, 132, 414, 611, 731, 739
BstMWI	GCNNNNNNNGC	1 cut(s)	286
BstNI	CCWGG	1 cut(s)	579
BstNSI	RCATGY	2 cut(s)	289, 441
BstPI	GGTNACC	1 cut(s)	649
BstSCI	CCNGG	3 cut(s)	482, 483, 577
BstSLI	GKGCMC	1 cut(s)	667
BstV1I	GCAGC	3 cut(s)	383, 421, 508
BstX2I	RGATCY	2 cut(s)	26, 731
BstYI	RGATCY	2 cut(s)	26, 731
Bsu36I	CCTNAGG	1 cut(s)	176
BsuI	GTATCC	2 cut(s)	389, 463
BsuRI	GGCC	2 cut(s)	275, 511
BtsCI	GGATG	2 cut(s)	323, 636
BtsIMutI	CAGTG	4 cut(s)	267, 498, 618, 685
BveI	ACCTGC	1 cut(s)	209
Cac8I	GCNNGC	2 cut(s)	287, 439
CfoI	GCGC	1 cut(s)	376
Cfr13I	GGNCC	3 cut(s)	273, 509, 581
Cfr9I	CCCGGG	1 cut(s)	483
CseI	GACGC	1 cut(s)	543
Csp6I	GTAC	1 cut(s)	389
CviAII	CATG	4 cut(s)	286, 296, 438, 646
CviJI	RGCY	9 cut(s)	170, 212, 275, 403, 426, 434, 511, 547, 709
CviKI_1	RGCY	9 cut(s)	170, 212, 275, 403, 426, 434, 511, 547, 709
CviQI	GTAC	1 cut(s)	389
DdeI	CTNAG	2 cut(s)	176, 600
DpnI	GATC	8 cut(s)	5, 28, 119, 134, 416, 613, 733, 741
DpnII	GATC	8 cut(s)	3, 26, 117, 132, 414, 611, 731, 739
Eco24I	GRGCYC	1 cut(s)	549
Eco47I	GGWCC	1 cut(s)	581
Eco81I	CCTNAGG	1 cut(s)	176
Eco88I	CYCGRG	2 cut(s)	207, 483
Eco91I	GGTNACC	1 cut(s)	649
EcoO109I	RGGNCCY	1 cut(s)	273
EcoO65I	GGTNACC	1 cut(s)	649
EcoRI	GAATTC	1 cut(s)	127
EcoRII	CCWGG	1 cut(s)	577
EcoT22I	ATGCAT	2 cut(s)	291, 325
EcoT38I	GRGCYC	1 cut(s)	549
FaeI	CATG	4 cut(s)	289, 299, 441, 649
FaiI	YATR	9 cut(s)	192, 224, 287, 297, 329, 335, 439, 519, 647
FalI	AAGNNNNNCTT	2 cut(s)	693, 725
FatI	CATG	4 cut(s)	285, 295, 437, 645
Fnu4HI	GCNGC	3 cut(s)	372, 435, 522
FokI	GGATG	2 cut(s)	310, 643
FriOI	GRGCYC	1 cut(s)	549
Fsp4HI	GCNGC	3 cut(s)	372, 435, 522
FspBI	CTAG	3 cut(s)	137, 428, 476
GlaI	GCGC	1 cut(s)	375
GluI	GCNGC	3 cut(s)	372, 435, 522
HaeII	RGCGCY	1 cut(s)	377
HaeIII	GGCC	2 cut(s)	275, 511
HapII	CCGG	1 cut(s)	484
HgaI	GACGC	1 cut(s)	543
HhaI	GCGC	1 cut(s)	376
Hin1I	GRCGYC	1 cut(s)	535
Hin1II	CATG	4 cut(s)	289, 299, 441, 649
Hin6I	GCGC	1 cut(s)	374
HinP1I	GCGC	1 cut(s)	374
HincII	GTYRAC	2 cut(s)	230, 571
HindII	GTYRAC	2 cut(s)	230, 571
HinfI	GANTC	4 cut(s)	215, 257, 338, 488
HpaI	GTTAAC	1 cut(s)	571
HpaII	CCGG	1 cut(s)	484
HphI	GGTGA	1 cut(s)	661
Hpy166II	GTNNAC	3 cut(s)	230, 571, 665
Hpy188I	TCNGA	2 cut(s)	26, 361
Hpy188III	TCNNGA	4 cut(s)	418, 563, 729, 737
Hpy8I	GTNNAC	3 cut(s)	230, 571, 665
Hpy99I	CGWCG	1 cut(s)	569
HpyAV	CCTTC	1 cut(s)	453
HpyCH4III	ACNGT	6 cut(s)	246, 388, 451, 622, 673, 689
HpyCH4IV	ACGT	2 cut(s)	226, 567
HpyCH4V	TGCA	7 cut(s)	238, 251, 289, 323, 437, 503, 665
HpyF10VI	GCNNNNNNNGC	1 cut(s)	286
HpyF3I	CTNAG	2 cut(s)	176, 600
HpySE526I	ACGT	2 cut(s)	226, 567
Hsp92I	GRCGYC	1 cut(s)	535
Hsp92II	CATG	4 cut(s)	289, 299, 441, 649
HspAI	GCGC	1 cut(s)	374
KspAI	GTTAAC	1 cut(s)	571
Kzo9I	GATC	8 cut(s)	3, 26, 117, 132, 414, 611, 731, 739
LmnI	GCTCC	1 cut(s)	529
Lsp1109I	GCAGC	3 cut(s)	383, 421, 508
LweI	GCATC	2 cut(s)	310, 332
MaeI	CTAG	3 cut(s)	137, 428, 476
MaeII	ACGT	2 cut(s)	226, 567
MaeIII	GTNAC	3 cut(s)	469, 539, 649
MalI	GATC	8 cut(s)	5, 28, 119, 134, 416, 613, 733, 741
MboI	GATC	8 cut(s)	3, 26, 117, 132, 414, 611, 731, 739
MboII	GAAGA	3 cut(s)	127, 143, 146
MflI	RGATCY	2 cut(s)	26, 731
MhlI	GDGCHC	2 cut(s)	549, 667
MluCI	AATT	5 cut(s)	57, 127, 184, 691, 715
MmeI	TCCRAC	1 cut(s)	551
MnlI	CCTC	3 cut(s)	386, 424, 570
Mph1103I	ATGCAT	2 cut(s)	291, 325
MseI	TTAA	3 cut(s)	123, 183, 570
MslI	CAYNNNNRTG	1 cut(s)	294
MspI	CCGG	1 cut(s)	484
MspR9I	CCNGG	3 cut(s)	484, 485, 579
MvaI	CCWGG	1 cut(s)	579
MwoI	GCNNNNNNNGC	1 cut(s)	286
NciI	CCSGG	2 cut(s)	484, 485
NdeII	GATC	8 cut(s)	3, 26, 117, 132, 414, 611, 731, 739
NlaIII	CATG	4 cut(s)	289, 299, 441, 649
NlaIV	GGNNCC	2 cut(s)	274, 510
NmuCI	GTSAC	2 cut(s)	539, 649
NsiI	ATGCAT	2 cut(s)	291, 325
NspI	RCATGY	2 cut(s)	289, 441
PaeI	GCATGC	2 cut(s)	289, 441
PfeI	GAWTC	4 cut(s)	215, 257, 338, 488
PkrI	GCNGC	3 cut(s)	373, 436, 523
Psp6I	CCWGG	1 cut(s)	577
PspEI	GGTNACC	1 cut(s)	649
PspGI	CCWGG	1 cut(s)	577
PspN4I	GGNNCC	2 cut(s)	274, 510
PspPI	GGNCC	3 cut(s)	273, 509, 581
PsuI	RGATCY	2 cut(s)	26, 731
RsaI	GTAC	1 cut(s)	390
RsaNI	GTAC	1 cut(s)	389
RseI	CAYNNNNRTG	1 cut(s)	294
SaqAI	TTAA	3 cut(s)	123, 183, 570
SatI	GCNGC	3 cut(s)	372, 435, 522
Sau3AI	GATC	8 cut(s)	3, 26, 117, 132, 414, 611, 731, 739
Sau96I	GGNCC	3 cut(s)	273, 509, 581
ScrFI	CCNGG	3 cut(s)	484, 485, 579
SduI	GDGCHC	2 cut(s)	549, 667
SetI	ASST	6 cut(s)	177, 203, 214, 229, 405, 570
SfaNI	GCATC	2 cut(s)	310, 332
SinI	GGWCC	1 cut(s)	581
SmaI	CCCGGG	1 cut(s)	485
SmiMI	CAYNNNNRTG	1 cut(s)	294
SphI	GCATGC	2 cut(s)	289, 441
Sse9I	AATT	5 cut(s)	57, 127, 184, 691, 715
SspMI	CTAG	3 cut(s)	137, 428, 476
StyD4I	CCNGG	3 cut(s)	482, 483, 577
TaaI	ACNGT	6 cut(s)	246, 388, 451, 622, 673, 689
TaiI	ACGT	2 cut(s)	229, 570
TaqI	TCGA	1 cut(s)	131
TasI	AATT	5 cut(s)	57, 127, 184, 691, 715
TfiI	GAWTC	4 cut(s)	215, 257, 338, 488
Tru1I	TTAA	3 cut(s)	123, 183, 570
Tru9I	TTAA	3 cut(s)	123, 183, 570
TscAI	CASTG	4 cut(s)	274, 498, 625, 692
TseFI	GTSAC	2 cut(s)	539, 649
TseI	GCWGC	3 cut(s)	371, 434, 521
Tsp45I	GTSAC	2 cut(s)	539, 649
TspDTI	ATGAA	2 cut(s)	128, 249
TspGWI	ACGGA	1 cut(s)	732
TspMI	CCCGGG	1 cut(s)	483
TspRI	CASTG	4 cut(s)	274, 498, 625, 692
VneI	GTGCAC	1 cut(s)	663
VpaK11BI	GGWCC	1 cut(s)	581
XapI	RAATTY	2 cut(s)	127, 715
XceI	RCATGY	2 cut(s)	289, 441
XmaI	CCCGGG	1 cut(s)	483
XspI	CTAG	3 cut(s)	137, 428, 476
Zsp2I	ATGCAT	2 cut(s)	291, 325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.