Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012754

Physical Location & Seq

Genomic Coordinates Forward (+)

5987187 .. 5988885

Gene Structure 1699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G18100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGAAGCTCCTAGAGGAAATCTGAGAGCGGTGGCTCTTATCGCCGGCGATAACAACGTCCGAGGCTGTCTTCAATTCGTACAAGACATTTCCGGAACTACTCATGTCACCGGGAAGATCTCAGGACTCTCTCCTGGCTTCCATGGATTTCATATTCACTCTTTTGGTGATACCACAAATGGCTGCATCTCTACTGGACCTCACTTCAATCCATTAAATCGAGTTCACGGGCCACCGAACGAGGAAGAGCGTCATGCTGGCGATTTGGGTAACATTCTTGCAGGATCAAACGGTGTTGCTGAAATCTTAATCAAAGACAAACATATACCGCTTAGTGGGCAGTATTCCATACTCGGGAGGGCGGTTGTTGTGCATGCGGATCCTGATGACCTTGGGAAAGGAGGGCACAAGCTTAGCAAATCAACTGGAAACGCAGGCTCGAGAGTTGGATGTGGTATCATCGGACTTCAATCATCTGCGGATGCTAAACTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000303 GO:0000305 GO:0001101 GO:0003674 GO:0003824 GO:0004784 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0006801 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0008270 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009636 GO:0009642 GO:0009644 GO:0009651 GO:0009987 GO:0010035 GO:0010193 GO:0010224 GO:0016209 GO:0016491 GO:0016721 GO:0019430 GO:0033554 GO:0034599 GO:0034614 GO:0034644 GO:0035690 GO:0042221 GO:0042493 GO:0042579 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0046872 GO:0046914 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071214 GO:0071229 GO:0071236 GO:0071450 GO:0071451 GO:0071457 GO:0071470 GO:0071472 GO:0071478 GO:0071482 GO:0071484 GO:0071486 GO:0071493 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:0104004 GO:1901700 GO:1901701 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04146 ko04213 ko05014 ko05016 ko05020 map04146 map04213 map05014 map05016 map05020

Pfam Domains

Protein Families

Sod_Cu

Protein Analysis

164

Amino Acids

16.94

Weight (kDa)

7.16

Isoelectric Point (pI)

29.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sod_Cu	PF00080	20 - 133	2.8e-40	Copper/zinc superoxide dismutase (SODC)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012754)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18100 AT5G18100
fragaria_vesca	FvH4_1g28280
malus_domestica	MD12G1004800.v1.1 MD14G1003300.v1.1
prunus_persica	Prupe.7G005300_v2.0.a1 Prupe.7G005300_v2.0.a1 Prupe.7G005300_v2.0.a1
pyrus_communis	pycom12g00390 pycom14g00120
rosa_chinensis	RchiOBHm_Chr3g0496871
rosa_multiflora	Rmu_sc0001438.1_g000032
rosa_roxburghii	Rroxscaffold_6G00388610
rosa_samantha	Rh3AG332200 Rh3BG368900 Rh3CG365300 Rh3DG368200
rosa_wichuraiana	Rw3G029120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	29
AccIII	TCCGGA	1 cut(s)	92
AciI	CCGC	5 cut(s)	29, 329, 362, 377, 479
AclWI	GGATC	3 cut(s)	292, 374, 387
AfaI	GTAC	1 cut(s)	81
AfiI	CCNNNNNNNGG	2 cut(s)	335, 354
AgsI	TTSAA	3 cut(s)	74, 208, 470
AjnI	CCWGG	1 cut(s)	133
AluBI	AGCT	2 cut(s)	8, 412
AluI	AGCT	2 cut(s)	8, 412
AlwI	GGATC	3 cut(s)	292, 374, 387
Ama87I	CYCGRG	2 cut(s)	353, 439
Aor13HI	TCCGGA	1 cut(s)	92
AoxI	GGCC	1 cut(s)	230
ApeKI	GCWGC	1 cut(s)	183
AspS9I	GGNCC	2 cut(s)	197, 230
AsuC2I	CCSGG	1 cut(s)	112
AsuHPI	GGTGA	2 cut(s)	100, 179
AvaI	CYCGRG	2 cut(s)	353, 439
AvaII	GGWCC	1 cut(s)	197
BaeGI	GKGCMC	1 cut(s)	408
BamHI	GGATCC	1 cut(s)	379
BbsI	GAAGAC	1 cut(s)	62
BbvI	GCAGC	1 cut(s)	170
BciT130I	CCWGG	1 cut(s)	135
BcnI	CCSGG	1 cut(s)	112
BfaI	CTAG	1 cut(s)	12
BfmI	CTRYAG	1 cut(s)	491
BglII	AGATCT	1 cut(s)	117
BisI	GCNGC	1 cut(s)	184
BlpI	GCTNAGC	1 cut(s)	413
BlsI	GCNGC	1 cut(s)	185
Bme1390I	CCNGG	2 cut(s)	112, 135
Bme18I	GGWCC	1 cut(s)	197
BmeT110I	CYCGRG	2 cut(s)	353, 439
BmgT120I	GGNCC	2 cut(s)	197, 230
BmiI	GGNNCC	1 cut(s)	381
BmrFI	CCNGG	2 cut(s)	112, 135
BmsI	GCATC	2 cut(s)	195, 472
BpiI	GAAGAC	1 cut(s)	62
Bpu1102I	GCTNAGC	1 cut(s)	413
BpuMI	CCSGG	1 cut(s)	112
BsaJI	CCNNGG	3 cut(s)	61, 142, 391
BsaWI	WCCGGW	1 cut(s)	92
Bsc4I	CCNNNNNNNGG	2 cut(s)	335, 354
Bse118I	RCCGGY	1 cut(s)	44
Bse1I	ACTGG	2 cut(s)	199, 430
BseAI	TCCGGA	1 cut(s)	92
BseBI	CCWGG	1 cut(s)	135
BseDI	CCNNGG	3 cut(s)	61, 142, 391
BseGI	GGATG	2 cut(s)	455, 487
BseLI	CCNNNNNNNGG	2 cut(s)	335, 354
BseMII	CTCAG	2 cut(s)	14, 135
BseNI	ACTGG	2 cut(s)	199, 430
BseSI	GKGCMC	1 cut(s)	408
BseXI	GCAGC	1 cut(s)	170
BshFI	GGCC	1 cut(s)	232
BsiHKCI	CYCGRG	2 cut(s)	353, 439
BsiSI	CCGG	3 cut(s)	45, 93, 111
BslI	CCNNNNNNNGG	2 cut(s)	335, 354
BsnI	GGCC	1 cut(s)	232
BsoBI	CYCGRG	2 cut(s)	353, 439
Bsp1286I	GDGCHC	1 cut(s)	408
Bsp13I	TCCGGA	1 cut(s)	92
Bsp143I	GATC	3 cut(s)	117, 284, 379
Bsp1720I	GCTNAGC	1 cut(s)	413
Bsp19I	CCATGG	1 cut(s)	142
BspACI	CCGC	5 cut(s)	29, 329, 362, 377, 479
BspANI	GGCC	1 cut(s)	232
BspCNI	CTCAG	2 cut(s)	15, 134
BspEI	TCCGGA	1 cut(s)	92
BspLI	GGNNCC	1 cut(s)	381
BspPI	GGATC	3 cut(s)	292, 374, 387
BspQI	GCTCTTC	1 cut(s)	240
BsrBI	CCGCTC	1 cut(s)	29
BsrFI	RCCGGY	1 cut(s)	44
BsrI	ACTGG	2 cut(s)	199, 430
BssAI	RCCGGY	1 cut(s)	44
BssECI	CCNNGG	3 cut(s)	61, 142, 391
BssMI	GATC	3 cut(s)	117, 284, 379
BssT1I	CCWWGG	2 cut(s)	142, 391
Bst2UI	CCWGG	1 cut(s)	135
Bst4CI	ACNGT	1 cut(s)	293
Bst6I	CTCTTC	1 cut(s)	240
BstC8I	GCNNGC	4 cut(s)	46, 259, 375, 436
BstDEI	CTNAG	4 cut(s)	23, 121, 332, 413
BstDSI	CCRYGG	1 cut(s)	142
BstF5I	GGATG	2 cut(s)	455, 487
BstKTI	GATC	3 cut(s)	120, 287, 382
BstMBI	GATC	3 cut(s)	117, 284, 379
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 337
BstNI	CCWGG	1 cut(s)	135
BstNSI	RCATGY	1 cut(s)	377
BstSCI	CCNGG	2 cut(s)	110, 133
BstSFI	CTRYAG	1 cut(s)	491
BstSLI	GKGCMC	1 cut(s)	408
BstV1I	GCAGC	1 cut(s)	170
BstV2I	GAAGAC	1 cut(s)	62
BstX2I	RGATCY	2 cut(s)	117, 379
BstYI	RGATCY	2 cut(s)	117, 379
BsuRI	GGCC	1 cut(s)	232
BtgI	CCRYGG	1 cut(s)	142
BtsCI	GGATG	2 cut(s)	455, 487
Cac8I	GCNNGC	4 cut(s)	46, 259, 375, 436
Cfr10I	RCCGGY	1 cut(s)	44
Cfr13I	GGNCC	2 cut(s)	197, 230
CseI	GACGC	1 cut(s)	239
Csp6I	GTAC	1 cut(s)	80
CviAII	CATG	4 cut(s)	104, 143, 254, 374
CviJI	RGCY	8 cut(s)	8, 35, 66, 138, 183, 232, 412, 438
CviKI_1	RGCY	8 cut(s)	8, 35, 66, 138, 183, 232, 412, 438
CviQI	GTAC	1 cut(s)	80
DdeI	CTNAG	4 cut(s)	23, 121, 332, 413
DpnI	GATC	3 cut(s)	119, 286, 381
DpnII	GATC	3 cut(s)	117, 284, 379
Eam1104I	CTCTTC	1 cut(s)	240
EarI	CTCTTC	1 cut(s)	240
Eco130I	CCWWGG	2 cut(s)	142, 391
Eco47I	GGWCC	1 cut(s)	197
Eco88I	CYCGRG	2 cut(s)	353, 439
EcoRII	CCWGG	1 cut(s)	133
EcoT14I	CCWWGG	2 cut(s)	142, 391
ErhI	CCWWGG	2 cut(s)	142, 391
FaeI	CATG	4 cut(s)	107, 146, 257, 377
FaiI	YATR	9 cut(s)	105, 144, 153, 255, 324, 326, 350, 375, 493
FatI	CATG	4 cut(s)	103, 142, 253, 373
Fnu4HI	GCNGC	1 cut(s)	184
FokI	GGATG	1 cut(s)	462
Fsp4HI	GCNGC	1 cut(s)	184
FspBI	CTAG	1 cut(s)	12
GluI	GCNGC	1 cut(s)	184
HaeIII	GGCC	1 cut(s)	232
HapII	CCGG	3 cut(s)	45, 93, 111
HgaI	GACGC	1 cut(s)	239
Hin1II	CATG	4 cut(s)	107, 146, 257, 377
HindIII	AAGCTT	1 cut(s)	410
HinfI	GANTC	1 cut(s)	126
HpaII	CCGG	3 cut(s)	45, 93, 111
HphI	GGTGA	2 cut(s)	100, 179
Hpy166II	GTNNAC	1 cut(s)	226
Hpy188I	TCNGA	3 cut(s)	24, 62, 464
Hpy188III	TCNNGA	5 cut(s)	93, 123, 355, 383, 441
Hpy8I	GTNNAC	1 cut(s)	226
HpyCH4III	ACNGT	1 cut(s)	293
HpyCH4IV	ACGT	1 cut(s)	57
HpyCH4V	TGCA	3 cut(s)	186, 281, 373
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 337
HpyF3I	CTNAG	4 cut(s)	23, 121, 332, 413
HpySE526I	ACGT	1 cut(s)	57
Hsp92II	CATG	4 cut(s)	107, 146, 257, 377
Kpn2I	TCCGGA	1 cut(s)	92
KroI	GCCGGC	1 cut(s)	44
KroNI	GCCGGC	1 cut(s)	46
Kzo9I	GATC	3 cut(s)	117, 284, 379
LguI	GCTCTTC	1 cut(s)	240
LmnI	GCTCC	1 cut(s)	13
Lsp1109I	GCAGC	1 cut(s)	170
LweI	GCATC	2 cut(s)	195, 472
MaeI	CTAG	1 cut(s)	12
MaeII	ACGT	1 cut(s)	57
MaeIII	GTNAC	2 cut(s)	106, 269
MalI	GATC	3 cut(s)	119, 286, 381
MbiI	CCGCTC	1 cut(s)	29
MboI	GATC	3 cut(s)	117, 284, 379
MboII	GAAGA	3 cut(s)	62, 127, 257
MflI	RGATCY	2 cut(s)	117, 379
MhlI	GDGCHC	1 cut(s)	408
MluCI	AATT	1 cut(s)	74
MlyI	GAGTC	1 cut(s)	120
MmeI	TCCRAC	1 cut(s)	427
MnlI	CCTC	6 cut(s)	8, 56, 210, 235, 351, 395
MreI	CGCCGGCG	1 cut(s)	44
MroI	TCCGGA	1 cut(s)	92
MroNI	GCCGGC	1 cut(s)	44
MseI	TTAA	2 cut(s)	215, 308
MspI	CCGG	3 cut(s)	45, 93, 111
MspR9I	CCNGG	2 cut(s)	112, 135
MvaI	CCWGG	1 cut(s)	135
MwoI	GCNNNNNNNGC	2 cut(s)	41, 337
NaeI	GCCGGC	1 cut(s)	46
NciI	CCSGG	1 cut(s)	112
NcoI	CCATGG	1 cut(s)	142
NdeII	GATC	3 cut(s)	117, 284, 379
NgoMIV	GCCGGC	1 cut(s)	44
NlaIII	CATG	4 cut(s)	107, 146, 257, 377
NlaIV	GGNNCC	1 cut(s)	381
NmuCI	GTSAC	1 cut(s)	106
NspI	RCATGY	1 cut(s)	377
PaeI	GCATGC	1 cut(s)	377
PaeR7I	CTCGAG	1 cut(s)	439
PciSI	GCTCTTC	1 cut(s)	240
PdiI	GCCGGC	1 cut(s)	46
PkrI	GCNGC	1 cut(s)	185
PleI	GAGTC	1 cut(s)	120
PpsI	GAGTC	1 cut(s)	120
Psp6I	CCWGG	1 cut(s)	133
PspGI	CCWGG	1 cut(s)	133
PspN4I	GGNNCC	1 cut(s)	381
PspPI	GGNCC	2 cut(s)	197, 230
PsuI	RGATCY	2 cut(s)	117, 379
RsaI	GTAC	1 cut(s)	81
RsaNI	GTAC	1 cut(s)	80
SapI	GCTCTTC	1 cut(s)	240
SaqAI	TTAA	2 cut(s)	215, 308
SatI	GCNGC	1 cut(s)	184
Sau3AI	GATC	3 cut(s)	117, 284, 379
Sau96I	GGNCC	2 cut(s)	197, 230
SchI	GAGTC	1 cut(s)	120
ScrFI	CCNGG	2 cut(s)	112, 135
SduI	GDGCHC	1 cut(s)	408
SetI	ASST	5 cut(s)	10, 60, 202, 393, 414
SfaNI	GCATC	2 cut(s)	195, 472
SfcI	CTRYAG	1 cut(s)	491
Sfr274I	CTCGAG	1 cut(s)	439
SgrAI	CRCCGGYG	1 cut(s)	44
SinI	GGWCC	1 cut(s)	197
SlaI	CTCGAG	1 cut(s)	439
SmlI	CTYRAG	1 cut(s)	439
SmoI	CTYRAG	1 cut(s)	439
SphI	GCATGC	1 cut(s)	377
Sse9I	AATT	1 cut(s)	74
SsiI	CCGC	5 cut(s)	29, 329, 362, 377, 479
SspMI	CTAG	1 cut(s)	12
StyD4I	CCNGG	2 cut(s)	110, 133
StyI	CCWWGG	2 cut(s)	142, 391
TaaI	ACNGT	1 cut(s)	293
TaiI	ACGT	1 cut(s)	60
TaqI	TCGA	2 cut(s)	220, 440
TasI	AATT	1 cut(s)	74
Tru1I	TTAA	2 cut(s)	215, 308
Tru9I	TTAA	2 cut(s)	215, 308
TseFI	GTSAC	1 cut(s)	106
TseI	GCWGC	1 cut(s)	183
Tsp45I	GTSAC	1 cut(s)	106
TspDTI	ATGAA	1 cut(s)	140
VpaK11BI	GGWCC	1 cut(s)	197
XceI	RCATGY	1 cut(s)	377
XhoI	CTCGAG	1 cut(s)	439
XspI	CTAG	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.