Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0012754

Physical Location & Seq

Genomic Coordinates Forward (+)

47897862 .. 47900894

Gene Structure 3033 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG332200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGGCAGTGTGAAAGCAGTGGCTGTCATCAGCGGGGGAGATAAGTGCCCCCTGCTCAGAGGCGCTCTTCAATTCGTGCAGGGCCCCCAAGGGCCAACCCATGTTAGAGGAAAAATTAGTGGCCTCTCTCCTGGCCTTCATGGCTTCCATATTCACGCTCTTGGTGATACCTCCAACGGCTGCAATTCCACTGGACCTCACTTCAATCCACTGAACAAGGCCCATGGAGCTCCTTCAGACAAGGACCGTCACGCCGGTGATTTGGGTAACGTCACTGCAGGCCCAGATGGTATGCAAAAATCATTTTCTATCTATTACTATGCAGCTACTATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000303 GO:0000305 GO:0001101 GO:0003674 GO:0003824 GO:0004784 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0006801 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0008270 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009636 GO:0009642 GO:0009644 GO:0009651 GO:0009987 GO:0010035 GO:0010193 GO:0010224 GO:0016209 GO:0016491 GO:0016721 GO:0019430 GO:0033554 GO:0034599 GO:0034614 GO:0034644 GO:0035690 GO:0042221 GO:0042493 GO:0042579 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0046872 GO:0046914 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071214 GO:0071229 GO:0071236 GO:0071450 GO:0071451 GO:0071457 GO:0071470 GO:0071472 GO:0071478 GO:0071482 GO:0071484 GO:0071486 GO:0071493 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:0104004 GO:1901700 GO:1901701 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04146 ko04213 ko05014 ko05016 ko05020 map04146 map04213 map05014 map05016 map05020

Pfam Domains

Protein Families

Sod_Cu

Protein Analysis

111

Amino Acids

11.41

Weight (kDa)

9.06

Isoelectric Point (pI)

21.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sod_Cu	PF00080	20 - 100	1.4e-27	Copper/zinc superoxide dismutase (SODC)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012754)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18100 AT5G18100
fragaria_vesca	FvH4_1g28280
malus_domestica	MD12G1004800.v1.1 MD14G1003300.v1.1
prunus_persica	Prupe.7G005300_v2.0.a1 Prupe.7G005300_v2.0.a1 Prupe.7G005300_v2.0.a1
pyrus_communis	pycom12g00390 pycom14g00120
rosa_chinensis	RchiOBHm_Chr3g0496871
rosa_multiflora	Rmu_sc0001438.1_g000032
rosa_roxburghii	Rroxscaffold_6G00388610
rosa_samantha	Rh3AG332200 Rh3BG368900 Rh3CG365300 Rh3DG368200
rosa_wichuraiana	Rw3G029120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	33
AcuI	CTGAAG	1 cut(s)	219
AgsI	TTSAA	2 cut(s)	71, 205
AjnI	CCWGG	1 cut(s)	130
AleI	CACNNNNGTG	1 cut(s)	255
AluBI	AGCT	2 cut(s)	230, 326
AluI	AGCT	2 cut(s)	230, 326
Alw21I	GWGCWC	1 cut(s)	232
AlwNI	CAGNNNCTG	1 cut(s)	23
AoxI	GGCC	6 cut(s)	82, 92, 121, 133, 219, 280
ApaI	GGGCCC	1 cut(s)	86
ApeKI	GCWGC	2 cut(s)	180, 323
AspLEI	GCGC	1 cut(s)	65
AspS9I	GGNCC	7 cut(s)	82, 83, 92, 194, 220, 244, 281
AsuHPI	GGTGA	2 cut(s)	176, 269
AvaII	GGWCC	2 cut(s)	194, 244
BaeGI	GKGCMC	2 cut(s)	50, 86
BanII	GRGCYC	2 cut(s)	86, 232
Bbv12I	GWGCWC	1 cut(s)	232
BbvI	GCAGC	1 cut(s)	167
BccI	CCATC	1 cut(s)	281
BceAI	ACGGC	1 cut(s)	193
BciT130I	CCWGG	1 cut(s)	132
BfaI	CTAG	1 cut(s)	334
BfmI	CTRYAG	1 cut(s)	276
BfoI	RGCGCY	1 cut(s)	66
BglI	GCCNNNNNGGC	1 cut(s)	141
BisI	GCNGC	2 cut(s)	181, 324
BlsI	GCNGC	2 cut(s)	182, 325
Bme1390I	CCNGG	1 cut(s)	132
Bme18I	GGWCC	2 cut(s)	194, 244
BmgT120I	GGNCC	7 cut(s)	82, 83, 92, 194, 220, 244, 281
BmiI	GGNNCC	2 cut(s)	84, 85
BmrFI	CCNGG	1 cut(s)	132
BsaJI	CCNNGG	2 cut(s)	88, 223
Bse118I	RCCGGY	1 cut(s)	254
Bse1I	ACTGG	1 cut(s)	196
BseBI	CCWGG	1 cut(s)	132
BseDI	CCNNGG	2 cut(s)	88, 223
BseMII	CTCAG	1 cut(s)	70
BseNI	ACTGG	1 cut(s)	196
BseSI	GKGCMC	2 cut(s)	50, 86
BseXI	GCAGC	1 cut(s)	167
BsgI	GTGCAG	1 cut(s)	98
BshFI	GGCC	6 cut(s)	84, 94, 123, 135, 221, 282
BsiHKAI	GWGCWC	1 cut(s)	232
BsiSI	CCGG	1 cut(s)	255
BsnI	GGCC	6 cut(s)	84, 94, 123, 135, 221, 282
Bsp120I	GGGCCC	1 cut(s)	82
Bsp1286I	GDGCHC	3 cut(s)	50, 86, 232
Bsp19I	CCATGG	1 cut(s)	223
BspACI	CCGC	1 cut(s)	33
BspANI	GGCC	6 cut(s)	84, 94, 123, 135, 221, 282
BspCNI	CTCAG	1 cut(s)	69
BspLI	GGNNCC	2 cut(s)	84, 85
BspMAI	CTGCAG	1 cut(s)	280
BspQI	GCTCTTC	1 cut(s)	72
BsrFI	RCCGGY	1 cut(s)	254
BsrI	ACTGG	1 cut(s)	196
BssAI	RCCGGY	1 cut(s)	254
BssECI	CCNNGG	2 cut(s)	88, 223
BssT1I	CCWWGG	2 cut(s)	88, 223
Bst2UI	CCWGG	1 cut(s)	132
Bst4CI	ACNGT	1 cut(s)	248
Bst6I	CTCTTC	1 cut(s)	72
BstC8I	GCNNGC	1 cut(s)	280
BstDEI	CTNAG	1 cut(s)	56
BstDSI	CCRYGG	1 cut(s)	223
BstH2I	RGCGCY	1 cut(s)	66
BstHHI	GCGC	1 cut(s)	65
BstMWI	GCNNNNNNNGC	2 cut(s)	141, 227
BstNI	CCWGG	1 cut(s)	132
BstSCI	CCNGG	1 cut(s)	130
BstSFI	CTRYAG	1 cut(s)	276
BstSLI	GKGCMC	2 cut(s)	50, 86
BstV1I	GCAGC	1 cut(s)	167
BsuRI	GGCC	6 cut(s)	84, 94, 123, 135, 221, 282
BtgI	CCRYGG	1 cut(s)	223
BtsI	GCAGTG	3 cut(s)	13, 24, 273
BtsIMutI	CAGTG	5 cut(s)	13, 24, 189, 209, 273
Cac8I	GCNNGC	1 cut(s)	280
CaiI	CAGNNNCTG	1 cut(s)	23
CfoI	GCGC	1 cut(s)	65
Cfr10I	RCCGGY	1 cut(s)	254
Cfr13I	GGNCC	7 cut(s)	82, 83, 92, 194, 220, 244, 281
CviAII	CATG	3 cut(s)	101, 140, 224
DdeI	CTNAG	1 cut(s)	56
Eam1104I	CTCTTC	1 cut(s)	72
EarI	CTCTTC	1 cut(s)	72
Ecl136II	GAGCTC	1 cut(s)	230
Eco130I	CCWWGG	2 cut(s)	88, 223
Eco24I	GRGCYC	2 cut(s)	86, 232
Eco47I	GGWCC	2 cut(s)	194, 244
Eco53kI	GAGCTC	1 cut(s)	230
Eco57I	CTGAAG	1 cut(s)	219
EcoICRI	GAGCTC	1 cut(s)	230
EcoO109I	RGGNCCY	2 cut(s)	82, 83
EcoRII	CCWGG	1 cut(s)	130
EcoT14I	CCWWGG	2 cut(s)	88, 223
EcoT38I	GRGCYC	2 cut(s)	86, 232
ErhI	CCWWGG	2 cut(s)	88, 223
FaeI	CATG	3 cut(s)	104, 143, 227
FaiI	YATR	6 cut(s)	102, 141, 150, 225, 293, 321
FatI	CATG	3 cut(s)	100, 139, 223
FauI	CCCGC	1 cut(s)	26
Fnu4HI	GCNGC	2 cut(s)	181, 324
FriOI	GRGCYC	2 cut(s)	86, 232
Fsp4HI	GCNGC	2 cut(s)	181, 324
FspBI	CTAG	1 cut(s)	334
GlaI	GCGC	1 cut(s)	64
GluI	GCNGC	2 cut(s)	181, 324
HaeII	RGCGCY	1 cut(s)	66
HaeIII	GGCC	6 cut(s)	84, 94, 123, 135, 221, 282
HapII	CCGG	1 cut(s)	255
HhaI	GCGC	1 cut(s)	65
Hin1II	CATG	3 cut(s)	104, 143, 227
Hin6I	GCGC	1 cut(s)	63
HinP1I	GCGC	1 cut(s)	63
HpaII	CCGG	1 cut(s)	255
HphI	GGTGA	2 cut(s)	176, 269
Hpy188I	TCNGA	2 cut(s)	59, 238
HpyAV	CCTTC	2 cut(s)	146, 243
HpyCH4III	ACNGT	1 cut(s)	248
HpyCH4IV	ACGT	1 cut(s)	270
HpyCH4V	TGCA	5 cut(s)	79, 183, 278, 295, 323
HpyF10VI	GCNNNNNNNGC	2 cut(s)	141, 227
HpyF3I	CTNAG	1 cut(s)	56
HpySE526I	ACGT	1 cut(s)	270
Hsp92II	CATG	3 cut(s)	104, 143, 227
HspAI	GCGC	1 cut(s)	63
LguI	GCTCTTC	1 cut(s)	72
LmnI	GCTCC	2 cut(s)	227, 235
LpnPI	CCDG	8 cut(s)	65, 65, 117, 144, 177, 264, 268, 297
Lsp1109I	GCAGC	1 cut(s)	167
MaeI	CTAG	1 cut(s)	334
MaeII	ACGT	1 cut(s)	270
MaeIII	GTNAC	3 cut(s)	248, 266, 271
MboII	GAAGA	1 cut(s)	59
MhlI	GDGCHC	3 cut(s)	50, 86, 232
MluCI	AATT	3 cut(s)	71, 114, 184
MmeI	TCCRAC	1 cut(s)	198
MnlI	CCTC	5 cut(s)	53, 101, 134, 181, 207
MslI	CAYNNNNRTG	1 cut(s)	255
MspA1I	CMGCKG	1 cut(s)	33
MspI	CCGG	1 cut(s)	255
MspR9I	CCNGG	1 cut(s)	132
MvaI	CCWGG	1 cut(s)	132
MwoI	GCNNNNNNNGC	2 cut(s)	141, 227
NcoI	CCATGG	1 cut(s)	223
NlaIII	CATG	3 cut(s)	104, 143, 227
NlaIV	GGNNCC	2 cut(s)	84, 85
NmuCI	GTSAC	2 cut(s)	248, 271
OliI	CACNNNNGTG	1 cut(s)	255
PciSI	GCTCTTC	1 cut(s)	72
PkrI	GCNGC	2 cut(s)	182, 325
Psp124BI	GAGCTC	1 cut(s)	232
Psp6I	CCWGG	1 cut(s)	130
PspGI	CCWGG	1 cut(s)	130
PspN4I	GGNNCC	2 cut(s)	84, 85
PspOMI	GGGCCC	1 cut(s)	82
PspPI	GGNCC	7 cut(s)	82, 83, 92, 194, 220, 244, 281
PstI	CTGCAG	1 cut(s)	280
PstNI	CAGNNNCTG	1 cut(s)	23
RseI	CAYNNNNRTG	1 cut(s)	255
SacI	GAGCTC	1 cut(s)	232
SapI	GCTCTTC	1 cut(s)	72
SatI	GCNGC	2 cut(s)	181, 324
Sau96I	GGNCC	7 cut(s)	82, 83, 92, 194, 220, 244, 281
ScrFI	CCNGG	1 cut(s)	132
SduI	GDGCHC	3 cut(s)	50, 86, 232
SetI	ASST	5 cut(s)	173, 199, 232, 273, 328
SfcI	CTRYAG	1 cut(s)	276
SgrAI	CRCCGGYG	1 cut(s)	254
SinI	GGWCC	2 cut(s)	194, 244
SmiMI	CAYNNNNRTG	1 cut(s)	255
Sse9I	AATT	3 cut(s)	71, 114, 184
SsiI	CCGC	1 cut(s)	33
SspMI	CTAG	1 cut(s)	334
SstI	GAGCTC	1 cut(s)	232
StyD4I	CCNGG	1 cut(s)	130
StyI	CCWWGG	2 cut(s)	88, 223
TaaI	ACNGT	1 cut(s)	248
TaiI	ACGT	1 cut(s)	273
TasI	AATT	3 cut(s)	71, 114, 184
TscAI	CASTG	5 cut(s)	13, 24, 196, 216, 280
TseFI	GTSAC	2 cut(s)	248, 271
TseI	GCWGC	2 cut(s)	180, 323
Tsp45I	GTSAC	2 cut(s)	248, 271
TspDTI	ATGAA	1 cut(s)	128
TspRI	CASTG	5 cut(s)	13, 24, 196, 216, 280
VpaK11BI	GGWCC	2 cut(s)	194, 244
XspI	CTAG	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.