Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0012754

Physical Location & Seq

Genomic Coordinates Reverse (-)

20110677 .. 20114623

Gene Structure 3947 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g28280.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGGAGGATTTTGGTTGAATTTTAGGGAGGTATTCATGTCTCAGATTCTTGTTTCTTCTTTTGCTGCTGTGTCTTATGGAATGGCGGGGAGAGTGAGAGCAGTGGCTGTAATCACTAGTAGCGGTGGATATGGTGTTAGAGGCGCTGTTGAGTTCGTGCAGGAGGGTGGCCCACATGAGCCGACCCATGTCAGAGGAAGAATCATGGGCCTCTCTCCCGGCCTTCACGGCTTCCATATCCACGCTTTTGGTGATACCTCCAACGGCTGCCTTTCTACCGGACCTCACTTCAATCCGCTCAACAAGGACCATGGAGCTCCTTCAGACCAGCACCGTCACGCCGGTGATTTGGGTAACGTCACTGCTGGTCCTGATGGAGTTGCTGAGGTTTCTCTTGTCGACTCCCAGATTCCACTAAGCGGGCCTCATTCCATTCTTGGGAGGGCGGTTGTTGTGCATGCTGATCCTGATGATCTTGGCAAAGGTGGACATGAACTCAGCAAATCTACTGGGAATGCAGGAGCAAGAGTTGGATGTGGAATAATTGGCCTTCGGTCGTCTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000303 GO:0000305 GO:0001101 GO:0003674 GO:0003824 GO:0004784 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0006801 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0008270 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009636 GO:0009642 GO:0009644 GO:0009651 GO:0009987 GO:0010035 GO:0010193 GO:0010224 GO:0016209 GO:0016491 GO:0016721 GO:0019430 GO:0033554 GO:0034599 GO:0034614 GO:0034644 GO:0035690 GO:0042221 GO:0042493 GO:0042579 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0046872 GO:0046914 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071214 GO:0071229 GO:0071236 GO:0071450 GO:0071451 GO:0071457 GO:0071470 GO:0071472 GO:0071478 GO:0071482 GO:0071484 GO:0071486 GO:0071493 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:0104004 GO:1901700 GO:1901701 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04146 ko04213 ko05014 ko05016 ko05020 map04146 map04213 map05014 map05016 map05020

Pfam Domains

Protein Families

Sod_Cu

Protein Analysis

189

Amino Acids

19.34

Weight (kDa)

6.62

Isoelectric Point (pI)

26.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sod_Cu	PF00080	46 - 182	8e-50	Copper/zinc superoxide dismutase (SODC)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012754)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18100 AT5G18100
fragaria_vesca	FvH4_1g28280
malus_domestica	MD12G1004800.v1.1 MD14G1003300.v1.1
prunus_persica	Prupe.7G005300_v2.0.a1 Prupe.7G005300_v2.0.a1 Prupe.7G005300_v2.0.a1
pyrus_communis	pycom12g00390 pycom14g00120
rosa_chinensis	RchiOBHm_Chr3g0496871
rosa_multiflora	Rmu_sc0001438.1_g000032
rosa_roxburghii	Rroxscaffold_6G00388610
rosa_samantha	Rh3AG332200 Rh3BG368900 Rh3CG365300 Rh3DG368200
rosa_wichuraiana	Rw3G029120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	298
AccI	GTMKAC	1 cut(s)	399
AciI	CCGC	5 cut(s)	86, 123, 296, 420, 446
AclWI	GGATC	1 cut(s)	458
AcsI	RAATTY	1 cut(s)	19
AcuI	CTGAAG	1 cut(s)	306
AfiI	CCNNNNNNNGG	2 cut(s)	419, 438
AgsI	TTSAA	2 cut(s)	19, 292
AhlI	ACTAGT	1 cut(s)	116
AleI	CACNNNNGTG	1 cut(s)	342
AluBI	AGCT	1 cut(s)	317
AluI	AGCT	1 cut(s)	317
Alw21I	GWGCWC	1 cut(s)	319
Alw26I	GTCTC	1 cut(s)	45
AlwI	GGATC	1 cut(s)	458
AlwNI	CAGNNNCTG	1 cut(s)	107
AoxI	GGCC	5 cut(s)	169, 208, 220, 422, 547
ApeKI	GCWGC	2 cut(s)	65, 267
ApoI	RAATTY	1 cut(s)	19
AspLEI	GCGC	1 cut(s)	146
AspS9I	GGNCC	6 cut(s)	170, 208, 281, 307, 368, 422
AsuC2I	CCSGG	1 cut(s)	219
AsuHPI	GGTGA	2 cut(s)	263, 356
AvaII	GGWCC	3 cut(s)	281, 307, 368
BanII	GRGCYC	1 cut(s)	319
Bbv12I	GWGCWC	1 cut(s)	319
BbvCI	CCTCAGC	1 cut(s)	384
BbvI	GCAGC	2 cut(s)	52, 254
BccI	CCATC	1 cut(s)	368
BceAI	ACGGC	2 cut(s)	244, 280
BcnI	CCSGG	1 cut(s)	219
BcoDI	GTCTC	1 cut(s)	45
BcuI	ACTAGT	1 cut(s)	116
BfaI	CTAG	1 cut(s)	117
BfoI	RGCGCY	1 cut(s)	147
BglI	GCCNNNNNGGC	1 cut(s)	228
BisI	GCNGC	2 cut(s)	66, 268
BlsI	GCNGC	2 cut(s)	67, 269
Bme1390I	CCNGG	1 cut(s)	219
Bme18I	GGWCC	3 cut(s)	281, 307, 368
BmgT120I	GGNCC	6 cut(s)	170, 208, 281, 307, 368, 422
BmrFI	CCNGG	1 cut(s)	219
BmrI	ACTGGG	1 cut(s)	519
BmuI	ACTGGG	1 cut(s)	519
BoxI	GACNNNNGTC	1 cut(s)	188
Bpu10I	CCTNAGC	1 cut(s)	384
BpuMI	CCSGG	1 cut(s)	219
BsaJI	CCNNGG	1 cut(s)	310
BsaWI	WCCGGW	1 cut(s)	278
BsaXI	ACNNNNNCTCC	2 cut(s)	513, 543
Bsc4I	CCNNNNNNNGG	2 cut(s)	419, 438
Bse118I	RCCGGY	1 cut(s)	341
Bse1I	ACTGG	1 cut(s)	514
BseDI	CCNNGG	1 cut(s)	310
BseGI	GGATG	1 cut(s)	539
BseLI	CCNNNNNNNGG	2 cut(s)	419, 438
BseMII	CTCAG	3 cut(s)	56, 375, 511
BseNI	ACTGG	1 cut(s)	514
BseXI	GCAGC	2 cut(s)	52, 254
BsgI	GTGCAG	1 cut(s)	179
Bsh1285I	CGRYCG	1 cut(s)	557
BshFI	GGCC	5 cut(s)	171, 210, 222, 424, 549
BsiEI	CGRYCG	1 cut(s)	557
BsiHKAI	GWGCWC	1 cut(s)	319
BsiSI	CCGG	3 cut(s)	219, 279, 342
BslI	CCNNNNNNNGG	2 cut(s)	419, 438
BsmAI	GTCTC	1 cut(s)	45
BsmI	GAATGC	1 cut(s)	520
BsnI	GGCC	5 cut(s)	171, 210, 222, 424, 549
Bsp1286I	GDGCHC	1 cut(s)	319
Bsp143I	GATC	2 cut(s)	463, 472
Bsp19I	CCATGG	1 cut(s)	310
BspACI	CCGC	5 cut(s)	86, 123, 296, 420, 446
BspANI	GGCC	5 cut(s)	171, 210, 222, 424, 549
BspCNI	CTCAG	3 cut(s)	55, 376, 510
BspPI	GGATC	1 cut(s)	458
BsrBI	CCGCTC	1 cut(s)	298
BsrFI	RCCGGY	1 cut(s)	341
BsrI	ACTGG	1 cut(s)	514
BssAI	RCCGGY	1 cut(s)	341
BssECI	CCNNGG	1 cut(s)	310
BssMI	GATC	2 cut(s)	463, 472
BssT1I	CCWWGG	1 cut(s)	310
Bst4CI	ACNGT	1 cut(s)	335
BstC8I	GCNNGC	2 cut(s)	422, 459
BstDEI	CTNAG	4 cut(s)	42, 384, 416, 497
BstDSI	CCRYGG	1 cut(s)	310
BstF5I	GGATG	1 cut(s)	539
BstH2I	RGCGCY	1 cut(s)	147
BstHHI	GCGC	1 cut(s)	146
BstKTI	GATC	2 cut(s)	466, 475
BstMAI	GTCTC	1 cut(s)	45
BstMBI	GATC	2 cut(s)	463, 472
BstMCI	CGRYCG	1 cut(s)	557
BstMWI	GCNNNNNNNGC	1 cut(s)	228
BstNSI	RCATGY	1 cut(s)	461
BstPAI	GACNNNNGTC	1 cut(s)	188
BstSCI	CCNGG	1 cut(s)	217
BstV1I	GCAGC	2 cut(s)	52, 254
BstXI	CCANNNNNNTGG	1 cut(s)	248
BsuRI	GGCC	5 cut(s)	171, 210, 222, 424, 549
BtgI	CCRYGG	1 cut(s)	310
BtsCI	GGATG	1 cut(s)	539
BtsI	GCAGTG	2 cut(s)	108, 360
BtsIMutI	CAGTG	2 cut(s)	108, 360
Cac8I	GCNNGC	2 cut(s)	422, 459
CaiI	CAGNNNCTG	1 cut(s)	107
CfoI	GCGC	1 cut(s)	146
Cfr10I	RCCGGY	1 cut(s)	341
Cfr13I	GGNCC	6 cut(s)	170, 208, 281, 307, 368, 422
CviAII	CATG	7 cut(s)	37, 176, 188, 205, 311, 458, 491
DdeI	CTNAG	4 cut(s)	42, 384, 416, 497
DpnI	GATC	2 cut(s)	465, 474
DpnII	GATC	2 cut(s)	463, 472
Ecl136II	GAGCTC	1 cut(s)	317
Eco130I	CCWWGG	1 cut(s)	310
Eco24I	GRGCYC	1 cut(s)	319
Eco47I	GGWCC	3 cut(s)	281, 307, 368
Eco53kI	GAGCTC	1 cut(s)	317
Eco57I	CTGAAG	1 cut(s)	306
EcoICRI	GAGCTC	1 cut(s)	317
EcoT14I	CCWWGG	1 cut(s)	310
EcoT38I	GRGCYC	1 cut(s)	319
ErhI	CCWWGG	1 cut(s)	310
FaeI	CATG	7 cut(s)	40, 179, 191, 208, 314, 461, 494
FatI	CATG	7 cut(s)	36, 175, 187, 204, 310, 457, 490
FauI	CCCGC	2 cut(s)	79, 413
FblI	GTMKAC	1 cut(s)	399
Fnu4HI	GCNGC	2 cut(s)	66, 268
FokI	GGATG	1 cut(s)	546
FriOI	GRGCYC	1 cut(s)	319
Fsp4HI	GCNGC	2 cut(s)	66, 268
FspBI	CTAG	1 cut(s)	117
GlaI	GCGC	1 cut(s)	145
GluI	GCNGC	2 cut(s)	66, 268
HaeII	RGCGCY	1 cut(s)	147
HaeIII	GGCC	5 cut(s)	171, 210, 222, 424, 549
HapII	CCGG	3 cut(s)	219, 279, 342
HhaI	GCGC	1 cut(s)	146
Hin1II	CATG	7 cut(s)	40, 179, 191, 208, 314, 461, 494
Hin6I	GCGC	1 cut(s)	144
HinP1I	GCGC	1 cut(s)	144
HincII	GTYRAC	1 cut(s)	400
HindII	GTYRAC	1 cut(s)	400
HinfI	GANTC	4 cut(s)	46, 201, 401, 409
HpaII	CCGG	3 cut(s)	219, 279, 342
HphI	GGTGA	2 cut(s)	263, 356
Hpy166II	GTNNAC	2 cut(s)	400, 488
Hpy188I	TCNGA	3 cut(s)	45, 194, 325
Hpy188III	TCNNGA	2 cut(s)	371, 467
Hpy8I	GTNNAC	2 cut(s)	400, 488
HpyAV	CCTTC	3 cut(s)	233, 330, 560
HpyCH4III	ACNGT	1 cut(s)	335
HpyCH4IV	ACGT	1 cut(s)	357
HpyCH4V	TGCA	3 cut(s)	160, 457, 518
HpyF10VI	GCNNNNNNNGC	1 cut(s)	228
HpyF3I	CTNAG	4 cut(s)	42, 384, 416, 497
HpySE526I	ACGT	1 cut(s)	357
Hsp92II	CATG	7 cut(s)	40, 179, 191, 208, 314, 461, 494
HspAI	GCGC	1 cut(s)	144
Kzo9I	GATC	2 cut(s)	463, 472
LmnI	GCTCC	3 cut(s)	314, 322, 521
Lsp1109I	GCAGC	2 cut(s)	52, 254
MaeI	CTAG	1 cut(s)	117
MaeII	ACGT	1 cut(s)	357
MaeIII	GTNAC	3 cut(s)	335, 353, 358
MalI	GATC	2 cut(s)	465, 474
MbiI	CCGCTC	1 cut(s)	298
MboI	GATC	2 cut(s)	463, 472
MboII	GAAGA	2 cut(s)	48, 210
MhlI	GDGCHC	1 cut(s)	319
MluCI	AATT	2 cut(s)	19, 543
MlyI	GAGTC	1 cut(s)	395
MmeI	TCCRAC	2 cut(s)	285, 511
MseI	TTAA	1 cut(s)	565
MslI	CAYNNNNRTG	1 cut(s)	342
MspI	CCGG	3 cut(s)	219, 279, 342
MspR9I	CCNGG	1 cut(s)	219
Mva1269I	GAATGC	1 cut(s)	520
MwoI	GCNNNNNNNGC	1 cut(s)	228
NciI	CCSGG	1 cut(s)	219
NcoI	CCATGG	1 cut(s)	310
NdeII	GATC	2 cut(s)	463, 472
NlaIII	CATG	7 cut(s)	40, 179, 191, 208, 314, 461, 494
NmuCI	GTSAC	2 cut(s)	335, 358
NspI	RCATGY	1 cut(s)	461
OliI	CACNNNNGTG	1 cut(s)	342
PaeI	GCATGC	1 cut(s)	461
PctI	GAATGC	1 cut(s)	520
PfeI	GAWTC	3 cut(s)	46, 201, 409
PkrI	GCNGC	2 cut(s)	67, 269
PleI	GAGTC	1 cut(s)	395
PpsI	GAGTC	1 cut(s)	395
PshAI	GACNNNNGTC	1 cut(s)	188
Psp124BI	GAGCTC	1 cut(s)	319
PspPI	GGNCC	6 cut(s)	170, 208, 281, 307, 368, 422
PstNI	CAGNNNCTG	1 cut(s)	107
RseI	CAYNNNNRTG	1 cut(s)	342
SacI	GAGCTC	1 cut(s)	319
SalI	GTCGAC	1 cut(s)	398
SaqAI	TTAA	1 cut(s)	565
SatI	GCNGC	2 cut(s)	66, 268
Sau3AI	GATC	2 cut(s)	463, 472
Sau96I	GGNCC	6 cut(s)	170, 208, 281, 307, 368, 422
SchI	GAGTC	1 cut(s)	395
ScrFI	CCNGG	1 cut(s)	219
SduI	GDGCHC	1 cut(s)	319
SetI	ASST	7 cut(s)	33, 260, 286, 319, 360, 390, 487
SgrAI	CRCCGGYG	1 cut(s)	341
SinI	GGWCC	3 cut(s)	281, 307, 368
SmiMI	CAYNNNNRTG	1 cut(s)	342
SpeI	ACTAGT	1 cut(s)	116
SphI	GCATGC	1 cut(s)	461
Sse9I	AATT	2 cut(s)	19, 543
SsiI	CCGC	5 cut(s)	86, 123, 296, 420, 446
SspMI	CTAG	1 cut(s)	117
SstI	GAGCTC	1 cut(s)	319
StyD4I	CCNGG	1 cut(s)	217
StyI	CCWWGG	1 cut(s)	310
TaaI	ACNGT	1 cut(s)	335
TaiI	ACGT	1 cut(s)	360
TaqI	TCGA	1 cut(s)	399
TaqII	GACCGA	1 cut(s)	543
TasI	AATT	2 cut(s)	19, 543
TfiI	GAWTC	3 cut(s)	46, 201, 409
Tru1I	TTAA	1 cut(s)	565
Tru9I	TTAA	1 cut(s)	565
TscAI	CASTG	2 cut(s)	108, 367
TseFI	GTSAC	2 cut(s)	335, 358
TseI	GCWGC	2 cut(s)	65, 267
Tsp45I	GTSAC	2 cut(s)	335, 358
TspDTI	ATGAA	2 cut(s)	25, 507
TspRI	CASTG	2 cut(s)	108, 367
VpaK11BI	GGWCC	3 cut(s)	281, 307, 368
XapI	RAATTY	1 cut(s)	19
XceI	RCATGY	1 cut(s)	461
XmiI	GTMKAC	1 cut(s)	399
XspI	CTAG	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.