Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0012754

Physical Location & Seq

Genomic Coordinates Forward (+)

46359256 .. 46363035

Gene Structure 3780 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG368200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGGGGAGAAGGAAATGGGCAGTGTGAAAGCAGTGGCTGTAATCAGCGGGGGAGATAAGTGCCCCCTGCTCAGAGGCGCTCTTCAATTCGTGCAGGGTCCCCAAGGGCCAACCCATGTTAGAGGAAAAATTAGTGGTCTCTCTCCTGGCCTTCATGGCTTCCATATTCACGCTCTTGGTGATACCTCCAACGGCTGCAATTCCACTGGACCTCACTTCAATCCACTGAACAAGGCCCATGGAGCTCCTTCAGACACGGACCGTCACGCCGGTGATTTGGGTAACGTCACTGCAGGCCCAGATGGAGTTGCTGAGGTTTCTGTTGACGACTGGCAGGTAACCCAATTTCGACATTCAAATCCTTTCTTTCATGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000303 GO:0000305 GO:0001101 GO:0003674 GO:0003824 GO:0004784 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0006801 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0008270 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009636 GO:0009642 GO:0009644 GO:0009651 GO:0009987 GO:0010035 GO:0010193 GO:0010224 GO:0016209 GO:0016491 GO:0016721 GO:0019430 GO:0033554 GO:0034599 GO:0034614 GO:0034644 GO:0035690 GO:0042221 GO:0042493 GO:0042579 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0046872 GO:0046914 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071214 GO:0071229 GO:0071236 GO:0071450 GO:0071451 GO:0071457 GO:0071470 GO:0071472 GO:0071478 GO:0071482 GO:0071484 GO:0071486 GO:0071493 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:0104004 GO:1901700 GO:1901701 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04146 ko04213 ko05014 ko05016 ko05020 map04146 map04213 map05014 map05016 map05020

Pfam Domains

Protein Families

Sod_Cu

Protein Analysis

125

Amino Acids

13.03

Weight (kDa)

6.27

Isoelectric Point (pI)

15.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sod_Cu	PF00080	25 - 115	5e-30	Copper/zinc superoxide dismutase (SODC)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012754)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18100 AT5G18100
fragaria_vesca	FvH4_1g28280
malus_domestica	MD12G1004800.v1.1 MD14G1003300.v1.1
prunus_persica	Prupe.7G005300_v2.0.a1 Prupe.7G005300_v2.0.a1 Prupe.7G005300_v2.0.a1
pyrus_communis	pycom12g00390 pycom14g00120
rosa_chinensis	RchiOBHm_Chr3g0496871
rosa_multiflora	Rmu_sc0001438.1_g000032
rosa_roxburghii	Rroxscaffold_6G00388610
rosa_samantha	Rh3AG332200 Rh3BG368900 Rh3CG365300 Rh3DG368200
rosa_wichuraiana	Rw3G029120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	325
AciI	CCGC	1 cut(s)	48
AcuI	CTGAAG	1 cut(s)	234
AgsI	TTSAA	3 cut(s)	86, 220, 357
AjnI	CCWGG	1 cut(s)	145
AleI	CACNNNNGTG	1 cut(s)	270
AluBI	AGCT	1 cut(s)	245
AluI	AGCT	1 cut(s)	245
Alw21I	GWGCWC	1 cut(s)	247
Alw26I	GTCTC	1 cut(s)	143
AlwNI	CAGNNNCTG	1 cut(s)	38
AoxI	GGCC	4 cut(s)	107, 148, 234, 295
ApeKI	GCWGC	1 cut(s)	195
AspLEI	GCGC	1 cut(s)	80
AspS9I	GGNCC	6 cut(s)	98, 107, 209, 235, 259, 296
AsuHPI	GGTGA	2 cut(s)	191, 284
AvaII	GGWCC	3 cut(s)	98, 209, 259
BaeGI	GKGCMC	1 cut(s)	65
BanII	GRGCYC	1 cut(s)	247
Bbv12I	GWGCWC	1 cut(s)	247
BbvCI	CCTCAGC	1 cut(s)	312
BbvI	GCAGC	1 cut(s)	182
BccI	CCATC	1 cut(s)	296
BceAI	ACGGC	1 cut(s)	208
BciT130I	CCWGG	1 cut(s)	147
BcoDI	GTCTC	1 cut(s)	143
BfmI	CTRYAG	1 cut(s)	291
BfoI	RGCGCY	1 cut(s)	81
BfuAI	ACCTGC	1 cut(s)	325
BglI	GCCNNNNNGGC	1 cut(s)	156
BisI	GCNGC	1 cut(s)	196
BlsI	GCNGC	1 cut(s)	197
Bme1390I	CCNGG	1 cut(s)	147
Bme18I	GGWCC	3 cut(s)	98, 209, 259
BmgT120I	GGNCC	6 cut(s)	98, 107, 209, 235, 259, 296
BmiI	GGNNCC	2 cut(s)	99, 100
BmrFI	CCNGG	1 cut(s)	147
Bpu10I	CCTNAGC	1 cut(s)	312
BsaI	GGTCTC	1 cut(s)	143
BsaJI	CCNNGG	2 cut(s)	103, 238
Bse118I	RCCGGY	1 cut(s)	269
Bse1I	ACTGG	2 cut(s)	211, 335
BseBI	CCWGG	1 cut(s)	147
BseDI	CCNNGG	2 cut(s)	103, 238
BseMII	CTCAG	2 cut(s)	85, 303
BseNI	ACTGG	2 cut(s)	211, 335
BseSI	GKGCMC	1 cut(s)	65
BseXI	GCAGC	1 cut(s)	182
BsgI	GTGCAG	1 cut(s)	113
BshFI	GGCC	4 cut(s)	109, 150, 236, 297
BsiHKAI	GWGCWC	1 cut(s)	247
BsiSI	CCGG	1 cut(s)	270
BslFI	GGGAC	1 cut(s)	84
BsmAI	GTCTC	1 cut(s)	143
BsmFI	GGGAC	1 cut(s)	84
BsnI	GGCC	4 cut(s)	109, 150, 236, 297
Bso31I	GGTCTC	1 cut(s)	143
Bsp1286I	GDGCHC	2 cut(s)	65, 247
Bsp19I	CCATGG	1 cut(s)	238
BspACI	CCGC	1 cut(s)	48
BspANI	GGCC	4 cut(s)	109, 150, 236, 297
BspCNI	CTCAG	2 cut(s)	84, 304
BspHI	TCATGA	1 cut(s)	370
BspLI	GGNNCC	2 cut(s)	99, 100
BspMAI	CTGCAG	1 cut(s)	295
BspMI	ACCTGC	1 cut(s)	325
BspQI	GCTCTTC	1 cut(s)	87
BspTNI	GGTCTC	1 cut(s)	143
BsrFI	RCCGGY	1 cut(s)	269
BsrI	ACTGG	2 cut(s)	211, 335
BssAI	RCCGGY	1 cut(s)	269
BssECI	CCNNGG	2 cut(s)	103, 238
BssT1I	CCWWGG	2 cut(s)	103, 238
Bst2UI	CCWGG	1 cut(s)	147
Bst4CI	ACNGT	1 cut(s)	263
Bst6I	CTCTTC	1 cut(s)	87
BstC8I	GCNNGC	1 cut(s)	295
BstDEI	CTNAG	2 cut(s)	71, 312
BstDSI	CCRYGG	1 cut(s)	238
BstEII	GGTNACC	1 cut(s)	337
BstH2I	RGCGCY	1 cut(s)	81
BstHHI	GCGC	1 cut(s)	80
BstMAI	GTCTC	1 cut(s)	143
BstMWI	GCNNNNNNNGC	2 cut(s)	156, 242
BstNI	CCWGG	1 cut(s)	147
BstPI	GGTNACC	1 cut(s)	337
BstSCI	CCNGG	1 cut(s)	145
BstSFI	CTRYAG	1 cut(s)	291
BstSLI	GKGCMC	1 cut(s)	65
BstV1I	GCAGC	1 cut(s)	182
BsuRI	GGCC	4 cut(s)	109, 150, 236, 297
BtgI	CCRYGG	1 cut(s)	238
BtsI	GCAGTG	3 cut(s)	28, 39, 288
BtsIMutI	CAGTG	5 cut(s)	28, 39, 204, 224, 288
BveI	ACCTGC	1 cut(s)	325
Cac8I	GCNNGC	1 cut(s)	295
CaiI	CAGNNNCTG	1 cut(s)	38
CciI	TCATGA	1 cut(s)	370
CfoI	GCGC	1 cut(s)	80
Cfr10I	RCCGGY	1 cut(s)	269
Cfr13I	GGNCC	6 cut(s)	98, 107, 209, 235, 259, 296
CpoI	CGGWCCG	1 cut(s)	259
CspI	CGGWCCG	1 cut(s)	259
CviAII	CATG	4 cut(s)	116, 155, 239, 371
CviJI	RGCY	8 cut(s)	38, 109, 150, 159, 195, 236, 245, 297
CviKI_1	RGCY	8 cut(s)	38, 109, 150, 159, 195, 236, 245, 297
DdeI	CTNAG	2 cut(s)	71, 312
Eam1104I	CTCTTC	1 cut(s)	87
EarI	CTCTTC	1 cut(s)	87
Ecl136II	GAGCTC	1 cut(s)	245
Eco130I	CCWWGG	2 cut(s)	103, 238
Eco24I	GRGCYC	1 cut(s)	247
Eco31I	GGTCTC	1 cut(s)	143
Eco47I	GGWCC	3 cut(s)	98, 209, 259
Eco53kI	GAGCTC	1 cut(s)	245
Eco57I	CTGAAG	1 cut(s)	234
Eco91I	GGTNACC	1 cut(s)	337
EcoICRI	GAGCTC	1 cut(s)	245
EcoO109I	RGGNCCY	1 cut(s)	98
EcoO65I	GGTNACC	1 cut(s)	337
EcoRII	CCWGG	1 cut(s)	145
EcoT14I	CCWWGG	2 cut(s)	103, 238
EcoT38I	GRGCYC	1 cut(s)	247
ErhI	CCWWGG	2 cut(s)	103, 238
FaeI	CATG	4 cut(s)	119, 158, 242, 374
FaiI	YATR	5 cut(s)	117, 156, 165, 240, 372
FaqI	GGGAC	1 cut(s)	84
FatI	CATG	4 cut(s)	115, 154, 238, 370
FauI	CCCGC	1 cut(s)	41
Fnu4HI	GCNGC	1 cut(s)	196
FriOI	GRGCYC	1 cut(s)	247
Fsp4HI	GCNGC	1 cut(s)	196
GlaI	GCGC	1 cut(s)	79
GluI	GCNGC	1 cut(s)	196
HaeII	RGCGCY	1 cut(s)	81
HaeIII	GGCC	4 cut(s)	109, 150, 236, 297
HapII	CCGG	1 cut(s)	270
HhaI	GCGC	1 cut(s)	80
Hin1II	CATG	4 cut(s)	119, 158, 242, 374
Hin6I	GCGC	1 cut(s)	78
HinP1I	GCGC	1 cut(s)	78
HincII	GTYRAC	1 cut(s)	325
HindII	GTYRAC	1 cut(s)	325
HpaII	CCGG	1 cut(s)	270
HphI	GGTGA	2 cut(s)	191, 284
Hpy166II	GTNNAC	1 cut(s)	325
Hpy188I	TCNGA	2 cut(s)	74, 253
Hpy188III	TCNNGA	1 cut(s)	371
Hpy8I	GTNNAC	1 cut(s)	325
HpyAV	CCTTC	3 cut(s)	4, 161, 258
HpyCH4III	ACNGT	1 cut(s)	263
HpyCH4IV	ACGT	1 cut(s)	285
HpyCH4V	TGCA	3 cut(s)	94, 198, 293
HpyF10VI	GCNNNNNNNGC	2 cut(s)	156, 242
HpyF3I	CTNAG	2 cut(s)	71, 312
HpySE526I	ACGT	1 cut(s)	285
Hsp92II	CATG	4 cut(s)	119, 158, 242, 374
HspAI	GCGC	1 cut(s)	78
KflI	GGGWCCC	1 cut(s)	98
LguI	GCTCTTC	1 cut(s)	87
LmnI	GCTCC	2 cut(s)	242, 250
Lsp1109I	GCAGC	1 cut(s)	182
MaeII	ACGT	1 cut(s)	285
MaeIII	GTNAC	4 cut(s)	263, 281, 286, 337
MboII	GAAGA	1 cut(s)	74
MhlI	GDGCHC	2 cut(s)	65, 247
MluCI	AATT	4 cut(s)	86, 129, 199, 344
MmeI	TCCRAC	1 cut(s)	213
MnlI	CCTC	5 cut(s)	68, 116, 196, 222, 307
MslI	CAYNNNNRTG	1 cut(s)	270
MspA1I	CMGCKG	1 cut(s)	48
MspI	CCGG	1 cut(s)	270
MspR9I	CCNGG	1 cut(s)	147
MvaI	CCWGG	1 cut(s)	147
MwoI	GCNNNNNNNGC	2 cut(s)	156, 242
NcoI	CCATGG	1 cut(s)	238
NlaIII	CATG	4 cut(s)	119, 158, 242, 374
NlaIV	GGNNCC	2 cut(s)	99, 100
NmuCI	GTSAC	2 cut(s)	263, 286
OliI	CACNNNNGTG	1 cut(s)	270
PagI	TCATGA	1 cut(s)	370
PciSI	GCTCTTC	1 cut(s)	87
PkrI	GCNGC	1 cut(s)	197
PpuMI	RGGWCCY	1 cut(s)	98
Psp124BI	GAGCTC	1 cut(s)	247
Psp5II	RGGWCCY	1 cut(s)	98
Psp6I	CCWGG	1 cut(s)	145
PspEI	GGTNACC	1 cut(s)	337
PspGI	CCWGG	1 cut(s)	145
PspN4I	GGNNCC	2 cut(s)	99, 100
PspPI	GGNCC	6 cut(s)	98, 107, 209, 235, 259, 296
PspPPI	RGGWCCY	1 cut(s)	98
PstI	CTGCAG	1 cut(s)	295
PstNI	CAGNNNCTG	1 cut(s)	38
RseI	CAYNNNNRTG	1 cut(s)	270
Rsr2I	CGGWCCG	1 cut(s)	259
RsrII	CGGWCCG	1 cut(s)	259
SacI	GAGCTC	1 cut(s)	247
SapI	GCTCTTC	1 cut(s)	87
SatI	GCNGC	1 cut(s)	196
Sau96I	GGNCC	6 cut(s)	98, 107, 209, 235, 259, 296
ScrFI	CCNGG	1 cut(s)	147
SduI	GDGCHC	2 cut(s)	65, 247
SetI	ASST	6 cut(s)	188, 214, 247, 288, 318, 339
SfcI	CTRYAG	1 cut(s)	291
SgrAI	CRCCGGYG	1 cut(s)	269
SinI	GGWCC	3 cut(s)	98, 209, 259
SmiMI	CAYNNNNRTG	1 cut(s)	270
Sse9I	AATT	4 cut(s)	86, 129, 199, 344
SsiI	CCGC	1 cut(s)	48
SstI	GAGCTC	1 cut(s)	247
StyD4I	CCNGG	1 cut(s)	145
StyI	CCWWGG	2 cut(s)	103, 238
TaaI	ACNGT	1 cut(s)	263
TaiI	ACGT	1 cut(s)	288
TaqI	TCGA	1 cut(s)	349
TasI	AATT	4 cut(s)	86, 129, 199, 344
TscAI	CASTG	5 cut(s)	28, 39, 211, 231, 295
TseFI	GTSAC	2 cut(s)	263, 286
TseI	GCWGC	1 cut(s)	195
Tsp45I	GTSAC	2 cut(s)	263, 286
TspDTI	ATGAA	2 cut(s)	143, 359
TspGWI	ACGGA	1 cut(s)	272
TspRI	CASTG	5 cut(s)	28, 39, 211, 231, 295
VpaK11BI	GGWCC	3 cut(s)	98, 209, 259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.