Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0012754

Physical Location & Seq

Genomic Coordinates Forward (+)

626782 .. 631131

Gene Structure 4350 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G005300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGGTAGTGTGAAAGCAGTTGCTCTTATCACCGGAGATTCCAAAGTCCGAGGCTCTCTTCATTTCGTTCAGGATACCAGCGGGCCTACACAAGTAAAAGGGAGAATTACTGGGCTCTCTCCGGGCCTTCATGGTTTCCATATTCACGCTCTTGGTGATACCTCCAATGGTTGCAATTCCACTGGACCTCATTTTAATCCATTGAAGAAGGACCATGGAGCTCCTTCAGATAAGGAGCGTCACGCAGGTGATTTGGGTAACGTTGTTGCAGGCCCAGATGGAGTTGCTGAGGTTTCTCTTAAGGACTGGCAGATTCCACTAAGCGGACCTCATTCCATTCTTGGGAGGGCAGTTGTAGTGCATGCTGATCCTGATGATCTTGGCAAAGGTGGACATGAACTCAGCAAGACTACTGGGAATGCAGGAGCAAGAGTTGGATGTGGTATGTATTTCACTTCTCTAGCCTTTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000303 GO:0000305 GO:0001101 GO:0003674 GO:0003824 GO:0004784 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0006801 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0008270 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009636 GO:0009642 GO:0009644 GO:0009651 GO:0009987 GO:0010035 GO:0010193 GO:0010224 GO:0016209 GO:0016491 GO:0016721 GO:0019430 GO:0033554 GO:0034599 GO:0034614 GO:0034644 GO:0035690 GO:0042221 GO:0042493 GO:0042579 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0046872 GO:0046914 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071214 GO:0071229 GO:0071236 GO:0071450 GO:0071451 GO:0071457 GO:0071470 GO:0071472 GO:0071478 GO:0071482 GO:0071484 GO:0071486 GO:0071493 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:0104004 GO:1901700 GO:1901701 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04146 ko04213 ko05014 ko05016 ko05020 map04146 map04213 map05014 map05016 map05020

Pfam Domains

Protein Families

Sod_Cu

Protein Analysis

158

Amino Acids

16.11

Weight (kDa)

7.15

Isoelectric Point (pI)

8.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012754)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18100 AT5G18100
fragaria_vesca	FvH4_1g28280
malus_domestica	MD12G1004800.v1.1 MD14G1003300.v1.1
prunus_persica	Prupe.7G005300_v2.0.a1 Prupe.7G005300_v2.0.a1 Prupe.7G005300_v2.0.a1
pyrus_communis	pycom12g00390 pycom14g00120
rosa_chinensis	RchiOBHm_Chr3g0496871
rosa_multiflora	Rmu_sc0001438.1_g000032
rosa_roxburghii	Rroxscaffold_6G00388610
rosa_samantha	Rh3AG332200 Rh3BG368900 Rh3CG365300 Rh3DG368200
rosa_wichuraiana	Rw3G029120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	236
Acc36I	ACCTGC	1 cut(s)	236
AciI	CCGC	2 cut(s)	81, 324
AclI	AACGTT	1 cut(s)	261
AclWI	GGATC	1 cut(s)	362
AcuI	CTGAAG	1 cut(s)	210
AfiI	CCNNNNNNNGG	2 cut(s)	323, 342
AflII	CTTAAG	1 cut(s)	299
AgsI	TTSAA	1 cut(s)	205
AleI	CACNNNNGTG	1 cut(s)	246
AluBI	AGCT	1 cut(s)	221
AluI	AGCT	1 cut(s)	221
Alw21I	GWGCWC	1 cut(s)	223
AlwI	GGATC	1 cut(s)	362
AoxI	GGCC	3 cut(s)	83, 124, 271
AspS9I	GGNCC	6 cut(s)	83, 124, 185, 211, 272, 326
AsuC2I	CCSGG	1 cut(s)	123
AsuHPI	GGTGA	3 cut(s)	22, 167, 260
AvaII	GGWCC	3 cut(s)	185, 211, 326
BanII	GRGCYC	2 cut(s)	117, 223
Bbv12I	GWGCWC	1 cut(s)	223
BbvCI	CCTCAGC	1 cut(s)	288
BccI	CCATC	1 cut(s)	272
BciVI	GTATCC	1 cut(s)	67
BcnI	CCSGG	1 cut(s)	123
BfaI	CTAG	1 cut(s)	461
BfrI	CTTAAG	1 cut(s)	299
BfuAI	ACCTGC	1 cut(s)	236
BfuI	GTATCC	1 cut(s)	67
Bme1390I	CCNGG	1 cut(s)	123
Bme18I	GGWCC	3 cut(s)	185, 211, 326
BmgT120I	GGNCC	6 cut(s)	83, 124, 185, 211, 272, 326
BmrFI	CCNGG	1 cut(s)	123
BmrI	ACTGGG	2 cut(s)	120, 423
BmuI	ACTGGG	2 cut(s)	120, 423
Bpu10I	CCTNAGC	1 cut(s)	288
BpuMI	CCSGG	1 cut(s)	123
BsaJI	CCNNGG	2 cut(s)	49, 214
BsaWI	WCCGGW	1 cut(s)	32
BsaXI	ACNNNNNCTCC	2 cut(s)	417, 447
Bsc4I	CCNNNNNNNGG	2 cut(s)	323, 342
Bse1I	ACTGG	4 cut(s)	115, 187, 311, 418
BseDI	CCNNGG	2 cut(s)	49, 214
BseGI	GGATG	1 cut(s)	443
BseLI	CCNNNNNNNGG	2 cut(s)	323, 342
BseMII	CTCAG	2 cut(s)	279, 415
BseNI	ACTGG	4 cut(s)	115, 187, 311, 418
BshFI	GGCC	3 cut(s)	85, 126, 273
BsiHKAI	GWGCWC	1 cut(s)	223
BsiSI	CCGG	2 cut(s)	33, 122
BslI	CCNNNNNNNGG	2 cut(s)	323, 342
BsmI	GAATGC	1 cut(s)	424
BsnI	GGCC	3 cut(s)	85, 126, 273
Bsp1286I	GDGCHC	2 cut(s)	117, 223
Bsp143I	GATC	2 cut(s)	367, 376
Bsp19I	CCATGG	1 cut(s)	214
BspACI	CCGC	2 cut(s)	81, 324
BspANI	GGCC	3 cut(s)	85, 126, 273
BspCNI	CTCAG	2 cut(s)	280, 414
BspMI	ACCTGC	1 cut(s)	236
BspPI	GGATC	1 cut(s)	362
BspTI	CTTAAG	1 cut(s)	299
BsrI	ACTGG	4 cut(s)	115, 187, 311, 418
BssECI	CCNNGG	2 cut(s)	49, 214
BssMI	GATC	2 cut(s)	367, 376
BssT1I	CCWWGG	1 cut(s)	214
Bst6I	CTCTTC	1 cut(s)	63
BstAFI	CTTAAG	1 cut(s)	299
BstC8I	GCNNGC	3 cut(s)	83, 271, 363
BstDEI	CTNAG	3 cut(s)	288, 320, 401
BstDSI	CCRYGG	1 cut(s)	214
BstF5I	GGATG	1 cut(s)	443
BstKTI	GATC	2 cut(s)	370, 379
BstMBI	GATC	2 cut(s)	367, 376
BstNSI	RCATGY	1 cut(s)	365
BstSCI	CCNGG	1 cut(s)	121
BsuI	GTATCC	1 cut(s)	67
BsuRI	GGCC	3 cut(s)	85, 126, 273
BtgI	CCRYGG	1 cut(s)	214
BtsCI	GGATG	1 cut(s)	443
BtsIMutI	CAGTG	1 cut(s)	180
BveI	ACCTGC	1 cut(s)	236
Cac8I	GCNNGC	3 cut(s)	83, 271, 363
Cfr13I	GGNCC	6 cut(s)	83, 124, 185, 211, 272, 326
CseI	GACGC	1 cut(s)	227
CviAII	CATG	4 cut(s)	131, 215, 362, 395
CviJI	RGCY	7 cut(s)	54, 85, 115, 126, 221, 273, 464
CviKI_1	RGCY	7 cut(s)	54, 85, 115, 126, 221, 273, 464
DdeI	CTNAG	3 cut(s)	288, 320, 401
DpnI	GATC	2 cut(s)	369, 378
DpnII	GATC	2 cut(s)	367, 376
Eam1104I	CTCTTC	1 cut(s)	63
EarI	CTCTTC	1 cut(s)	63
Ecl136II	GAGCTC	1 cut(s)	221
Eco130I	CCWWGG	1 cut(s)	214
Eco24I	GRGCYC	2 cut(s)	117, 223
Eco47I	GGWCC	3 cut(s)	185, 211, 326
Eco53kI	GAGCTC	1 cut(s)	221
Eco57I	CTGAAG	1 cut(s)	210
EcoICRI	GAGCTC	1 cut(s)	221
EcoT14I	CCWWGG	1 cut(s)	214
EcoT38I	GRGCYC	2 cut(s)	117, 223
ErhI	CCWWGG	1 cut(s)	214
FaeI	CATG	4 cut(s)	134, 218, 365, 398
FaiI	YATR	6 cut(s)	132, 141, 216, 363, 396, 446
FatI	CATG	4 cut(s)	130, 214, 361, 394
FauI	CCCGC	1 cut(s)	74
FokI	GGATG	1 cut(s)	450
FriOI	GRGCYC	2 cut(s)	117, 223
FspBI	CTAG	1 cut(s)	461
HaeIII	GGCC	3 cut(s)	85, 126, 273
HapII	CCGG	2 cut(s)	33, 122
HgaI	GACGC	1 cut(s)	227
Hin1II	CATG	4 cut(s)	134, 218, 365, 398
HinfI	GANTC	2 cut(s)	38, 313
HpaII	CCGG	2 cut(s)	33, 122
HphI	GGTGA	3 cut(s)	22, 167, 260
Hpy166II	GTNNAC	1 cut(s)	392
Hpy188I	TCNGA	2 cut(s)	50, 229
Hpy188III	TCNNGA	2 cut(s)	71, 371
Hpy8I	GTNNAC	1 cut(s)	392
HpyAV	CCTTC	3 cut(s)	137, 202, 234
HpyCH4IV	ACGT	1 cut(s)	261
HpyCH4V	TGCA	4 cut(s)	174, 269, 361, 422
HpyF3I	CTNAG	3 cut(s)	288, 320, 401
HpySE526I	ACGT	1 cut(s)	261
Hsp92II	CATG	4 cut(s)	134, 218, 365, 398
Kzo9I	GATC	2 cut(s)	367, 376
LmnI	GCTCC	4 cut(s)	218, 226, 235, 425
MaeI	CTAG	1 cut(s)	461
MaeII	ACGT	1 cut(s)	261
MaeIII	GTNAC	2 cut(s)	239, 257
MalI	GATC	2 cut(s)	369, 378
MboI	GATC	2 cut(s)	367, 376
MboII	GAAGA	2 cut(s)	50, 217
MhlI	GDGCHC	2 cut(s)	117, 223
MluCI	AATT	2 cut(s)	105, 175
MmeI	TCCRAC	1 cut(s)	415
MnlI	CCTC	6 cut(s)	44, 172, 198, 283, 339, 339
MseI	TTAA	2 cut(s)	195, 300
MslI	CAYNNNNRTG	1 cut(s)	246
MspA1I	CMGCKG	1 cut(s)	81
MspCI	CTTAAG	1 cut(s)	299
MspI	CCGG	2 cut(s)	33, 122
MspR9I	CCNGG	1 cut(s)	123
Mva1269I	GAATGC	1 cut(s)	424
NciI	CCSGG	1 cut(s)	123
NcoI	CCATGG	1 cut(s)	214
NdeII	GATC	2 cut(s)	367, 376
NlaIII	CATG	4 cut(s)	134, 218, 365, 398
NmuCI	GTSAC	1 cut(s)	239
NspI	RCATGY	1 cut(s)	365
OliI	CACNNNNGTG	1 cut(s)	246
PaeI	GCATGC	1 cut(s)	365
PaqCI	CACCTGC	1 cut(s)	236
PctI	GAATGC	1 cut(s)	424
PfeI	GAWTC	2 cut(s)	38, 313
Psp124BI	GAGCTC	1 cut(s)	223
Psp1406I	AACGTT	1 cut(s)	261
PspPI	GGNCC	6 cut(s)	83, 124, 185, 211, 272, 326
RseI	CAYNNNNRTG	1 cut(s)	246
SacI	GAGCTC	1 cut(s)	223
SaqAI	TTAA	2 cut(s)	195, 300
Sau3AI	GATC	2 cut(s)	367, 376
Sau96I	GGNCC	6 cut(s)	83, 124, 185, 211, 272, 326
ScrFI	CCNGG	1 cut(s)	123
SduI	GDGCHC	2 cut(s)	117, 223
SetI	ASST	8 cut(s)	164, 190, 223, 250, 264, 294, 331, 391
SinI	GGWCC	3 cut(s)	185, 211, 326
SmiMI	CAYNNNNRTG	1 cut(s)	246
SmlI	CTYRAG	1 cut(s)	299
SmoI	CTYRAG	1 cut(s)	299
SphI	GCATGC	1 cut(s)	365
Sse9I	AATT	2 cut(s)	105, 175
SsiI	CCGC	2 cut(s)	81, 324
SspMI	CTAG	1 cut(s)	461
SstI	GAGCTC	1 cut(s)	223
StyD4I	CCNGG	1 cut(s)	121
StyI	CCWWGG	1 cut(s)	214
TaiI	ACGT	1 cut(s)	264
TasI	AATT	2 cut(s)	105, 175
TfiI	GAWTC	2 cut(s)	38, 313
Tru1I	TTAA	2 cut(s)	195, 300
Tru9I	TTAA	2 cut(s)	195, 300
TscAI	CASTG	1 cut(s)	187
TseFI	GTSAC	1 cut(s)	239
Tsp45I	GTSAC	1 cut(s)	239
TspDTI	ATGAA	3 cut(s)	50, 119, 411
TspRI	CASTG	1 cut(s)	187
Vha464I	CTTAAG	1 cut(s)	299
VpaK11BI	GGWCC	3 cut(s)	185, 211, 326
XceI	RCATGY	1 cut(s)	365
XspI	CTAG	1 cut(s)	461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.