Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0012754

Physical Location & Seq

Genomic Coordinates Forward (+)

45905285 .. 45908365

Gene Structure 3081 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG365300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGGGGAGAAGGAAATGGGCAGTGTGAAAGCAGTGGCTGTAATCAGCGGGGGAGATAAGTGCCCCCTGCTCAGAGGCGCTCTTCAATTCGTGCAGGGTCCCCAAGGGCCAACCCATGTTAGAGGAAAAATTAGTGGCCTCTCTCCTGGCCTTCATGGCTTCCATATTCACGCTCTTGGTGATACCTCCAACGGCTGCAATTCCACTGGACCTCACTTCAATCCACTGAACAAGGCCCATGGAGCTCCTTCAGACACGGACCGTCACGCCGGTGATTTGGGTAACGTCACTGCAGGCCCAGATGGAGTTGCTGAGGTTTCTGTTGACGACTGGCAGATTCCACTAAGCGGACCTCATTCCATTCTTGGGAGGGCGGTTGTAGTGCATGCTGACCCTGATGATCTTGGCAAAGGTATGATATATAGTACAATACTTGAATTTTTATTATCTTTCCAGTTTTTGCTCTTGTTGCTTTTCTTTTTCTTTTTAGCTGCATCTCTCTATTTTATTCTGTGGTTTTTTTTCCCATACATTTCTACATCTGGAGTTGCAGTTGGGAACCTTCTCCCACACATTCAAATCCATATTTATCTTTTCTTTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000303 GO:0000305 GO:0001101 GO:0003674 GO:0003824 GO:0004784 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0006801 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0008270 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009636 GO:0009642 GO:0009644 GO:0009651 GO:0009987 GO:0010035 GO:0010193 GO:0010224 GO:0016209 GO:0016491 GO:0016721 GO:0019430 GO:0033554 GO:0034599 GO:0034614 GO:0034644 GO:0035690 GO:0042221 GO:0042493 GO:0042579 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0046872 GO:0046914 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071214 GO:0071229 GO:0071236 GO:0071450 GO:0071451 GO:0071457 GO:0071470 GO:0071472 GO:0071478 GO:0071482 GO:0071484 GO:0071486 GO:0071493 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:0104004 GO:1901700 GO:1901701 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04146 ko04213 ko05014 ko05016 ko05020 map04146 map04213 map05014 map05016 map05020

Pfam Domains

Protein Families

Sod_Cu

Protein Analysis

201

Amino Acids

21.56

Weight (kDa)

6.07

Isoelectric Point (pI)

21.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sod_Cu	PF00080	25 - 137	8.3e-41	Copper/zinc superoxide dismutase (SODC)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012754)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18100 AT5G18100
fragaria_vesca	FvH4_1g28280
malus_domestica	MD12G1004800.v1.1 MD14G1003300.v1.1
prunus_persica	Prupe.7G005300_v2.0.a1 Prupe.7G005300_v2.0.a1 Prupe.7G005300_v2.0.a1
pyrus_communis	pycom12g00390 pycom14g00120
rosa_chinensis	RchiOBHm_Chr3g0496871
rosa_multiflora	Rmu_sc0001438.1_g000032
rosa_roxburghii	Rroxscaffold_6G00388610
rosa_samantha	Rh3AG332200 Rh3BG368900 Rh3CG365300 Rh3DG368200
rosa_wichuraiana	Rw3G029120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	48, 348, 374
AcsI	RAATTY	1 cut(s)	437
AcuI	CTGAAG	1 cut(s)	234
AfaI	GTAC	1 cut(s)	427
AfiI	CCNNNNNNNGG	2 cut(s)	347, 366
AgsI	TTSAA	4 cut(s)	86, 220, 437, 578
AjnI	CCWGG	1 cut(s)	145
AleI	CACNNNNGTG	1 cut(s)	270
AluBI	AGCT	2 cut(s)	245, 491
AluI	AGCT	2 cut(s)	245, 491
Alw21I	GWGCWC	1 cut(s)	247
AlwNI	CAGNNNCTG	1 cut(s)	38
AoxI	GGCC	5 cut(s)	107, 136, 148, 234, 295
ApeKI	GCWGC	2 cut(s)	195, 491
ApoI	RAATTY	1 cut(s)	437
AspLEI	GCGC	1 cut(s)	80
AspS9I	GGNCC	7 cut(s)	98, 107, 209, 235, 259, 296, 350
AsuHPI	GGTGA	2 cut(s)	191, 284
AvaII	GGWCC	4 cut(s)	98, 209, 259, 350
BaeGI	GKGCMC	1 cut(s)	65
BanII	GRGCYC	1 cut(s)	247
Bbv12I	GWGCWC	1 cut(s)	247
BbvCI	CCTCAGC	1 cut(s)	312
BbvI	GCAGC	2 cut(s)	182, 478
BccI	CCATC	1 cut(s)	296
BceAI	ACGGC	1 cut(s)	208
BciT130I	CCWGG	1 cut(s)	147
BfmI	CTRYAG	1 cut(s)	291
BfoI	RGCGCY	1 cut(s)	81
BglI	GCCNNNNNGGC	1 cut(s)	156
BisI	GCNGC	2 cut(s)	196, 492
BlsI	GCNGC	2 cut(s)	197, 493
Bme1390I	CCNGG	1 cut(s)	147
Bme18I	GGWCC	4 cut(s)	98, 209, 259, 350
BmgT120I	GGNCC	7 cut(s)	98, 107, 209, 235, 259, 296, 350
BmiI	GGNNCC	3 cut(s)	99, 100, 560
BmrFI	CCNGG	1 cut(s)	147
BmsI	GCATC	1 cut(s)	503
BpmI	CTGGAG	1 cut(s)	564
Bpu10I	CCTNAGC	1 cut(s)	312
BsaJI	CCNNGG	2 cut(s)	103, 238
BsaXI	ACNNNNNCTCC	2 cut(s)	537, 567
Bsc4I	CCNNNNNNNGG	2 cut(s)	347, 366
Bse118I	RCCGGY	1 cut(s)	269
Bse1I	ACTGG	3 cut(s)	211, 335, 454
BseBI	CCWGG	1 cut(s)	147
BseDI	CCNNGG	2 cut(s)	103, 238
BseLI	CCNNNNNNNGG	2 cut(s)	347, 366
BseMII	CTCAG	2 cut(s)	85, 303
BseNI	ACTGG	3 cut(s)	211, 335, 454
BseSI	GKGCMC	1 cut(s)	65
BseXI	GCAGC	2 cut(s)	182, 478
BsgI	GTGCAG	1 cut(s)	113
BshFI	GGCC	5 cut(s)	109, 138, 150, 236, 297
BsiHKAI	GWGCWC	1 cut(s)	247
BsiSI	CCGG	1 cut(s)	270
BslFI	GGGAC	1 cut(s)	84
BslI	CCNNNNNNNGG	2 cut(s)	347, 366
BsmFI	GGGAC	1 cut(s)	84
BsnI	GGCC	5 cut(s)	109, 138, 150, 236, 297
Bsp1286I	GDGCHC	2 cut(s)	65, 247
Bsp143I	GATC	1 cut(s)	400
Bsp19I	CCATGG	1 cut(s)	238
BspACI	CCGC	3 cut(s)	48, 348, 374
BspANI	GGCC	5 cut(s)	109, 138, 150, 236, 297
BspCNI	CTCAG	2 cut(s)	84, 304
BspLI	GGNNCC	3 cut(s)	99, 100, 560
BspMAI	CTGCAG	1 cut(s)	295
BspQI	GCTCTTC	1 cut(s)	87
BsrFI	RCCGGY	1 cut(s)	269
BsrI	ACTGG	3 cut(s)	211, 335, 454
BssAI	RCCGGY	1 cut(s)	269
BssECI	CCNNGG	2 cut(s)	103, 238
BssMI	GATC	1 cut(s)	400
BssT1I	CCWWGG	2 cut(s)	103, 238
Bst2UI	CCWGG	1 cut(s)	147
Bst4CI	ACNGT	1 cut(s)	263
Bst6I	CTCTTC	1 cut(s)	87
BstC8I	GCNNGC	2 cut(s)	295, 387
BstDEI	CTNAG	3 cut(s)	71, 312, 344
BstDSI	CCRYGG	1 cut(s)	238
BstH2I	RGCGCY	1 cut(s)	81
BstHHI	GCGC	1 cut(s)	80
BstKTI	GATC	1 cut(s)	403
BstMBI	GATC	1 cut(s)	400
BstMWI	GCNNNNNNNGC	3 cut(s)	156, 242, 469
BstNI	CCWGG	1 cut(s)	147
BstNSI	RCATGY	1 cut(s)	389
BstSCI	CCNGG	1 cut(s)	145
BstSFI	CTRYAG	1 cut(s)	291
BstSLI	GKGCMC	1 cut(s)	65
BstV1I	GCAGC	2 cut(s)	182, 478
BsuRI	GGCC	5 cut(s)	109, 138, 150, 236, 297
BtgI	CCRYGG	1 cut(s)	238
BtsI	GCAGTG	3 cut(s)	28, 39, 288
BtsIMutI	CAGTG	5 cut(s)	28, 39, 204, 224, 288
Cac8I	GCNNGC	2 cut(s)	295, 387
CaiI	CAGNNNCTG	1 cut(s)	38
CfoI	GCGC	1 cut(s)	80
Cfr10I	RCCGGY	1 cut(s)	269
Cfr13I	GGNCC	7 cut(s)	98, 107, 209, 235, 259, 296, 350
CpoI	CGGWCCG	1 cut(s)	259
Csp6I	GTAC	1 cut(s)	426
CspI	CGGWCCG	1 cut(s)	259
CviAII	CATG	4 cut(s)	116, 155, 239, 386
CviQI	GTAC	1 cut(s)	426
DdeI	CTNAG	3 cut(s)	71, 312, 344
DpnI	GATC	1 cut(s)	402
DpnII	GATC	1 cut(s)	400
Eam1104I	CTCTTC	1 cut(s)	87
EarI	CTCTTC	1 cut(s)	87
Ecl136II	GAGCTC	1 cut(s)	245
Eco130I	CCWWGG	2 cut(s)	103, 238
Eco24I	GRGCYC	1 cut(s)	247
Eco47I	GGWCC	4 cut(s)	98, 209, 259, 350
Eco53kI	GAGCTC	1 cut(s)	245
Eco57I	CTGAAG	1 cut(s)	234
EcoICRI	GAGCTC	1 cut(s)	245
EcoO109I	RGGNCCY	1 cut(s)	98
EcoRII	CCWGG	1 cut(s)	145
EcoT14I	CCWWGG	2 cut(s)	103, 238
EcoT38I	GRGCYC	1 cut(s)	247
ErhI	CCWWGG	2 cut(s)	103, 238
FaeI	CATG	4 cut(s)	119, 158, 242, 389
FaqI	GGGAC	1 cut(s)	84
FatI	CATG	4 cut(s)	115, 154, 238, 385
FauI	CCCGC	1 cut(s)	41
Fnu4HI	GCNGC	2 cut(s)	196, 492
FriOI	GRGCYC	1 cut(s)	247
Fsp4HI	GCNGC	2 cut(s)	196, 492
GlaI	GCGC	1 cut(s)	79
GluI	GCNGC	2 cut(s)	196, 492
GsuI	CTGGAG	1 cut(s)	564
HaeII	RGCGCY	1 cut(s)	81
HaeIII	GGCC	5 cut(s)	109, 138, 150, 236, 297
HapII	CCGG	1 cut(s)	270
HhaI	GCGC	1 cut(s)	80
Hin1II	CATG	4 cut(s)	119, 158, 242, 389
Hin6I	GCGC	1 cut(s)	78
HinP1I	GCGC	1 cut(s)	78
HincII	GTYRAC	1 cut(s)	325
HindII	GTYRAC	1 cut(s)	325
HinfI	GANTC	1 cut(s)	337
HpaII	CCGG	1 cut(s)	270
HphI	GGTGA	2 cut(s)	191, 284
Hpy166II	GTNNAC	1 cut(s)	325
Hpy188I	TCNGA	2 cut(s)	74, 253
Hpy188III	TCNNGA	1 cut(s)	543
Hpy8I	GTNNAC	1 cut(s)	325
HpyAV	CCTTC	4 cut(s)	4, 161, 258, 572
HpyCH4III	ACNGT	1 cut(s)	263
HpyCH4IV	ACGT	1 cut(s)	285
HpyCH4V	TGCA	6 cut(s)	94, 198, 293, 385, 494, 551
HpyF10VI	GCNNNNNNNGC	3 cut(s)	156, 242, 469
HpyF3I	CTNAG	3 cut(s)	71, 312, 344
HpySE526I	ACGT	1 cut(s)	285
Hsp92II	CATG	4 cut(s)	119, 158, 242, 389
HspAI	GCGC	1 cut(s)	78
KflI	GGGWCCC	1 cut(s)	98
Kzo9I	GATC	1 cut(s)	400
LguI	GCTCTTC	1 cut(s)	87
LmnI	GCTCC	2 cut(s)	242, 250
Lsp1109I	GCAGC	2 cut(s)	182, 478
LweI	GCATC	1 cut(s)	503
MaeII	ACGT	1 cut(s)	285
MaeIII	GTNAC	3 cut(s)	263, 281, 286
MalI	GATC	1 cut(s)	402
MboI	GATC	1 cut(s)	400
MboII	GAAGA	1 cut(s)	74
MhlI	GDGCHC	2 cut(s)	65, 247
MluCI	AATT	4 cut(s)	86, 129, 199, 437
MmeI	TCCRAC	1 cut(s)	213
MnlI	CCTC	8 cut(s)	68, 116, 149, 196, 222, 307, 363, 363
MseI	TTAA	1 cut(s)	604
MslI	CAYNNNNRTG	1 cut(s)	270
MspA1I	CMGCKG	1 cut(s)	48
MspI	CCGG	1 cut(s)	270
MspR9I	CCNGG	1 cut(s)	147
MvaI	CCWGG	1 cut(s)	147
MwoI	GCNNNNNNNGC	3 cut(s)	156, 242, 469
NcoI	CCATGG	1 cut(s)	238
NdeII	GATC	1 cut(s)	400
NlaIII	CATG	4 cut(s)	119, 158, 242, 389
NlaIV	GGNNCC	3 cut(s)	99, 100, 560
NmuCI	GTSAC	2 cut(s)	263, 286
NspI	RCATGY	1 cut(s)	389
OliI	CACNNNNGTG	1 cut(s)	270
PaeI	GCATGC	1 cut(s)	389
PciSI	GCTCTTC	1 cut(s)	87
PfeI	GAWTC	1 cut(s)	337
PkrI	GCNGC	2 cut(s)	197, 493
PpuMI	RGGWCCY	1 cut(s)	98
Psp124BI	GAGCTC	1 cut(s)	247
Psp5II	RGGWCCY	1 cut(s)	98
Psp6I	CCWGG	1 cut(s)	145
PspGI	CCWGG	1 cut(s)	145
PspN4I	GGNNCC	3 cut(s)	99, 100, 560
PspPI	GGNCC	7 cut(s)	98, 107, 209, 235, 259, 296, 350
PspPPI	RGGWCCY	1 cut(s)	98
PstI	CTGCAG	1 cut(s)	295
PstNI	CAGNNNCTG	1 cut(s)	38
RsaI	GTAC	1 cut(s)	427
RsaNI	GTAC	1 cut(s)	426
RseI	CAYNNNNRTG	1 cut(s)	270
Rsr2I	CGGWCCG	1 cut(s)	259
RsrII	CGGWCCG	1 cut(s)	259
SacI	GAGCTC	1 cut(s)	247
SapI	GCTCTTC	1 cut(s)	87
SaqAI	TTAA	1 cut(s)	604
SatI	GCNGC	2 cut(s)	196, 492
Sau3AI	GATC	1 cut(s)	400
Sau96I	GGNCC	7 cut(s)	98, 107, 209, 235, 259, 296, 350
ScrFI	CCNGG	1 cut(s)	147
SduI	GDGCHC	2 cut(s)	65, 247
SetI	ASST	9 cut(s)	188, 214, 247, 288, 318, 355, 415, 493, 564
SfaNI	GCATC	1 cut(s)	503
SfcI	CTRYAG	1 cut(s)	291
SgrAI	CRCCGGYG	1 cut(s)	269
SinI	GGWCC	4 cut(s)	98, 209, 259, 350
SmiMI	CAYNNNNRTG	1 cut(s)	270
SphI	GCATGC	1 cut(s)	389
Sse9I	AATT	4 cut(s)	86, 129, 199, 437
SsiI	CCGC	3 cut(s)	48, 348, 374
SstI	GAGCTC	1 cut(s)	247
StyD4I	CCNGG	1 cut(s)	145
StyI	CCWWGG	2 cut(s)	103, 238
TaaI	ACNGT	1 cut(s)	263
TaiI	ACGT	1 cut(s)	288
TasI	AATT	4 cut(s)	86, 129, 199, 437
TatI	WGTACW	1 cut(s)	425
TfiI	GAWTC	1 cut(s)	337
Tru1I	TTAA	1 cut(s)	604
Tru9I	TTAA	1 cut(s)	604
TscAI	CASTG	5 cut(s)	28, 39, 211, 231, 295
TseFI	GTSAC	2 cut(s)	263, 286
TseI	GCWGC	2 cut(s)	195, 491
Tsp45I	GTSAC	2 cut(s)	263, 286
TspDTI	ATGAA	1 cut(s)	143
TspGWI	ACGGA	1 cut(s)	272
TspRI	CASTG	5 cut(s)	28, 39, 211, 231, 295
VpaK11BI	GGWCC	4 cut(s)	98, 209, 259, 350
XapI	RAATTY	1 cut(s)	437
XceI	RCATGY	1 cut(s)	389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.