Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0012754

Physical Location & Seq

Genomic Coordinates Forward (+)

410969 .. 413818

Gene Structure 2850 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1003300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGAAAAAATTGAAAAGCGGCATAAGGGGCAGCGGAAGCAGCGGAGGGAATCAAATGGCTAGTGTGAAAGCGGTGGCTCTTATGACCGGAGATTCCAACGTCCGAGGCTCCCTTCATTTCCTTCAGGCATCCACCGGGCCTACGCACATACAGGGGAGGATTAGTGGCCTCTCTCCCGGCCTTCATGGTTTCCATATCCATGCTCTTGGTGATACCTCCAATGGTTGCAATTCCACTGGACCTCATTTTAATCCACTGAAGAAGGAGCATGGAGCTCCTTCAGATAAGGAGCGTCACGCCGGCGATTTGGGTAACATTGTTGCCGGCCAAGATGGAGTTGCTGAGGTTTCTCTCCAGGACTGGCTGATTCCACTAAGCGGACCTAATTCAATTCTTGGGCGAGCAGTTGTAGTGCACGCTGATCCTAATGATCTTGGTAAAGGTGGACATGAACTTAGCAAGACTACTGGGAACGCAGGAGCAAGAGTTGGATGTGGTATCATTGGCCTTAAGTCATCTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000303 GO:0000305 GO:0001101 GO:0003674 GO:0003824 GO:0004784 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0006801 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0008270 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009636 GO:0009642 GO:0009644 GO:0009651 GO:0009987 GO:0010035 GO:0010193 GO:0010224 GO:0016209 GO:0016491 GO:0016721 GO:0019430 GO:0033554 GO:0034599 GO:0034614 GO:0034644 GO:0035690 GO:0042221 GO:0042493 GO:0042579 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0046872 GO:0046914 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071214 GO:0071229 GO:0071236 GO:0071450 GO:0071451 GO:0071457 GO:0071470 GO:0071472 GO:0071478 GO:0071482 GO:0071484 GO:0071486 GO:0071493 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:0104004 GO:1901700 GO:1901701 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04146 ko04213 ko05014 ko05016 ko05020 map04146 map04213 map05014 map05016 map05020

Pfam Domains

Protein Families

Sod_Cu

Protein Analysis

175

Amino Acids

17.63

Weight (kDa)

9.3

Isoelectric Point (pI)

20.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sod_Cu	PF00080	34 - 168	1.5e-48	Copper/zinc superoxide dismutase (SODC)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012754)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18100 AT5G18100
fragaria_vesca	FvH4_1g28280
malus_domestica	MD12G1004800.v1.1 MD14G1003300.v1.1
prunus_persica	Prupe.7G005300_v2.0.a1 Prupe.7G005300_v2.0.a1 Prupe.7G005300_v2.0.a1
pyrus_communis	pycom12g00390 pycom14g00120
rosa_chinensis	RchiOBHm_Chr3g0496871
rosa_multiflora	Rmu_sc0001438.1_g000032
rosa_roxburghii	Rroxscaffold_6G00388610
rosa_samantha	Rh3AG332200 Rh3BG368900 Rh3CG365300 Rh3DG368200
rosa_wichuraiana	Rw3G029120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	18, 33, 42, 71, 378
AclWI	GGATC	1 cut(s)	416
AcoI	YGGCCR	1 cut(s)	325
AcuI	CTGAAG	3 cut(s)	107, 264, 278
AfiI	CCNNNNNNNGG	1 cut(s)	377
AflII	CTTAAG	1 cut(s)	509
AgsI	TTSAA	2 cut(s)	13, 390
AjnI	CCWGG	1 cut(s)	354
AluBI	AGCT	1 cut(s)	275
AluI	AGCT	1 cut(s)	275
Alw21I	GWGCWC	2 cut(s)	277, 417
Alw44I	GTGCAC	1 cut(s)	413
AlwI	GGATC	1 cut(s)	416
AoxI	GGCC	5 cut(s)	137, 166, 178, 325, 505
ApaLI	GTGCAC	1 cut(s)	413
ApeKI	GCWGC	2 cut(s)	30, 39
AspS9I	GGNCC	3 cut(s)	137, 239, 380
AsuC2I	CCSGG	2 cut(s)	136, 177
AsuHPI	GGTGA	1 cut(s)	221
AvaII	GGWCC	2 cut(s)	239, 380
BaeGI	GKGCMC	1 cut(s)	417
BanII	GRGCYC	1 cut(s)	277
Bbv12I	GWGCWC	2 cut(s)	277, 417
BbvCI	CCTCAGC	1 cut(s)	342
BbvI	GCAGC	2 cut(s)	42, 51
BccI	CCATC	1 cut(s)	326
BciT130I	CCWGG	1 cut(s)	356
BcnI	CCSGG	2 cut(s)	136, 177
BfaI	CTAG	1 cut(s)	60
BfrI	CTTAAG	1 cut(s)	509
BisI	GCNGC	3 cut(s)	19, 31, 40
BlsI	GCNGC	3 cut(s)	20, 32, 41
Bme1390I	CCNGG	3 cut(s)	136, 177, 356
Bme18I	GGWCC	2 cut(s)	239, 380
BmgT120I	GGNCC	3 cut(s)	137, 239, 380
BmiI	GGNNCC	1 cut(s)	109
BmrFI	CCNGG	3 cut(s)	136, 177, 356
BmrI	ACTGGG	1 cut(s)	477
BmsI	GCATC	1 cut(s)	137
BmuI	ACTGGG	1 cut(s)	477
BpmI	CTGGAG	1 cut(s)	338
Bpu10I	CCTNAGC	1 cut(s)	342
BpuMI	CCSGG	2 cut(s)	136, 177
BsaJI	CCNNGG	1 cut(s)	103
BsaWI	WCCGGW	1 cut(s)	86
BsaXI	ACNNNNNCTCC	4 cut(s)	148, 178, 471, 501
Bsc4I	CCNNNNNNNGG	1 cut(s)	377
Bse118I	RCCGGY	2 cut(s)	299, 323
Bse1I	ACTGG	3 cut(s)	241, 365, 472
BseBI	CCWGG	1 cut(s)	356
BseDI	CCNNGG	1 cut(s)	103
BseGI	GGATG	2 cut(s)	128, 497
BseLI	CCNNNNNNNGG	1 cut(s)	377
BseMII	CTCAG	1 cut(s)	333
BseNI	ACTGG	3 cut(s)	241, 365, 472
BseSI	GKGCMC	1 cut(s)	417
BseXI	GCAGC	2 cut(s)	42, 51
BshFI	GGCC	5 cut(s)	139, 168, 180, 327, 507
BsiHKAI	GWGCWC	2 cut(s)	277, 417
BsiSI	CCGG	5 cut(s)	87, 135, 177, 300, 324
BslI	CCNNNNNNNGG	1 cut(s)	377
BsnI	GGCC	5 cut(s)	139, 168, 180, 327, 507
Bsp1286I	GDGCHC	2 cut(s)	277, 417
Bsp143I	GATC	2 cut(s)	421, 430
BspACI	CCGC	5 cut(s)	18, 33, 42, 71, 378
BspANI	GGCC	5 cut(s)	139, 168, 180, 327, 507
BspCNI	CTCAG	1 cut(s)	334
BspLI	GGNNCC	1 cut(s)	109
BspPI	GGATC	1 cut(s)	416
BspTI	CTTAAG	1 cut(s)	509
BsrFI	RCCGGY	2 cut(s)	299, 323
BsrI	ACTGG	3 cut(s)	241, 365, 472
BssAI	RCCGGY	2 cut(s)	299, 323
BssECI	CCNNGG	1 cut(s)	103
BssMI	GATC	2 cut(s)	421, 430
Bst2UI	CCWGG	1 cut(s)	356
BstAFI	CTTAAG	1 cut(s)	509
BstC8I	GCNNGC	4 cut(s)	301, 325, 402, 417
BstDEI	CTNAG	3 cut(s)	342, 374, 455
BstF5I	GGATG	2 cut(s)	128, 497
BstKTI	GATC	2 cut(s)	424, 433
BstMBI	GATC	2 cut(s)	421, 430
BstMWI	GCNNNNNNNGC	3 cut(s)	27, 36, 39
BstNI	CCWGG	1 cut(s)	356
BstSCI	CCNGG	3 cut(s)	134, 175, 354
BstSLI	GKGCMC	1 cut(s)	417
BstV1I	GCAGC	2 cut(s)	42, 51
BstXI	CCANNNNNNTGG	1 cut(s)	206
BsuRI	GGCC	5 cut(s)	139, 168, 180, 327, 507
BtsCI	GGATG	2 cut(s)	128, 497
BtsIMutI	CAGTG	2 cut(s)	234, 254
Cac8I	GCNNGC	4 cut(s)	301, 325, 402, 417
Cfr10I	RCCGGY	2 cut(s)	299, 323
Cfr13I	GGNCC	3 cut(s)	137, 239, 380
CseI	GACGC	1 cut(s)	281
CviAII	CATG	4 cut(s)	185, 200, 269, 449
DdeI	CTNAG	3 cut(s)	342, 374, 455
DpnI	GATC	2 cut(s)	423, 432
DpnII	GATC	2 cut(s)	421, 430
EaeI	YGGCCR	1 cut(s)	325
Ecl136II	GAGCTC	1 cut(s)	275
Eco24I	GRGCYC	1 cut(s)	277
Eco47I	GGWCC	2 cut(s)	239, 380
Eco53kI	GAGCTC	1 cut(s)	275
Eco57I	CTGAAG	3 cut(s)	107, 264, 278
EcoICRI	GAGCTC	1 cut(s)	275
EcoRII	CCWGG	1 cut(s)	354
EcoT38I	GRGCYC	1 cut(s)	277
FaeI	CATG	4 cut(s)	188, 203, 272, 452
FaiI	YATR	8 cut(s)	23, 83, 149, 186, 195, 201, 270, 450
FatI	CATG	4 cut(s)	184, 199, 268, 448
Fnu4HI	GCNGC	3 cut(s)	19, 31, 40
FokI	GGATG	2 cut(s)	115, 504
FriOI	GRGCYC	1 cut(s)	277
Fsp4HI	GCNGC	3 cut(s)	19, 31, 40
FspBI	CTAG	1 cut(s)	60
GluI	GCNGC	3 cut(s)	19, 31, 40
GsuI	CTGGAG	1 cut(s)	338
HaeIII	GGCC	5 cut(s)	139, 168, 180, 327, 507
HapII	CCGG	5 cut(s)	87, 135, 177, 300, 324
HgaI	GACGC	1 cut(s)	281
Hin1II	CATG	4 cut(s)	188, 203, 272, 452
HinfI	GANTC	3 cut(s)	49, 92, 367
HpaII	CCGG	5 cut(s)	87, 135, 177, 300, 324
HphI	GGTGA	1 cut(s)	221
Hpy166II	GTNNAC	2 cut(s)	415, 446
Hpy188I	TCNGA	2 cut(s)	104, 283
Hpy8I	GTNNAC	2 cut(s)	415, 446
HpyAV	CCTTC	5 cut(s)	122, 131, 191, 256, 288
HpyCH4IV	ACGT	1 cut(s)	99
HpyCH4V	TGCA	2 cut(s)	228, 415
HpyF10VI	GCNNNNNNNGC	3 cut(s)	27, 36, 39
HpyF3I	CTNAG	3 cut(s)	342, 374, 455
HpySE526I	ACGT	1 cut(s)	99
Hsp92II	CATG	4 cut(s)	188, 203, 272, 452
KroI	GCCGGC	2 cut(s)	299, 323
KroNI	GCCGGC	2 cut(s)	301, 325
Kzo9I	GATC	2 cut(s)	421, 430
LmnI	GCTCC	6 cut(s)	113, 265, 272, 280, 289, 479
Lsp1109I	GCAGC	2 cut(s)	42, 51
LweI	GCATC	1 cut(s)	137
MaeI	CTAG	1 cut(s)	60
MaeII	ACGT	1 cut(s)	99
MaeIII	GTNAC	2 cut(s)	293, 311
MalI	GATC	2 cut(s)	423, 432
MboI	GATC	2 cut(s)	421, 430
MboII	GAAGA	1 cut(s)	271
MhlI	GDGCHC	2 cut(s)	277, 417
MluCI	AATT	4 cut(s)	8, 229, 385, 390
MmeI	TCCRAC	2 cut(s)	120, 469
MnlI	CCTC	7 cut(s)	38, 98, 150, 179, 226, 252, 337
MreI	CGCCGGCG	1 cut(s)	299
MroNI	GCCGGC	2 cut(s)	299, 323
MseI	TTAA	2 cut(s)	249, 510
MslI	CAYNNNNRTG	1 cut(s)	198
MspA1I	CMGCKG	2 cut(s)	33, 42
MspCI	CTTAAG	1 cut(s)	509
MspI	CCGG	5 cut(s)	87, 135, 177, 300, 324
MspR9I	CCNGG	3 cut(s)	136, 177, 356
MvaI	CCWGG	1 cut(s)	356
MwoI	GCNNNNNNNGC	3 cut(s)	27, 36, 39
NaeI	GCCGGC	2 cut(s)	301, 325
NciI	CCSGG	2 cut(s)	136, 177
NdeII	GATC	2 cut(s)	421, 430
NgoMIV	GCCGGC	2 cut(s)	299, 323
NlaIII	CATG	4 cut(s)	188, 203, 272, 452
NlaIV	GGNNCC	1 cut(s)	109
NmuCI	GTSAC	1 cut(s)	293
PdiI	GCCGGC	2 cut(s)	301, 325
PfeI	GAWTC	3 cut(s)	49, 92, 367
PfoI	TCCNGGA	1 cut(s)	354
PkrI	GCNGC	3 cut(s)	20, 32, 41
Psp124BI	GAGCTC	1 cut(s)	277
Psp6I	CCWGG	1 cut(s)	354
PspGI	CCWGG	1 cut(s)	354
PspN4I	GGNNCC	1 cut(s)	109
PspPI	GGNCC	3 cut(s)	137, 239, 380
RseI	CAYNNNNRTG	1 cut(s)	198
SacI	GAGCTC	1 cut(s)	277
SaqAI	TTAA	2 cut(s)	249, 510
SatI	GCNGC	3 cut(s)	19, 31, 40
Sau3AI	GATC	2 cut(s)	421, 430
Sau96I	GGNCC	3 cut(s)	137, 239, 380
ScrFI	CCNGG	3 cut(s)	136, 177, 356
SduI	GDGCHC	2 cut(s)	277, 417
SetI	ASST	7 cut(s)	102, 218, 244, 277, 348, 385, 445
SfaNI	GCATC	1 cut(s)	137
SgrAI	CRCCGGYG	1 cut(s)	299
SinI	GGWCC	2 cut(s)	239, 380
SmiMI	CAYNNNNRTG	1 cut(s)	198
SmlI	CTYRAG	1 cut(s)	509
SmoI	CTYRAG	1 cut(s)	509
Sse9I	AATT	4 cut(s)	8, 229, 385, 390
SsiI	CCGC	5 cut(s)	18, 33, 42, 71, 378
SspMI	CTAG	1 cut(s)	60
SstI	GAGCTC	1 cut(s)	277
StyD4I	CCNGG	3 cut(s)	134, 175, 354
TaiI	ACGT	1 cut(s)	102
TasI	AATT	4 cut(s)	8, 229, 385, 390
TauI	GCSGC	1 cut(s)	21
TfiI	GAWTC	3 cut(s)	49, 92, 367
Tru1I	TTAA	2 cut(s)	249, 510
Tru9I	TTAA	2 cut(s)	249, 510
TscAI	CASTG	2 cut(s)	241, 261
TseFI	GTSAC	1 cut(s)	293
TseI	GCWGC	2 cut(s)	30, 39
Tsp45I	GTSAC	1 cut(s)	293
TspDTI	ATGAA	4 cut(s)	17, 104, 173, 465
TspRI	CASTG	2 cut(s)	241, 261
Vha464I	CTTAAG	1 cut(s)	509
VneI	GTGCAC	1 cut(s)	413
VpaK11BI	GGWCC	2 cut(s)	239, 380
XspI	CTAG	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.