Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0012754

Physical Location & Seq

Genomic Coordinates Forward (+)

612946 .. 619989

Gene Structure 7044 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1004800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGCTAGTGTGAAAGCAGTGGCTCTTATCATCGGAGATTCCAACGTCCGGGGCTCCCTTCATTTCCTTCAGGATTCCAACGGGGGGCCTACACACATACAGGGGAGGATTAGTGGCCTCTCTCCTGGCCTTCATGGTTTCCATATCCATGCTCTTGGTGATACCTCCAATGGTTGCAATTCCACTGGACCTCATTATAATCCACTGAAGAAGGAGCATGGAGCTCCCTCAGATAAGGAGCGTCACGCCGGCGATTTGGGTAACGTTGTTGCAGGCCCAGATGGAGTTGCTGAGGTTTCTCTCCAGGACTGGCAGATTCCACTGAGTGGACCTGATTCCATTCTTGGGCGAGCAGTCGTAGTGCACGCTGATCCTGATGATCTTGGTAAAGGTGGACATGAACTTAGCAAGACTACCGGGAACGCAGGAGCAAGAGTTGGATGTGGTATCATTGGCCTTAAGTCATCTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000303 GO:0000305 GO:0001101 GO:0003674 GO:0003824 GO:0004784 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0006801 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0008270 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009636 GO:0009642 GO:0009644 GO:0009651 GO:0009987 GO:0010035 GO:0010193 GO:0010224 GO:0016209 GO:0016491 GO:0016721 GO:0019430 GO:0033554 GO:0034599 GO:0034614 GO:0034644 GO:0035690 GO:0042221 GO:0042493 GO:0042579 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0046872 GO:0046914 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071214 GO:0071229 GO:0071236 GO:0071450 GO:0071451 GO:0071457 GO:0071470 GO:0071472 GO:0071478 GO:0071482 GO:0071484 GO:0071486 GO:0071493 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:0104004 GO:1901700 GO:1901701 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04146 ko04213 ko05014 ko05016 ko05020 map04146 map04213 map05014 map05016 map05020

Pfam Domains

Protein Families

Sod_Cu

Protein Analysis

158

Amino Acids

15.96

Weight (kDa)

6.33

Isoelectric Point (pI)

25.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sod_Cu	PF00080	16 - 151	4.1e-49	Copper/zinc superoxide dismutase (SODC)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012754)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18100 AT5G18100
fragaria_vesca	FvH4_1g28280
malus_domestica	MD12G1004800.v1.1 MD14G1003300.v1.1
prunus_persica	Prupe.7G005300_v2.0.a1 Prupe.7G005300_v2.0.a1 Prupe.7G005300_v2.0.a1
pyrus_communis	pycom12g00390 pycom14g00120
rosa_chinensis	RchiOBHm_Chr3g0496871
rosa_multiflora	Rmu_sc0001438.1_g000032
rosa_roxburghii	Rroxscaffold_6G00388610
rosa_samantha	Rh3AG332200 Rh3BG368900 Rh3CG365300 Rh3DG368200
rosa_wichuraiana	Rw3G029120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	198
AccB7I	CCANNNNNTGG	1 cut(s)	326
AclI	AACGTT	1 cut(s)	264
AclWI	GGATC	1 cut(s)	365
AcuI	CTGAAG	2 cut(s)	53, 227
AdeI	CACNNNGTG	1 cut(s)	326
AfiI	CCNNNNNNNGG	4 cut(s)	48, 84, 326, 345
AflII	CTTAAG	1 cut(s)	458
AjnI	CCWGG	2 cut(s)	124, 303
AluBI	AGCT	1 cut(s)	224
AluI	AGCT	1 cut(s)	224
Alw21I	GWGCWC	2 cut(s)	226, 366
Alw44I	GTGCAC	1 cut(s)	362
AlwI	GGATC	1 cut(s)	365
AoxI	GGCC	5 cut(s)	86, 115, 127, 274, 454
ApaLI	GTGCAC	1 cut(s)	362
AspS9I	GGNCC	4 cut(s)	86, 188, 275, 329
AsuC2I	CCSGG	2 cut(s)	50, 418
AsuHPI	GGTGA	1 cut(s)	170
AvaII	GGWCC	2 cut(s)	188, 329
BaeGI	GKGCMC	1 cut(s)	366
BanII	GRGCYC	2 cut(s)	56, 226
Bbv12I	GWGCWC	2 cut(s)	226, 366
BbvCI	CCTCAGC	1 cut(s)	291
BccI	CCATC	1 cut(s)	275
BciT130I	CCWGG	2 cut(s)	126, 305
BcnI	CCSGG	2 cut(s)	50, 418
BfaI	CTAG	1 cut(s)	6
BfrI	CTTAAG	1 cut(s)	458
Bme1390I	CCNGG	4 cut(s)	50, 126, 305, 418
Bme18I	GGWCC	2 cut(s)	188, 329
BmgT120I	GGNCC	4 cut(s)	86, 188, 275, 329
BmiI	GGNNCC	2 cut(s)	55, 87
BmrFI	CCNGG	4 cut(s)	50, 126, 305, 418
BpmI	CTGGAG	1 cut(s)	287
Bpu10I	CCTNAGC	1 cut(s)	291
BpuMI	CCSGG	2 cut(s)	50, 418
BsaJI	CCNNGG	1 cut(s)	49
BsaXI	ACNNNNNCTCC	4 cut(s)	97, 127, 420, 450
Bsc4I	CCNNNNNNNGG	4 cut(s)	48, 84, 326, 345
Bse118I	RCCGGY	1 cut(s)	248
Bse1I	ACTGG	2 cut(s)	190, 314
BseBI	CCWGG	2 cut(s)	126, 305
BseDI	CCNNGG	1 cut(s)	49
BseGI	GGATG	1 cut(s)	446
BseLI	CCNNNNNNNGG	4 cut(s)	48, 84, 326, 345
BseMII	CTCAG	3 cut(s)	243, 282, 314
BseNI	ACTGG	2 cut(s)	190, 314
BseSI	GKGCMC	1 cut(s)	366
BshFI	GGCC	5 cut(s)	88, 117, 129, 276, 456
BsiHKAI	GWGCWC	2 cut(s)	226, 366
BsiSI	CCGG	3 cut(s)	49, 249, 417
BslI	CCNNNNNNNGG	4 cut(s)	48, 84, 326, 345
BsnI	GGCC	5 cut(s)	88, 117, 129, 276, 456
Bsp1286I	GDGCHC	3 cut(s)	56, 226, 366
Bsp143I	GATC	2 cut(s)	370, 379
BspANI	GGCC	5 cut(s)	88, 117, 129, 276, 456
BspCNI	CTCAG	3 cut(s)	242, 283, 315
BspLI	GGNNCC	2 cut(s)	55, 87
BspPI	GGATC	1 cut(s)	365
BspTI	CTTAAG	1 cut(s)	458
BsrFI	RCCGGY	1 cut(s)	248
BsrI	ACTGG	2 cut(s)	190, 314
BssAI	RCCGGY	1 cut(s)	248
BssECI	CCNNGG	1 cut(s)	49
BssMI	GATC	2 cut(s)	370, 379
Bst2UI	CCWGG	2 cut(s)	126, 305
BstAFI	CTTAAG	1 cut(s)	458
BstC8I	GCNNGC	4 cut(s)	250, 274, 351, 366
BstDEI	CTNAG	4 cut(s)	229, 291, 323, 404
BstF5I	GGATG	1 cut(s)	446
BstKTI	GATC	2 cut(s)	373, 382
BstMBI	GATC	2 cut(s)	370, 379
BstNI	CCWGG	2 cut(s)	126, 305
BstSCI	CCNGG	4 cut(s)	48, 124, 303, 416
BstSLI	GKGCMC	1 cut(s)	366
BstXI	CCANNNNNNTGG	1 cut(s)	155
BsuRI	GGCC	5 cut(s)	88, 117, 129, 276, 456
BtsCI	GGATG	1 cut(s)	446
BtsI	GCAGTG	1 cut(s)	24
BtsIMutI	CAGTG	4 cut(s)	24, 183, 203, 320
Cac8I	GCNNGC	4 cut(s)	250, 274, 351, 366
Cfr10I	RCCGGY	1 cut(s)	248
Cfr13I	GGNCC	4 cut(s)	86, 188, 275, 329
CseI	GACGC	1 cut(s)	230
CviAII	CATG	4 cut(s)	134, 149, 218, 398
CviJI	RGCY	9 cut(s)	5, 23, 54, 88, 117, 129, 224, 276, 456
CviKI_1	RGCY	9 cut(s)	5, 23, 54, 88, 117, 129, 224, 276, 456
DdeI	CTNAG	4 cut(s)	229, 291, 323, 404
DpnI	GATC	2 cut(s)	372, 381
DpnII	GATC	2 cut(s)	370, 379
DraIII	CACNNNGTG	1 cut(s)	326
Ecl136II	GAGCTC	1 cut(s)	224
Eco24I	GRGCYC	2 cut(s)	56, 226
Eco47I	GGWCC	2 cut(s)	188, 329
Eco53kI	GAGCTC	1 cut(s)	224
Eco57I	CTGAAG	2 cut(s)	53, 227
EcoICRI	GAGCTC	1 cut(s)	224
EcoO109I	RGGNCCY	1 cut(s)	86
EcoRII	CCWGG	2 cut(s)	124, 303
EcoT38I	GRGCYC	2 cut(s)	56, 226
FaeI	CATG	4 cut(s)	137, 152, 221, 401
FaiI	YATR	7 cut(s)	98, 135, 144, 150, 198, 219, 399
FatI	CATG	4 cut(s)	133, 148, 217, 397
FokI	GGATG	1 cut(s)	453
FriOI	GRGCYC	2 cut(s)	56, 226
FspBI	CTAG	1 cut(s)	6
GsuI	CTGGAG	1 cut(s)	287
HaeIII	GGCC	5 cut(s)	88, 117, 129, 276, 456
HapII	CCGG	3 cut(s)	49, 249, 417
HgaI	GACGC	1 cut(s)	230
Hin1II	CATG	4 cut(s)	137, 152, 221, 401
HinfI	GANTC	4 cut(s)	38, 74, 316, 335
HpaII	CCGG	3 cut(s)	49, 249, 417
HphI	GGTGA	1 cut(s)	170
Hpy166II	GTNNAC	3 cut(s)	329, 364, 395
Hpy188I	TCNGA	2 cut(s)	35, 232
Hpy188III	TCNNGA	2 cut(s)	71, 374
Hpy8I	GTNNAC	3 cut(s)	329, 364, 395
HpyAV	CCTTC	4 cut(s)	68, 77, 140, 205
HpyCH4IV	ACGT	2 cut(s)	45, 264
HpyCH4V	TGCA	3 cut(s)	177, 272, 364
HpyF3I	CTNAG	4 cut(s)	229, 291, 323, 404
HpySE526I	ACGT	2 cut(s)	45, 264
Hsp92II	CATG	4 cut(s)	137, 152, 221, 401
KroI	GCCGGC	1 cut(s)	248
KroNI	GCCGGC	1 cut(s)	250
Kzo9I	GATC	2 cut(s)	370, 379
LmnI	GCTCC	6 cut(s)	59, 214, 221, 229, 238, 428
MaeI	CTAG	1 cut(s)	6
MaeII	ACGT	2 cut(s)	45, 264
MaeIII	GTNAC	2 cut(s)	242, 260
MalI	GATC	2 cut(s)	372, 381
MboI	GATC	2 cut(s)	370, 379
MboII	GAAGA	1 cut(s)	220
MhlI	GDGCHC	3 cut(s)	56, 226, 366
MluCI	AATT	1 cut(s)	178
MmeI	TCCRAC	3 cut(s)	66, 102, 418
MnlI	CCTC	6 cut(s)	99, 128, 175, 201, 238, 286
MreI	CGCCGGCG	1 cut(s)	248
MroNI	GCCGGC	1 cut(s)	248
MseI	TTAA	1 cut(s)	459
MslI	CAYNNNNRTG	1 cut(s)	147
MspCI	CTTAAG	1 cut(s)	458
MspI	CCGG	3 cut(s)	49, 249, 417
MspR9I	CCNGG	4 cut(s)	50, 126, 305, 418
MvaI	CCWGG	2 cut(s)	126, 305
NaeI	GCCGGC	1 cut(s)	250
NciI	CCSGG	2 cut(s)	50, 418
NdeII	GATC	2 cut(s)	370, 379
NgoMIV	GCCGGC	1 cut(s)	248
NlaIII	CATG	4 cut(s)	137, 152, 221, 401
NlaIV	GGNNCC	2 cut(s)	55, 87
NmuCI	GTSAC	1 cut(s)	242
PdiI	GCCGGC	1 cut(s)	250
PfeI	GAWTC	4 cut(s)	38, 74, 316, 335
PflMI	CCANNNNNTGG	1 cut(s)	326
PfoI	TCCNGGA	1 cut(s)	303
PsiI	TTATAA	1 cut(s)	198
Psp124BI	GAGCTC	1 cut(s)	226
Psp1406I	AACGTT	1 cut(s)	264
Psp6I	CCWGG	2 cut(s)	124, 303
PspGI	CCWGG	2 cut(s)	124, 303
PspN4I	GGNNCC	2 cut(s)	55, 87
PspPI	GGNCC	4 cut(s)	86, 188, 275, 329
RseI	CAYNNNNRTG	1 cut(s)	147
SacI	GAGCTC	1 cut(s)	226
SaqAI	TTAA	1 cut(s)	459
Sau3AI	GATC	2 cut(s)	370, 379
Sau96I	GGNCC	4 cut(s)	86, 188, 275, 329
ScrFI	CCNGG	4 cut(s)	50, 126, 305, 418
SduI	GDGCHC	3 cut(s)	56, 226, 366
SetI	ASST	8 cut(s)	48, 167, 193, 226, 267, 297, 334, 394
SgrAI	CRCCGGYG	1 cut(s)	248
SinI	GGWCC	2 cut(s)	188, 329
SmiMI	CAYNNNNRTG	1 cut(s)	147
SmlI	CTYRAG	1 cut(s)	458
SmoI	CTYRAG	1 cut(s)	458
Sse9I	AATT	1 cut(s)	178
SspMI	CTAG	1 cut(s)	6
SstI	GAGCTC	1 cut(s)	226
StyD4I	CCNGG	4 cut(s)	48, 124, 303, 416
TaiI	ACGT	2 cut(s)	48, 267
TasI	AATT	1 cut(s)	178
TfiI	GAWTC	4 cut(s)	38, 74, 316, 335
Tru1I	TTAA	1 cut(s)	459
Tru9I	TTAA	1 cut(s)	459
TscAI	CASTG	4 cut(s)	24, 190, 210, 327
TseFI	GTSAC	1 cut(s)	242
Tsp45I	GTSAC	1 cut(s)	242
TspDTI	ATGAA	3 cut(s)	50, 122, 414
TspRI	CASTG	4 cut(s)	24, 190, 210, 327
Van91I	CCANNNNNTGG	1 cut(s)	326
Vha464I	CTTAAG	1 cut(s)	458
VneI	GTGCAC	1 cut(s)	362
VpaK11BI	GGWCC	2 cut(s)	188, 329
XspI	CTAG	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.