AT5G18540

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0012182
Physical Location & Seq
Forward (+)
6153785 .. 6156309
2525 bp
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UTR
Exon/CDS
Intron
AT5G18540.2

Sequence Viewer

Length: 507 bp
ATGGGAGGAGGAGCGATTGACGAGGAGCTGACAGAAGATGAGAAGAGAGCTCTCAGAGGAAGCAAATTCGCTCCTCTTACTTCTCTTCCTTCGTCTTCTCGCTCTAAGCCTCCCAGATTGGCTCATCCAGGTGGACCATTGAAGACGAATAAAGCGGCGGCTTTAGCCAAGTTTCTAGAGAGGAAGCTGCAAGATCCTAATGGGTTAGCTTCCATTGATCCAGCTCTTGTCGAATTGGCCGTCAAAAACGCCAAAGACACTGTTATTTCGAGTGGGGCCTCGAGTTCAGGAAGAAGAATTCAACACGTTGCTTCATTCGAAGATGTCGAGGTATCTTCTGATGACGATAAGATAGAGAACACTAAGCTTAACAAAAAGAAAAAGAAGAAAAACGCAAAGAAGAAAAAAGAAGAGAAAAAGAAGAAGAAAAACAAAAAGCATAAGCAACAGATCACTGTCGATGAAGATGCCAAGTTAAAGAGACCCAATAAGAAGTTGAAGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

168

Amino Acids

18.47

Weight (kDa)

10.05

Isoelectric Point (pI)

49.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012182)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G18540 AT5G18540 AT5G18540 AT5G18540
fragaria_vesca FvH4_4g17670 FvH4_4g17670
malus_domestica MD13G1170800.v1.1
prunus_persica Prupe.1G139200_v2.0.a1
pyrus_communis pycom13g14650
rosa_chinensis RchiOBHm_Chr4g0421611
rosa_laevigata RLG00000007664
rosa_multiflora Rmu_ssc0000097.1_g000003
rosa_roxburghii Rroxscaffold_5G00363860
rosa_rugosa Rorug04G0173800
rosa_samantha Rh4AG233500 Rh4BG236400 Rh4CG248100 Rh4DG232300
rosa_wichuraiana Rw4G020060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 155, 158
AclWI GGATC 2 cut(s) 188, 212
AcoI YGGCCR 1 cut(s) 237
AcsI RAATTY 2 cut(s) 65, 297
AflIII ACRYGT 1 cut(s) 304
AgsI TTSAA 3 cut(s) 142, 302, 499
AjnI CCWGG 1 cut(s) 127
AluBI AGCT 7 cut(s) 28, 50, 187, 209, 224, 367, 502
AluI AGCT 7 cut(s) 28, 50, 187, 209, 224, 367, 502
Alw21I GWGCWC 1 cut(s) 52
Alw26I GTCTC 1 cut(s) 475
AlwI GGATC 2 cut(s) 188, 212
Ama87I CYCGRG 1 cut(s) 280
AoxI GGCC 2 cut(s) 237, 276
ApeKI GCWGC 1 cut(s) 187
ApoI RAATTY 2 cut(s) 65, 297
ArsI GACNNNNNNTTYG 2 cut(s) 225, 257
AspS9I GGNCC 2 cut(s) 134, 276
AsuII TTCGAA 1 cut(s) 318
AvaI CYCGRG 1 cut(s) 280
AvaII GGWCC 1 cut(s) 134
BanII GRGCYC 1 cut(s) 52
BbsI GAAGAC 2 cut(s) 87, 149
Bbv12I GWGCWC 1 cut(s) 52
BbvI GCAGC 1 cut(s) 174
BceAI ACGGC 1 cut(s) 224
BcgI CGANNNNNNTGC 2 cut(s) 449, 483
BciT130I CCWGG 1 cut(s) 129
BcoDI GTCTC 1 cut(s) 475
BfaI CTAG 1 cut(s) 176
BisI GCNGC 3 cut(s) 156, 159, 188
BlsI GCNGC 3 cut(s) 157, 160, 189
Bme1390I CCNGG 1 cut(s) 129
Bme18I GGWCC 1 cut(s) 134
BmeT110I CYCGRG 1 cut(s) 280
BmgT120I GGNCC 2 cut(s) 134, 276
BmiI GGNNCC 1 cut(s) 277
BmrFI CCNGG 1 cut(s) 129
BmsI GCATC 1 cut(s) 457
BpiI GAAGAC 2 cut(s) 87, 149
Bpu14I TTCGAA 1 cut(s) 318
BsaI GGTCTC 1 cut(s) 475
BseBI CCWGG 1 cut(s) 129
BseGI GGATG 1 cut(s) 124
BseMII CTCAG 1 cut(s) 67
BseRI GAGGAG 4 cut(s) 21, 24, 38, 63
BseXI GCAGC 1 cut(s) 174
BshFI GGCC 2 cut(s) 239, 278
BsiHKAI GWGCWC 1 cut(s) 52
BsiHKCI CYCGRG 1 cut(s) 280
BsmAI GTCTC 1 cut(s) 475
BsnI GGCC 2 cut(s) 239, 278
Bso31I GGTCTC 1 cut(s) 475
BsoBI CYCGRG 1 cut(s) 280
Bsp119I TTCGAA 1 cut(s) 318
Bsp1286I GDGCHC 1 cut(s) 52
Bsp143I GATC 3 cut(s) 193, 217, 450
BspACI CCGC 2 cut(s) 155, 158
BspANI GGCC 2 cut(s) 239, 278
BspCNI CTCAG 1 cut(s) 66
BspLI GGNNCC 1 cut(s) 277
BspPI GGATC 2 cut(s) 188, 212
BspT104I TTCGAA 1 cut(s) 318
BspTNI GGTCTC 1 cut(s) 475
BssMI GATC 3 cut(s) 193, 217, 450
Bst2UI CCWGG 1 cut(s) 129
Bst4CI ACNGT 2 cut(s) 262, 457
Bst6I CTCTTC 3 cut(s) 38, 90, 405
BstBI TTCGAA 1 cut(s) 318
BstDEI CTNAG 3 cut(s) 53, 105, 363
BstF5I GGATG 1 cut(s) 124
BstKTI GATC 3 cut(s) 196, 220, 453
BstMAI GTCTC 1 cut(s) 475
BstMBI GATC 3 cut(s) 193, 217, 450
BstMWI GCNNNNNNNGC 1 cut(s) 164
BstNI CCWGG 1 cut(s) 129
BstSCI CCNGG 1 cut(s) 127
BstV1I GCAGC 1 cut(s) 174
BstV2I GAAGAC 2 cut(s) 87, 149
BstX2I RGATCY 1 cut(s) 193
BstYI RGATCY 1 cut(s) 193
BsuRI GGCC 2 cut(s) 239, 278
BtsCI GGATG 1 cut(s) 124
BtsIMutI CAGTG 2 cut(s) 258, 453
Cfr13I GGNCC 2 cut(s) 134, 276
DdeI CTNAG 3 cut(s) 53, 105, 363
DpnI GATC 3 cut(s) 195, 219, 452
DpnII GATC 3 cut(s) 193, 217, 450
EaeI YGGCCR 1 cut(s) 237
Eam1104I CTCTTC 3 cut(s) 38, 90, 405
EarI CTCTTC 3 cut(s) 38, 90, 405
Ecl136II GAGCTC 1 cut(s) 50
Eco24I GRGCYC 1 cut(s) 52
Eco31I GGTCTC 1 cut(s) 475
Eco47I GGWCC 1 cut(s) 134
Eco53kI GAGCTC 1 cut(s) 50
Eco88I CYCGRG 1 cut(s) 280
EcoICRI GAGCTC 1 cut(s) 50
EcoO109I RGGNCCY 1 cut(s) 276
EcoRI GAATTC 1 cut(s) 297
EcoRII CCWGG 1 cut(s) 127
EcoT38I GRGCYC 1 cut(s) 52
FaiI YATR 1 cut(s) 441
Fnu4HI GCNGC 3 cut(s) 156, 159, 188
FokI GGATG 1 cut(s) 111
FriOI GRGCYC 1 cut(s) 52
Fsp4HI GCNGC 3 cut(s) 156, 159, 188
FspBI CTAG 1 cut(s) 176
GluI GCNGC 3 cut(s) 156, 159, 188
HaeIII GGCC 2 cut(s) 239, 278
HindIII AAGCTT 2 cut(s) 365, 500
Hpy166II GTNNAC 1 cut(s) 134
Hpy188I TCNGA 2 cut(s) 56, 340
Hpy188III TCNNGA 2 cut(s) 176, 288
Hpy8I GTNNAC 1 cut(s) 134
HpyAV CCTTC 1 cut(s) 99
HpyCH4III ACNGT 2 cut(s) 262, 457
HpyCH4IV ACGT 1 cut(s) 306
HpyCH4V TGCA 1 cut(s) 190
HpyF10VI GCNNNNNNNGC 1 cut(s) 164
HpyF3I CTNAG 3 cut(s) 53, 105, 363
HpySE526I ACGT 1 cut(s) 306
Kzo9I GATC 3 cut(s) 193, 217, 450
LmnI GCTCC 3 cut(s) 11, 25, 76
LpnPI CCDG 5 cut(s) 114, 127, 141, 234, 273
Lsp1109I GCAGC 1 cut(s) 174
LweI GCATC 1 cut(s) 457
MaeI CTAG 1 cut(s) 176
MaeII ACGT 1 cut(s) 306
MalI GATC 3 cut(s) 195, 219, 452
MboI GATC 3 cut(s) 193, 217, 450
MflI RGATCY 1 cut(s) 193
MhlI GDGCHC 1 cut(s) 52
MluCI AATT 3 cut(s) 65, 233, 297
MnlI CCTC 7 cut(s) 16, 50, 84, 120, 174, 289, 322
MseI TTAA 2 cut(s) 369, 476
MslI CAYNNNNRTG 1 cut(s) 129
MspR9I CCNGG 1 cut(s) 129
MvaI CCWGG 1 cut(s) 129
MwoI GCNNNNNNNGC 1 cut(s) 164
NdeII GATC 3 cut(s) 193, 217, 450
NlaIV GGNNCC 1 cut(s) 277
NspV TTCGAA 1 cut(s) 318
PaeR7I CTCGAG 1 cut(s) 280
PcsI WCGNNNNNNNCGW 2 cut(s) 237, 324
PkrI GCNGC 3 cut(s) 157, 160, 189
Psp124BI GAGCTC 1 cut(s) 52
Psp6I CCWGG 1 cut(s) 127
PspGI CCWGG 1 cut(s) 127
PspN4I GGNNCC 1 cut(s) 277
PspPI GGNCC 2 cut(s) 134, 276
PspXI VCTCGAGB 1 cut(s) 280
PsuI RGATCY 1 cut(s) 193
RseI CAYNNNNRTG 1 cut(s) 129
SacI GAGCTC 1 cut(s) 52
SaqAI TTAA 2 cut(s) 369, 476
SatI GCNGC 3 cut(s) 156, 159, 188
Sau3AI GATC 3 cut(s) 193, 217, 450
Sau96I GGNCC 2 cut(s) 134, 276
ScrFI CCNGG 1 cut(s) 129
SduI GDGCHC 1 cut(s) 52
SfaNI GCATC 1 cut(s) 457
Sfr274I CTCGAG 1 cut(s) 280
SfuI TTCGAA 1 cut(s) 318
SinI GGWCC 1 cut(s) 134
SlaI CTCGAG 1 cut(s) 280
SmiMI CAYNNNNRTG 1 cut(s) 129
SmlI CTYRAG 1 cut(s) 280
SmoI CTYRAG 1 cut(s) 280
Sse9I AATT 3 cut(s) 65, 233, 297
SsiI CCGC 2 cut(s) 155, 158
SspMI CTAG 1 cut(s) 176
SstI GAGCTC 1 cut(s) 52
StyD4I CCNGG 1 cut(s) 127
TaaI ACNGT 2 cut(s) 262, 457
TaiI ACGT 1 cut(s) 309
TaqI TCGA 6 cut(s) 231, 269, 281, 318, 327, 459
TasI AATT 3 cut(s) 65, 233, 297
TauI GCSGC 2 cut(s) 158, 161
Tru1I TTAA 2 cut(s) 369, 476
Tru9I TTAA 2 cut(s) 369, 476
TscAI CASTG 2 cut(s) 265, 460
TseI GCWGC 1 cut(s) 187
TspDTI ATGAA 2 cut(s) 303, 477
TspRI CASTG 2 cut(s) 265, 460
VpaK11BI GGWCC 1 cut(s) 134
XapI RAATTY 2 cut(s) 65, 297
XbaI TCTAGA 1 cut(s) 175
XhoI CTCGAG 1 cut(s) 280
XspI CTAG 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.