Prupe.1G139200_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0012182
Physical Location & Seq
Forward (+)
10898295 .. 10899742
1448 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G139200.1

Sequence Viewer

Length: 495 bp
ATGGTGAAAGAAAGAGGCGAAGAGTTGAGCGAAGAAGAAAAGAGAGCTTTAAGAGGCAGCAAATTCGCACCTCTCCCATCGTTGCCTCCGCGTTCCCAACCCCAACCCAGGTTGGCTCATCCTGGGGGTCCATTGACGACGAATAAAGCAGCGGCCTTGGCGAAATTTCTAGAAAGAAAACTGCAGGATCCCAATGGATTGGACAACATCAACCCGCATCTTGTGGAACGAGCTGTCCAGAACGCCAAACGCACCGTTTTCGCCAGTGGGGCATCTAATTCTGGAATAACCATACGACATGTTGACTCCTTCGGTGATTATGATTTTGAGGACTCTCTGCAACAAGAAGAAAATGTGGAAAATTCTGAGCCCAAGAAGCTGAAGAAAAAAATTAAGAAGAAAAAGAAGAGTGAGAAGAAAAAGAGGCAAAAGATAATGGAGGACTCTGGTTGTGCTGTGGTAAAAAAACCTAAAAAGAAGAAGTTAGGATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

165

Amino Acids

18.36

Weight (kDa)

9.94

Isoelectric Point (pI)

53.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012182)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G18540 AT5G18540 AT5G18540 AT5G18540
fragaria_vesca FvH4_4g17670 FvH4_4g17670
malus_domestica MD13G1170800.v1.1
prunus_persica Prupe.1G139200_v2.0.a1
pyrus_communis pycom13g14650
rosa_chinensis RchiOBHm_Chr4g0421611
rosa_laevigata RLG00000007664
rosa_multiflora Rmu_ssc0000097.1_g000003
rosa_roxburghii Rroxscaffold_5G00363860
rosa_rugosa Rorug04G0173800
rosa_samantha Rh4AG233500 Rh4BG236400 Rh4CG248100 Rh4DG232300
rosa_wichuraiana Rw4G020060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 91
AciI CCGC 3 cut(s) 89, 152, 215
AclWI GGATC 2 cut(s) 182, 195
AcsI RAATTY 3 cut(s) 62, 164, 361
AcuI CTGAAG 1 cut(s) 401
AfiI CCNNNNNNNGG 1 cut(s) 108
AflIII ACRYGT 1 cut(s) 298
AjnI CCWGG 2 cut(s) 107, 121
AloI GAACNNNNNNTCC 2 cut(s) 219, 251
AluBI AGCT 3 cut(s) 47, 233, 379
AluI AGCT 3 cut(s) 47, 233, 379
AlwI GGATC 2 cut(s) 182, 195
AoxI GGCC 1 cut(s) 153
ApeKI GCWGC 2 cut(s) 57, 149
ApoI RAATTY 3 cut(s) 62, 164, 361
AspS9I GGNCC 1 cut(s) 128
AsuHPI GGTGA 2 cut(s) 16, 326
AvaII GGWCC 1 cut(s) 128
BamHI GGATCC 1 cut(s) 187
BanII GRGCYC 1 cut(s) 372
BbvI GCAGC 2 cut(s) 69, 161
BccI CCATC 1 cut(s) 85
BcgI CGANNNNNNTGC 4 cut(s) 46, 80, 241, 275
BciT130I CCWGG 2 cut(s) 109, 123
BfaI CTAG 1 cut(s) 170
BfmI CTRYAG 1 cut(s) 182
BglI GCCNNNNNGGC 1 cut(s) 269
BisI GCNGC 3 cut(s) 58, 150, 153
BlsI GCNGC 3 cut(s) 59, 151, 154
Bme1390I CCNGG 2 cut(s) 109, 123
Bme18I GGWCC 1 cut(s) 128
BmgT120I GGNCC 1 cut(s) 128
BmiI GGNNCC 2 cut(s) 129, 189
BmrFI CCNGG 2 cut(s) 109, 123
BmsI GCATC 2 cut(s) 226, 281
BsaJI CCNNGG 3 cut(s) 107, 122, 156
Bsc4I CCNNNNNNNGG 1 cut(s) 108
Bse1I ACTGG 1 cut(s) 264
BseBI CCWGG 2 cut(s) 109, 123
BseDI CCNNGG 3 cut(s) 107, 122, 156
BseGI GGATG 1 cut(s) 118
BseLI CCNNNNNNNGG 1 cut(s) 108
BseMII CTCAG 1 cut(s) 357
BseNI ACTGG 1 cut(s) 264
BseXI GCAGC 2 cut(s) 69, 161
Bsh1236I CGCG 1 cut(s) 91
BshFI GGCC 1 cut(s) 155
BslI CCNNNNNNNGG 1 cut(s) 108
BsnI GGCC 1 cut(s) 155
Bsp1286I GDGCHC 1 cut(s) 372
Bsp143I GATC 1 cut(s) 187
BspACI CCGC 3 cut(s) 89, 152, 215
BspANI GGCC 1 cut(s) 155
BspCNI CTCAG 1 cut(s) 358
BspFNI CGCG 1 cut(s) 91
BspLI GGNNCC 2 cut(s) 129, 189
BspMAI CTGCAG 1 cut(s) 186
BspPI GGATC 2 cut(s) 182, 195
BsrI ACTGG 1 cut(s) 264
BssECI CCNNGG 3 cut(s) 107, 122, 156
BssMI GATC 1 cut(s) 187
BssT1I CCWWGG 1 cut(s) 156
Bst2UI CCWGG 2 cut(s) 109, 123
Bst4CI ACNGT 1 cut(s) 256
Bst6I CTCTTC 2 cut(s) 15, 401
BstDEI CTNAG 1 cut(s) 366
BstF5I GGATG 1 cut(s) 118
BstFNI CGCG 1 cut(s) 91
BstKTI GATC 1 cut(s) 190
BstMBI GATC 1 cut(s) 187
BstMWI GCNNNNNNNGC 3 cut(s) 158, 269, 376
BstNI CCWGG 2 cut(s) 109, 123
BstNSI RCATGY 1 cut(s) 302
BstSCI CCNGG 2 cut(s) 107, 121
BstSFI CTRYAG 1 cut(s) 182
BstUI CGCG 1 cut(s) 91
BstV1I GCAGC 2 cut(s) 69, 161
BstX2I RGATCY 1 cut(s) 187
BstXI CCANNNNNNTGG 1 cut(s) 199
BstYI RGATCY 1 cut(s) 187
BsuRI GGCC 1 cut(s) 155
BtsCI GGATG 1 cut(s) 118
BtsIMutI CAGTG 1 cut(s) 271
Cfr13I GGNCC 1 cut(s) 128
CviAII CATG 1 cut(s) 299
CviJI RGCY 6 cut(s) 47, 116, 155, 233, 370, 379
CviKI_1 RGCY 6 cut(s) 47, 116, 155, 233, 370, 379
DdeI CTNAG 1 cut(s) 366
DpnI GATC 1 cut(s) 189
DpnII GATC 1 cut(s) 187
Eam1104I CTCTTC 2 cut(s) 15, 401
EarI CTCTTC 2 cut(s) 15, 401
Eco130I CCWWGG 1 cut(s) 156
Eco24I GRGCYC 1 cut(s) 372
Eco47I GGWCC 1 cut(s) 128
Eco57I CTGAAG 1 cut(s) 401
EcoRII CCWGG 2 cut(s) 107, 121
EcoT14I CCWWGG 1 cut(s) 156
EcoT38I GRGCYC 1 cut(s) 372
ErhI CCWWGG 1 cut(s) 156
FaeI CATG 1 cut(s) 302
FaiI YATR 3 cut(s) 293, 300, 321
FatI CATG 1 cut(s) 298
FauI CCCGC 1 cut(s) 222
Fnu4HI GCNGC 3 cut(s) 58, 150, 153
FokI GGATG 1 cut(s) 105
FriOI GRGCYC 1 cut(s) 372
Fsp4HI GCNGC 3 cut(s) 58, 150, 153
FspBI CTAG 1 cut(s) 170
GluI GCNGC 3 cut(s) 58, 150, 153
HaeIII GGCC 1 cut(s) 155
Hin1II CATG 1 cut(s) 302
HincII GTYRAC 1 cut(s) 304
HindII GTYRAC 1 cut(s) 304
HinfI GANTC 3 cut(s) 305, 332, 443
HphI GGTGA 2 cut(s) 16, 326
Hpy166II GTNNAC 1 cut(s) 304
Hpy188I TCNGA 1 cut(s) 367
Hpy188III TCNNGA 3 cut(s) 170, 238, 282
Hpy8I GTNNAC 1 cut(s) 304
Hpy99I CGWCG 1 cut(s) 142
HpyAV CCTTC 1 cut(s) 319
HpyCH4III ACNGT 1 cut(s) 256
HpyCH4V TGCA 2 cut(s) 184, 340
HpyF10VI GCNNNNNNNGC 3 cut(s) 158, 269, 376
HpyF3I CTNAG 1 cut(s) 366
Hsp92II CATG 1 cut(s) 302
Kzo9I GATC 1 cut(s) 187
LpnPI CCDG 9 cut(s) 94, 108, 121, 135, 170, 251, 267, 277, 432
Lsp1109I GCAGC 2 cut(s) 69, 161
LweI GCATC 2 cut(s) 226, 281
MaeI CTAG 1 cut(s) 170
MalI GATC 1 cut(s) 189
MboI GATC 1 cut(s) 187
MboII GAAGA 9 cut(s) 32, 44, 47, 359, 394, 409, 418, 427, 490
MflI RGATCY 1 cut(s) 187
MhlI GDGCHC 1 cut(s) 372
MluCI AATT 5 cut(s) 62, 164, 277, 361, 390
MlyI GAGTC 3 cut(s) 299, 326, 437
MnlI CCTC 7 cut(s) 8, 47, 81, 96, 322, 417, 433
MseI TTAA 2 cut(s) 50, 393
MspA1I CMGCKG 1 cut(s) 152
MspR9I CCNGG 2 cut(s) 109, 123
MvaI CCWGG 2 cut(s) 109, 123
MvnI CGCG 1 cut(s) 91
MwoI GCNNNNNNNGC 3 cut(s) 158, 269, 376
NdeII GATC 1 cut(s) 187
NlaIII CATG 1 cut(s) 302
NlaIV GGNNCC 2 cut(s) 129, 189
NspI RCATGY 1 cut(s) 302
PciI ACATGT 1 cut(s) 298
PkrI GCNGC 3 cut(s) 59, 151, 154
PleI GAGTC 3 cut(s) 299, 326, 437
PpsI GAGTC 3 cut(s) 299, 326, 437
PscI ACATGT 1 cut(s) 298
Psp6I CCWGG 2 cut(s) 107, 121
PspGI CCWGG 2 cut(s) 107, 121
PspN4I GGNNCC 2 cut(s) 129, 189
PspPI GGNCC 1 cut(s) 128
PstI CTGCAG 1 cut(s) 186
PsuI RGATCY 1 cut(s) 187
SaqAI TTAA 2 cut(s) 50, 393
SatI GCNGC 3 cut(s) 58, 150, 153
Sau3AI GATC 1 cut(s) 187
Sau96I GGNCC 1 cut(s) 128
SchI GAGTC 3 cut(s) 299, 326, 437
ScrFI CCNGG 2 cut(s) 109, 123
SduI GDGCHC 1 cut(s) 372
SetI ASST 6 cut(s) 49, 73, 113, 235, 381, 472
SfaNI GCATC 2 cut(s) 226, 281
SfcI CTRYAG 1 cut(s) 182
SinI GGWCC 1 cut(s) 128
Sse9I AATT 5 cut(s) 62, 164, 277, 361, 390
SsiI CCGC 3 cut(s) 89, 152, 215
SspMI CTAG 1 cut(s) 170
StyD4I CCNGG 2 cut(s) 107, 121
StyI CCWWGG 1 cut(s) 156
TaaI ACNGT 1 cut(s) 256
TasI AATT 5 cut(s) 62, 164, 277, 361, 390
TauI GCSGC 1 cut(s) 155
Tru1I TTAA 2 cut(s) 50, 393
Tru9I TTAA 2 cut(s) 50, 393
TscAI CASTG 1 cut(s) 271
TseI GCWGC 2 cut(s) 57, 149
TspRI CASTG 1 cut(s) 271
VpaK11BI GGWCC 1 cut(s) 128
XapI RAATTY 3 cut(s) 62, 164, 361
XbaI TCTAGA 1 cut(s) 169
XceI RCATGY 1 cut(s) 302
XspI CTAG 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.