MD13G1170800.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0012182
Physical Location & Seq
Forward (+)
13906230 .. 13908215
1986 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1170800.v1.1.491

Sequence Viewer

Length: 498 bp
ATGGTGAAACAAAGAGGAGAAGAGTTGACCGAAGACGAAAAGAAGGCCTTAAGAGGCAGCAAATTCGCGCCTCTCCCATCCTTGCCCCCTCCTCGTTGCCAACCCAGGTTGGCTCATCCTGGAGGTCCGTTGACAACGAACAAAGCGGCGGCGTTGGCGAAATTTCTCGAGAGAAAGCTACAGAATCCCGATGGATTGGAATCCATCAACCCGCATCTTCTCGAACGCGCTGTTCAGAACGCTAAACGCACCGTTTTTGCAAGTGGCGCATCGAATTCTGGAATCCGAATACGGCATGTTGACTCCTTTGATGACTCTGAGACTGAGGACCCTCAACAGGAAGAAAATGTGGAGATTTCAGAGCTCAAGAAGCTGAAGAAGAATAAGAAGAAGAAGAAGATGATGAAAAGTGAGAAGAAAAAGAGACAACAAAAGGTTATGGAAGACTCGGGGGGCGGTGTGGTAAAAAGGCCTAAAAAGAAGAAAGTAAAGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

166

Amino Acids

18.54

Weight (kDa)

10.06

Isoelectric Point (pI)

52.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012182)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G18540 AT5G18540 AT5G18540 AT5G18540
fragaria_vesca FvH4_4g17670 FvH4_4g17670
malus_domestica MD13G1170800.v1.1
prunus_persica Prupe.1G139200_v2.0.a1
pyrus_communis pycom13g14650
rosa_chinensis RchiOBHm_Chr4g0421611
rosa_laevigata RLG00000007664
rosa_multiflora Rmu_ssc0000097.1_g000003
rosa_roxburghii Rroxscaffold_5G00363860
rosa_rugosa Rorug04G0173800
rosa_samantha Rh4AG233500 Rh4BG236400 Rh4CG248100 Rh4DG232300
rosa_wichuraiana Rw4G020060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 68, 228
AciI CCGC 4 cut(s) 146, 149, 212, 456
AcsI RAATTY 3 cut(s) 62, 161, 274
AcuI CTGAAG 1 cut(s) 395
AfiI CCNNNNNNNGG 1 cut(s) 337
AflII CTTAAG 1 cut(s) 49
AjnI CCWGG 2 cut(s) 104, 118
AluBI AGCT 3 cut(s) 178, 364, 373
AluI AGCT 3 cut(s) 178, 364, 373
Alw21I GWGCWC 1 cut(s) 366
Alw26I GTCTC 2 cut(s) 314, 418
Ama87I CYCGRG 2 cut(s) 167, 448
AoxI GGCC 2 cut(s) 45, 470
ApeKI GCWGC 1 cut(s) 57
ApoI RAATTY 3 cut(s) 62, 161, 274
AspLEI GCGC 3 cut(s) 70, 230, 269
AspS9I GGNCC 2 cut(s) 125, 328
AsuHPI GGTGA 1 cut(s) 16
AvaI CYCGRG 2 cut(s) 167, 448
AvaII GGWCC 2 cut(s) 125, 328
BanII GRGCYC 1 cut(s) 366
BbsI GAAGAC 2 cut(s) 39, 450
Bbv12I GWGCWC 1 cut(s) 366
BbvI GCAGC 1 cut(s) 69
BccI CCATC 3 cut(s) 85, 185, 212
BceAI ACGGC 1 cut(s) 308
BcgI CGANNNNNNTGC 2 cut(s) 46, 80
BciT130I CCWGG 2 cut(s) 106, 120
BcoDI GTCTC 2 cut(s) 314, 418
BfmI CTRYAG 1 cut(s) 179
BfrI CTTAAG 1 cut(s) 49
BisI GCNGC 3 cut(s) 58, 147, 150
BlsI GCNGC 3 cut(s) 59, 148, 151
Bme1390I CCNGG 2 cut(s) 106, 120
Bme18I GGWCC 2 cut(s) 125, 328
BmeT110I CYCGRG 2 cut(s) 167, 448
BmgT120I GGNCC 2 cut(s) 125, 328
BmiI GGNNCC 1 cut(s) 330
BmrFI CCNGG 2 cut(s) 106, 120
BmsI GCATC 2 cut(s) 223, 278
BpiI GAAGAC 2 cut(s) 39, 450
BpmI CTGGAG 1 cut(s) 141
BpuEI CTTGAG 1 cut(s) 350
BsaBI GATNNNNATC 1 cut(s) 199
BsaJI CCNNGG 1 cut(s) 104
Bsc4I CCNNNNNNNGG 1 cut(s) 337
Bse8I GATNNNNATC 1 cut(s) 199
BseBI CCWGG 2 cut(s) 106, 120
BseDI CCNNGG 1 cut(s) 104
BseGI GGATG 2 cut(s) 77, 115
BseJI GATNNNNATC 1 cut(s) 199
BseLI CCNNNNNNNGG 1 cut(s) 337
BseMII CTCAG 2 cut(s) 309, 315
BseRI GAGGAG 2 cut(s) 30, 81
BseXI GCAGC 1 cut(s) 69
Bsh1236I CGCG 2 cut(s) 68, 228
BshFI GGCC 2 cut(s) 47, 472
BsiHKAI GWGCWC 1 cut(s) 366
BsiHKCI CYCGRG 2 cut(s) 167, 448
BslI CCNNNNNNNGG 1 cut(s) 337
BsmAI GTCTC 2 cut(s) 314, 418
BsnI GGCC 2 cut(s) 47, 472
BsoBI CYCGRG 2 cut(s) 167, 448
Bsp1286I GDGCHC 1 cut(s) 366
BspACI CCGC 4 cut(s) 146, 149, 212, 456
BspANI GGCC 2 cut(s) 47, 472
BspCNI CTCAG 2 cut(s) 310, 316
BspFNI CGCG 2 cut(s) 68, 228
BspLI GGNNCC 1 cut(s) 330
BspTI CTTAAG 1 cut(s) 49
BssECI CCNNGG 1 cut(s) 104
Bst2UI CCWGG 2 cut(s) 106, 120
Bst4CI ACNGT 1 cut(s) 253
Bst6I CTCTTC 1 cut(s) 15
BstAFI CTTAAG 1 cut(s) 49
BstDEI CTNAG 2 cut(s) 318, 324
BstF5I GGATG 2 cut(s) 77, 115
BstFNI CGCG 2 cut(s) 68, 228
BstHHI GCGC 3 cut(s) 70, 230, 269
BstMAI GTCTC 2 cut(s) 314, 418
BstMWI GCNNNNNNNGC 3 cut(s) 155, 266, 370
BstNI CCWGG 2 cut(s) 106, 120
BstNSI RCATGY 1 cut(s) 299
BstSCI CCNGG 2 cut(s) 104, 118
BstSFI CTRYAG 1 cut(s) 179
BstUI CGCG 2 cut(s) 68, 228
BstV1I GCAGC 1 cut(s) 69
BstV2I GAAGAC 2 cut(s) 39, 450
BsuRI GGCC 2 cut(s) 47, 472
BtsCI GGATG 2 cut(s) 77, 115
CfoI GCGC 3 cut(s) 70, 230, 269
Cfr13I GGNCC 2 cut(s) 125, 328
CviAII CATG 1 cut(s) 296
CviJI RGCY 6 cut(s) 47, 113, 178, 364, 373, 472
CviKI_1 RGCY 6 cut(s) 47, 113, 178, 364, 373, 472
DdeI CTNAG 2 cut(s) 318, 324
Eam1104I CTCTTC 1 cut(s) 15
EarI CTCTTC 1 cut(s) 15
Ecl136II GAGCTC 1 cut(s) 364
Eco147I AGGCCT 2 cut(s) 47, 472
Eco24I GRGCYC 1 cut(s) 366
Eco47I GGWCC 2 cut(s) 125, 328
Eco53kI GAGCTC 1 cut(s) 364
Eco57I CTGAAG 1 cut(s) 395
Eco88I CYCGRG 2 cut(s) 167, 448
EcoICRI GAGCTC 1 cut(s) 364
EcoO109I RGGNCCY 1 cut(s) 328
EcoRI GAATTC 1 cut(s) 274
EcoRII CCWGG 2 cut(s) 104, 118
EcoT38I GRGCYC 1 cut(s) 366
FaeI CATG 1 cut(s) 299
FaiI YATR 2 cut(s) 297, 440
FalI AAGNNNNNCTT 2 cut(s) 32, 64
FatI CATG 1 cut(s) 295
FauI CCCGC 1 cut(s) 219
Fnu4HI GCNGC 3 cut(s) 58, 147, 150
FokI GGATG 2 cut(s) 64, 102
FriOI GRGCYC 1 cut(s) 366
Fsp4HI GCNGC 3 cut(s) 58, 147, 150
GlaI GCGC 3 cut(s) 69, 229, 268
GluI GCNGC 3 cut(s) 58, 147, 150
GsuI CTGGAG 1 cut(s) 141
HaeIII GGCC 2 cut(s) 47, 472
HhaI GCGC 3 cut(s) 70, 230, 269
Hin1II CATG 1 cut(s) 299
Hin6I GCGC 3 cut(s) 68, 228, 267
HinP1I GCGC 3 cut(s) 68, 228, 267
HincII GTYRAC 3 cut(s) 27, 132, 301
HindII GTYRAC 3 cut(s) 27, 132, 301
HinfI GANTC 6 cut(s) 184, 200, 282, 302, 314, 446
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 3 cut(s) 27, 132, 301
Hpy188I TCNGA 4 cut(s) 237, 287, 319, 361
Hpy188III TCNNGA 6 cut(s) 167, 169, 188, 221, 279, 367
Hpy8I GTNNAC 3 cut(s) 27, 132, 301
HpyAV CCTTC 1 cut(s) 37
HpyCH4III ACNGT 1 cut(s) 253
HpyCH4V TGCA 1 cut(s) 260
HpyF10VI GCNNNNNNNGC 3 cut(s) 155, 266, 370
HpyF3I CTNAG 2 cut(s) 318, 324
Hsp92II CATG 1 cut(s) 299
HspAI GCGC 3 cut(s) 68, 228, 267
LpnPI CCDG 6 cut(s) 91, 105, 118, 132, 264, 323
Lsp1109I GCAGC 1 cut(s) 69
LweI GCATC 2 cut(s) 223, 278
MhlI GDGCHC 1 cut(s) 366
MluCI AATT 3 cut(s) 62, 161, 274
MlyI GAGTC 3 cut(s) 296, 308, 440
MnlI CCTC 8 cut(s) 8, 47, 81, 99, 102, 116, 319, 342
MseI TTAA 1 cut(s) 50
MspCI CTTAAG 1 cut(s) 49
MspR9I CCNGG 2 cut(s) 106, 120
MvaI CCWGG 2 cut(s) 106, 120
MvnI CGCG 2 cut(s) 68, 228
MwoI GCNNNNNNNGC 3 cut(s) 155, 266, 370
NlaIII CATG 1 cut(s) 299
NlaIV GGNNCC 1 cut(s) 330
NspI RCATGY 1 cut(s) 299
PaeR7I CTCGAG 1 cut(s) 167
PceI AGGCCT 2 cut(s) 47, 472
PfeI GAWTC 3 cut(s) 184, 200, 282
PfoI TCCNGGA 1 cut(s) 118
PkrI GCNGC 3 cut(s) 59, 148, 151
PleI GAGTC 3 cut(s) 296, 308, 440
PpsI GAGTC 3 cut(s) 296, 308, 440
PpuMI RGGWCCY 1 cut(s) 328
Psp124BI GAGCTC 1 cut(s) 366
Psp5II RGGWCCY 1 cut(s) 328
Psp6I CCWGG 2 cut(s) 104, 118
PspGI CCWGG 2 cut(s) 104, 118
PspN4I GGNNCC 1 cut(s) 330
PspPI GGNCC 2 cut(s) 125, 328
PspPPI RGGWCCY 1 cut(s) 328
SacI GAGCTC 1 cut(s) 366
SaqAI TTAA 1 cut(s) 50
SatI GCNGC 3 cut(s) 58, 147, 150
Sau96I GGNCC 2 cut(s) 125, 328
SchI GAGTC 3 cut(s) 296, 308, 440
ScrFI CCNGG 2 cut(s) 106, 120
SduI GDGCHC 1 cut(s) 366
SetI ASST 6 cut(s) 110, 127, 180, 366, 375, 438
SfaNI GCATC 2 cut(s) 223, 278
SfcI CTRYAG 1 cut(s) 179
Sfr274I CTCGAG 1 cut(s) 167
SinI GGWCC 2 cut(s) 125, 328
SlaI CTCGAG 1 cut(s) 167
SmlI CTYRAG 3 cut(s) 49, 167, 365
SmoI CTYRAG 3 cut(s) 49, 167, 365
Sse9I AATT 3 cut(s) 62, 161, 274
SseBI AGGCCT 2 cut(s) 47, 472
SsiI CCGC 4 cut(s) 146, 149, 212, 456
SstI GAGCTC 1 cut(s) 366
StuI AGGCCT 2 cut(s) 47, 472
StyD4I CCNGG 2 cut(s) 104, 118
TaaI ACNGT 1 cut(s) 253
TaqI TCGA 3 cut(s) 168, 222, 272
TaqII GACCGA 1 cut(s) 44
TasI AATT 3 cut(s) 62, 161, 274
TauI GCSGC 2 cut(s) 149, 152
TfiI GAWTC 3 cut(s) 184, 200, 282
Tru1I TTAA 1 cut(s) 50
Tru9I TTAA 1 cut(s) 50
TseI GCWGC 1 cut(s) 57
TspDTI ATGAA 1 cut(s) 419
TspGWI ACGGA 1 cut(s) 117
Vha464I CTTAAG 1 cut(s) 49
VpaK11BI GGWCC 2 cut(s) 125, 328
XapI RAATTY 3 cut(s) 62, 161, 274
XceI RCATGY 1 cut(s) 299
XhoI CTCGAG 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.