FvH4_4g17670

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0012182
Physical Location & Seq
Reverse (-)
21574101 .. 21575572
1472 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g17670.t1

Sequence Viewer

Length: 480 bp
ATGGCGAAGAACAGAGCAGAAGAGTTAACCGAAGACGAGAAGAAGGCCTTACGAGGCAGCAAATTCGCTCCTCTCCCATCTCTACCTCCTCCTCGATCCCAACCCAGGTTGGCTCATCCAGGGGGTCCGTTGACGACGAATAAGGCGGCGGCGTTGGCGAAATTTCTAGAAAGAAAGCTGCAGGATCCGGATGGATTGGGCTCCATGAATCCACAGCTAGTTGAGCGCGCTGTTCTGGACGCTAAACGCACCGTTTTTGCAAGTGCAGCCTCTAATTCTCAAGGAAGAATACGACATGTCAACTCCTTTGGTGACTCTGAGTCTGAGGACCCTCTTCAGGAGGAAGTAGAAAATGTGGGAATCTCTGAGCCTAAGAAGAAGAAAAAGAATAAGAAGAAGAAGAAGAACAAGCAAAAGATAGTGGAGGACAATGGGGGTGCTGTGGTCAAAAAGCCGAAAAAGAAGAAGATAAAATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

160

Amino Acids

17.48

Weight (kDa)

10.09

Isoelectric Point (pI)

50.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012182)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G18540 AT5G18540 AT5G18540 AT5G18540
fragaria_vesca FvH4_4g17670 FvH4_4g17670
malus_domestica MD13G1170800.v1.1
prunus_persica Prupe.1G139200_v2.0.a1
pyrus_communis pycom13g14650
rosa_chinensis RchiOBHm_Chr4g0421611
rosa_laevigata RLG00000007664
rosa_multiflora Rmu_ssc0000097.1_g000003
rosa_roxburghii Rroxscaffold_5G00363860
rosa_rugosa Rorug04G0173800
rosa_samantha Rh4AG233500 Rh4BG236400 Rh4CG248100 Rh4DG232300
rosa_wichuraiana Rw4G020060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 228
AccIII TCCGGA 1 cut(s) 187
AciI CCGC 2 cut(s) 146, 149
AclWI GGATC 3 cut(s) 90, 179, 192
AcsI RAATTY 2 cut(s) 62, 161
AcuI CTGAAG 1 cut(s) 320
AfiI CCNNNNNNNGG 2 cut(s) 105, 337
AflIII ACRYGT 1 cut(s) 295
AhdI GACNNNNNGTC 1 cut(s) 319
AjnI CCWGG 2 cut(s) 104, 118
AluBI AGCT 2 cut(s) 178, 217
AluI AGCT 2 cut(s) 178, 217
AlwI GGATC 3 cut(s) 90, 179, 192
Aor13HI TCCGGA 1 cut(s) 187
AoxI GGCC 1 cut(s) 45
ApeKI GCWGC 3 cut(s) 57, 178, 266
ApoI RAATTY 2 cut(s) 62, 161
AspLEI GCGC 2 cut(s) 228, 230
AspS9I GGNCC 2 cut(s) 125, 328
AsuHPI GGTGA 1 cut(s) 323
AvaII GGWCC 2 cut(s) 125, 328
BamHI GGATCC 1 cut(s) 184
BanII GRGCYC 1 cut(s) 203
BbsI GAAGAC 1 cut(s) 39
BbvI GCAGC 3 cut(s) 69, 165, 278
BccI CCATC 2 cut(s) 85, 185
BcgI CGANNNNNNTGC 2 cut(s) 46, 80
BciT130I CCWGG 2 cut(s) 106, 120
BfaI CTAG 2 cut(s) 167, 218
BfmI CTRYAG 1 cut(s) 179
BisI GCNGC 5 cut(s) 58, 147, 150, 179, 267
BlsI GCNGC 5 cut(s) 59, 148, 151, 180, 268
Bme1390I CCNGG 2 cut(s) 106, 120
Bme18I GGWCC 2 cut(s) 125, 328
BmeRI GACNNNNNGTC 1 cut(s) 319
BmgT120I GGNCC 2 cut(s) 125, 328
BmiI GGNNCC 4 cut(s) 126, 186, 202, 330
BmrFI CCNGG 2 cut(s) 106, 120
BpiI GAAGAC 1 cut(s) 39
BpuEI CTTGAG 1 cut(s) 264
BsaJI CCNNGG 2 cut(s) 104, 119
BsaWI WCCGGW 1 cut(s) 187
Bsc4I CCNNNNNNNGG 2 cut(s) 105, 337
BseAI TCCGGA 1 cut(s) 187
BseBI CCWGG 2 cut(s) 106, 120
BseDI CCNNGG 2 cut(s) 104, 119
BseGI GGATG 2 cut(s) 115, 196
BseLI CCNNNNNNNGG 2 cut(s) 105, 337
BseMII CTCAG 3 cut(s) 309, 315, 357
BsePI GCGCGC 1 cut(s) 226
BseRI GAGGAG 3 cut(s) 60, 78, 81
BseXI GCAGC 3 cut(s) 69, 165, 278
BsgI GTGCAG 1 cut(s) 285
Bsh1236I CGCG 1 cut(s) 228
BshFI GGCC 1 cut(s) 47
BsiSI CCGG 1 cut(s) 188
BslI CCNNNNNNNGG 2 cut(s) 105, 337
BsnI GGCC 1 cut(s) 47
Bsp1286I GDGCHC 1 cut(s) 203
Bsp13I TCCGGA 1 cut(s) 187
Bsp143I GATC 2 cut(s) 95, 184
BspACI CCGC 2 cut(s) 146, 149
BspANI GGCC 1 cut(s) 47
BspCNI CTCAG 3 cut(s) 310, 316, 358
BspEI TCCGGA 1 cut(s) 187
BspFNI CGCG 1 cut(s) 228
BspLI GGNNCC 4 cut(s) 126, 186, 202, 330
BspMAI CTGCAG 1 cut(s) 183
BspPI GGATC 3 cut(s) 90, 179, 192
BssECI CCNNGG 2 cut(s) 104, 119
BssHII GCGCGC 1 cut(s) 226
BssMI GATC 2 cut(s) 95, 184
Bst2UI CCWGG 2 cut(s) 106, 120
Bst4CI ACNGT 1 cut(s) 253
Bst6I CTCTTC 2 cut(s) 15, 339
BstC8I GCNNGC 1 cut(s) 228
BstDEI CTNAG 4 cut(s) 318, 324, 366, 372
BstF5I GGATG 2 cut(s) 115, 196
BstFNI CGCG 1 cut(s) 228
BstHHI GCGC 2 cut(s) 228, 230
BstKTI GATC 2 cut(s) 98, 187
BstMBI GATC 2 cut(s) 95, 184
BstMWI GCNNNNNNNGC 3 cut(s) 155, 223, 266
BstNI CCWGG 2 cut(s) 106, 120
BstNSI RCATGY 1 cut(s) 299
BstSCI CCNGG 2 cut(s) 104, 118
BstSFI CTRYAG 1 cut(s) 179
BstUI CGCG 1 cut(s) 228
BstV1I GCAGC 3 cut(s) 69, 165, 278
BstV2I GAAGAC 1 cut(s) 39
BstX2I RGATCY 1 cut(s) 184
BstYI RGATCY 1 cut(s) 184
BsuRI GGCC 1 cut(s) 47
BtsCI GGATG 2 cut(s) 115, 196
Cac8I GCNNGC 1 cut(s) 228
CfoI GCGC 2 cut(s) 228, 230
Cfr13I GGNCC 2 cut(s) 125, 328
CseI GACGC 1 cut(s) 248
CviAII CATG 2 cut(s) 205, 296
CviJI RGCY 8 cut(s) 47, 113, 178, 201, 217, 269, 370, 454
CviKI_1 RGCY 8 cut(s) 47, 113, 178, 201, 217, 269, 370, 454
DdeI CTNAG 4 cut(s) 318, 324, 366, 372
DpnI GATC 2 cut(s) 97, 186
DpnII GATC 2 cut(s) 95, 184
DriI GACNNNNNGTC 1 cut(s) 319
Eam1104I CTCTTC 2 cut(s) 15, 339
Eam1105I GACNNNNNGTC 1 cut(s) 319
EarI CTCTTC 2 cut(s) 15, 339
Eco147I AGGCCT 1 cut(s) 47
Eco24I GRGCYC 1 cut(s) 203
Eco47I GGWCC 2 cut(s) 125, 328
Eco57I CTGAAG 1 cut(s) 320
EcoO109I RGGNCCY 1 cut(s) 328
EcoRII CCWGG 2 cut(s) 104, 118
EcoT38I GRGCYC 1 cut(s) 203
FaeI CATG 2 cut(s) 208, 299
FaiI YATR 2 cut(s) 206, 297
FalI AAGNNNNNCTT 2 cut(s) 32, 64
FatI CATG 2 cut(s) 204, 295
Fnu4HI GCNGC 5 cut(s) 58, 147, 150, 179, 267
FokI GGATG 2 cut(s) 102, 203
FriOI GRGCYC 1 cut(s) 203
Fsp4HI GCNGC 5 cut(s) 58, 147, 150, 179, 267
FspBI CTAG 2 cut(s) 167, 218
GlaI GCGC 2 cut(s) 227, 229
GluI GCNGC 5 cut(s) 58, 147, 150, 179, 267
HaeIII GGCC 1 cut(s) 47
HapII CCGG 1 cut(s) 188
HgaI GACGC 1 cut(s) 248
HhaI GCGC 2 cut(s) 228, 230
Hin1II CATG 2 cut(s) 208, 299
Hin6I GCGC 2 cut(s) 226, 228
HinP1I GCGC 2 cut(s) 226, 228
HincII GTYRAC 3 cut(s) 27, 132, 301
HindII GTYRAC 3 cut(s) 27, 132, 301
HinfI GANTC 4 cut(s) 208, 314, 320, 360
HpaI GTTAAC 1 cut(s) 27
HpaII CCGG 1 cut(s) 188
HphI GGTGA 1 cut(s) 323
Hpy166II GTNNAC 3 cut(s) 27, 132, 301
Hpy188I TCNGA 3 cut(s) 319, 325, 367
Hpy188III TCNNGA 4 cut(s) 167, 188, 236, 338
Hpy8I GTNNAC 3 cut(s) 27, 132, 301
Hpy99I CGWCG 1 cut(s) 139
HpyAV CCTTC 1 cut(s) 37
HpyCH4III ACNGT 1 cut(s) 253
HpyCH4V TGCA 3 cut(s) 181, 260, 266
HpyF10VI GCNNNNNNNGC 3 cut(s) 155, 223, 266
HpyF3I CTNAG 4 cut(s) 318, 324, 366, 372
Hsp92II CATG 2 cut(s) 208, 299
HspAI GCGC 2 cut(s) 226, 228
Kpn2I TCCGGA 1 cut(s) 187
KspAI GTTAAC 1 cut(s) 27
Kzo9I GATC 2 cut(s) 95, 184
LmnI GCTCC 2 cut(s) 73, 206
LpnPI CCDG 8 cut(s) 91, 105, 118, 132, 167, 201, 221, 323
Lsp1109I GCAGC 3 cut(s) 69, 165, 278
MaeI CTAG 2 cut(s) 167, 218
MaeIII GTNAC 1 cut(s) 311
MalI GATC 2 cut(s) 97, 186
MboI GATC 2 cut(s) 95, 184
MflI RGATCY 1 cut(s) 184
MhlI GDGCHC 1 cut(s) 203
MluCI AATT 4 cut(s) 62, 161, 274, 473
MlyI GAGTC 2 cut(s) 308, 329
MroI TCCGGA 1 cut(s) 187
MseI TTAA 1 cut(s) 26
MspI CCGG 1 cut(s) 188
MspR9I CCNGG 2 cut(s) 106, 120
MvaI CCWGG 2 cut(s) 106, 120
MvnI CGCG 1 cut(s) 228
MwoI GCNNNNNNNGC 3 cut(s) 155, 223, 266
NdeII GATC 2 cut(s) 95, 184
NlaIII CATG 2 cut(s) 208, 299
NlaIV GGNNCC 4 cut(s) 126, 186, 202, 330
NmuCI GTSAC 1 cut(s) 311
NspI RCATGY 1 cut(s) 299
PauI GCGCGC 1 cut(s) 226
PceI AGGCCT 1 cut(s) 47
PciI ACATGT 1 cut(s) 295
PfeI GAWTC 2 cut(s) 208, 360
PkrI GCNGC 5 cut(s) 59, 148, 151, 180, 268
PleI GAGTC 2 cut(s) 308, 328
PpsI GAGTC 2 cut(s) 308, 328
PpuMI RGGWCCY 1 cut(s) 328
PscI ACATGT 1 cut(s) 295
Psp5II RGGWCCY 1 cut(s) 328
Psp6I CCWGG 2 cut(s) 104, 118
PspGI CCWGG 2 cut(s) 104, 118
PspN4I GGNNCC 4 cut(s) 126, 186, 202, 330
PspPI GGNCC 2 cut(s) 125, 328
PspPPI RGGWCCY 1 cut(s) 328
PstI CTGCAG 1 cut(s) 183
PsuI RGATCY 1 cut(s) 184
PteI GCGCGC 1 cut(s) 226
SaqAI TTAA 1 cut(s) 26
SatI GCNGC 5 cut(s) 58, 147, 150, 179, 267
Sau3AI GATC 2 cut(s) 95, 184
Sau96I GGNCC 2 cut(s) 125, 328
SchI GAGTC 2 cut(s) 308, 329
ScrFI CCNGG 2 cut(s) 106, 120
SduI GDGCHC 1 cut(s) 203
SetI ASST 4 cut(s) 88, 110, 180, 219
SfcI CTRYAG 1 cut(s) 179
SinI GGWCC 2 cut(s) 125, 328
SmlI CTYRAG 1 cut(s) 279
SmoI CTYRAG 1 cut(s) 279
Sse9I AATT 4 cut(s) 62, 161, 274, 473
SseBI AGGCCT 1 cut(s) 47
SsiI CCGC 2 cut(s) 146, 149
SspMI CTAG 2 cut(s) 167, 218
StuI AGGCCT 1 cut(s) 47
StyD4I CCNGG 2 cut(s) 104, 118
TaaI ACNGT 1 cut(s) 253
TaqI TCGA 1 cut(s) 94
TasI AATT 4 cut(s) 62, 161, 274, 473
TauI GCSGC 2 cut(s) 149, 152
TfiI GAWTC 2 cut(s) 208, 360
Tru1I TTAA 1 cut(s) 26
Tru9I TTAA 1 cut(s) 26
TseFI GTSAC 1 cut(s) 311
TseI GCWGC 3 cut(s) 57, 178, 266
Tsp45I GTSAC 1 cut(s) 311
TspDTI ATGAA 1 cut(s) 221
TspGWI ACGGA 1 cut(s) 117
VpaK11BI GGWCC 2 cut(s) 125, 328
XapI RAATTY 2 cut(s) 62, 161
XbaI TCTAGA 1 cut(s) 166
XceI RCATGY 1 cut(s) 299
XspI CTAG 2 cut(s) 167, 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.