Rorug04G0173800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0012182
Physical Location & Seq
Reverse (-)
30580381 .. 30581167
787 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0173800.1

Sequence Viewer

Length: 534 bp
ATGTGTGAAAAGAAGAATCTTCCAATGCTTCCTATAAAACCTAAATCTCCTGTCATTTCAAGAAGCTCACTGAAGGCTGGAATTTCTTCTTTGGCTCCCTTAGCTTCAGCACCTATACCAGGGGATTCTGAGAAACCTATGTCTGAAACTTCGTTGGTTTCAAATGCAGTAAATATTGGAGGTCAACAAGCATATGGTGCTCCAGAAGCCATCCATTGTTCTTTTGATGGGTTGAATGCTGCTGAGCAACCTATTCAGAGATTGATTAAAATGTCAACTTCACTTGTTCCCCACTGTTGCTCTGGCAGTGATGATCAAGATCTTTCAGTAAAGGTAAAGTCGAAGCTCAATTTCTCTTTCTGGAACCTGATGGAACCCTTGTCACTTGGGGAGATAGCAAGGACATGGAATGTATGTGCCCGAGTGGTGATCTCTGAATATGCAGAGCATAATGGAGGAGGAAGCTTCAGTTCTAAGTATGGCACCTGGGAAGACTGCCTTAGTGTTGCAGCTGCTTCAATCATTTTCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

177

Amino Acids

18.85

Weight (kDa)

6.28

Isoelectric Point (pI)

46.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012182)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G18540 AT5G18540 AT5G18540 AT5G18540
fragaria_vesca FvH4_4g17670 FvH4_4g17670
malus_domestica MD13G1170800.v1.1
prunus_persica Prupe.1G139200_v2.0.a1
pyrus_communis pycom13g14650
rosa_chinensis RchiOBHm_Chr4g0421611
rosa_laevigata RLG00000007664
rosa_multiflora Rmu_ssc0000097.1_g000003
rosa_roxburghii Rroxscaffold_5G00363860
rosa_rugosa Rorug04G0173800
rosa_samantha Rh4AG233500 Rh4BG236400 Rh4CG248100 Rh4DG232300
rosa_wichuraiana Rw4G020060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 482
AcsI RAATTY 1 cut(s) 81
AcuI CTGAAG 3 cut(s) 90, 92, 451
AfiI CCNNNNNNNGG 1 cut(s) 119
AgsI TTSAA 4 cut(s) 60, 162, 235, 519
AjnI CCWGG 2 cut(s) 118, 485
AluBI AGCT 5 cut(s) 66, 104, 346, 465, 512
AluI AGCT 5 cut(s) 66, 104, 346, 465, 512
Alw21I GWGCWC 1 cut(s) 202
Ama87I CYCGRG 1 cut(s) 420
ApeKI GCWGC 3 cut(s) 239, 509, 512
ApoI RAATTY 1 cut(s) 81
Asp700I GAANNNNTTC 1 cut(s) 85
AsuHPI GGTGA 1 cut(s) 439
AvaI CYCGRG 1 cut(s) 420
BaeGI GKGCMC 1 cut(s) 421
BanI GGYRCC 1 cut(s) 482
BbsI GAAGAC 1 cut(s) 498
Bbv12I GWGCWC 1 cut(s) 202
BbvI GCAGC 3 cut(s) 226, 499, 521
BccI CCATC 3 cut(s) 218, 221, 364
BciT130I CCWGG 2 cut(s) 120, 487
BclI TGATCA 1 cut(s) 313
BglII AGATCT 1 cut(s) 319
BisI GCNGC 3 cut(s) 240, 510, 513
BlpI GCTNAGC 1 cut(s) 243
BlsI GCNGC 3 cut(s) 241, 511, 514
Bme1390I CCNGG 2 cut(s) 120, 487
BmeT110I CYCGRG 1 cut(s) 420
BmiI GGNNCC 4 cut(s) 96, 365, 375, 484
BmrFI CCNGG 2 cut(s) 120, 487
BpiI GAAGAC 1 cut(s) 498
BpmI CTGGAG 1 cut(s) 186
Bpu10I CCTNAGC 1 cut(s) 100
Bpu1102I GCTNAGC 1 cut(s) 243
BsaBI GATNNNNATC 1 cut(s) 318
BsaJI CCNNGG 2 cut(s) 119, 486
Bsc4I CCNNNNNNNGG 1 cut(s) 119
Bse8I GATNNNNATC 1 cut(s) 318
BseBI CCWGG 2 cut(s) 120, 487
BseDI CCNNGG 2 cut(s) 119, 486
BseGI GGATG 1 cut(s) 210
BseJI GATNNNNATC 1 cut(s) 318
BseLI CCNNNNNNNGG 1 cut(s) 119
BseMII CTCAG 2 cut(s) 120, 234
BseRI GAGGAG 1 cut(s) 471
BseSI GKGCMC 1 cut(s) 421
BseXI GCAGC 3 cut(s) 226, 499, 521
BshNI GGYRCC 1 cut(s) 482
BsiHKAI GWGCWC 1 cut(s) 202
BsiHKCI CYCGRG 1 cut(s) 420
BslI CCNNNNNNNGG 1 cut(s) 119
BsmI GAATGC 1 cut(s) 241
BsoBI CYCGRG 1 cut(s) 420
Bsp1286I GDGCHC 2 cut(s) 202, 421
Bsp143I GATC 3 cut(s) 313, 319, 429
Bsp1720I GCTNAGC 1 cut(s) 243
BspCNI CTCAG 2 cut(s) 121, 235
BspLI GGNNCC 4 cut(s) 96, 365, 375, 484
BspT107I GGYRCC 1 cut(s) 482
BssECI CCNNGG 2 cut(s) 119, 486
BssMI GATC 3 cut(s) 313, 319, 429
Bst2UI CCWGG 2 cut(s) 120, 487
Bst4CI ACNGT 1 cut(s) 296
BstAPI GCANNNNNTGC 1 cut(s) 197
BstDEI CTNAG 5 cut(s) 100, 129, 243, 474, 500
BstENI CCTNNNNNAGG 1 cut(s) 117
BstF5I GGATG 1 cut(s) 210
BstKTI GATC 3 cut(s) 316, 322, 432
BstMBI GATC 3 cut(s) 313, 319, 429
BstMWI GCNNNNNNNGC 3 cut(s) 101, 197, 206
BstNI CCWGG 2 cut(s) 120, 487
BstSCI CCNGG 2 cut(s) 118, 485
BstSLI GKGCMC 1 cut(s) 421
BstV1I GCAGC 3 cut(s) 226, 499, 521
BstV2I GAAGAC 1 cut(s) 498
BstX2I RGATCY 1 cut(s) 319
BstYI RGATCY 1 cut(s) 319
BtsCI GGATG 1 cut(s) 210
BtsI GCAGTG 1 cut(s) 313
BtsIMutI CAGTG 3 cut(s) 68, 292, 313
CviAII CATG 1 cut(s) 405
CviJI RGCY 8 cut(s) 66, 77, 95, 104, 209, 346, 465, 512
CviKI_1 RGCY 8 cut(s) 66, 77, 95, 104, 209, 346, 465, 512
DdeI CTNAG 5 cut(s) 100, 129, 243, 474, 500
DpnI GATC 3 cut(s) 315, 321, 431
DpnII GATC 3 cut(s) 313, 319, 429
Eco57I CTGAAG 3 cut(s) 90, 92, 451
Eco88I CYCGRG 1 cut(s) 420
EcoNI CCTNNNNNAGG 1 cut(s) 117
EcoRII CCWGG 2 cut(s) 118, 485
FaeI CATG 1 cut(s) 408
FalI AAGNNNNNCTT 2 cut(s) 483, 515
FatI CATG 1 cut(s) 404
FauNDI CATATG 1 cut(s) 193
FbaI TGATCA 1 cut(s) 313
Fnu4HI GCNGC 3 cut(s) 240, 510, 513
FokI GGATG 1 cut(s) 197
Fsp4HI GCNGC 3 cut(s) 240, 510, 513
GluI GCNGC 3 cut(s) 240, 510, 513
GsuI CTGGAG 1 cut(s) 186
Hin1II CATG 1 cut(s) 408
HincII GTYRAC 2 cut(s) 185, 276
HindII GTYRAC 2 cut(s) 185, 276
HindIII AAGCTT 1 cut(s) 463
HinfI GANTC 2 cut(s) 16, 125
HphI GGTGA 1 cut(s) 439
Hpy166II GTNNAC 2 cut(s) 185, 276
Hpy188I TCNGA 4 cut(s) 130, 145, 258, 436
Hpy188III TCNNGA 5 cut(s) 60, 203, 317, 361, 531
Hpy8I GTNNAC 2 cut(s) 185, 276
HpyAV CCTTC 1 cut(s) 67
HpyCH4III ACNGT 1 cut(s) 296
HpyCH4V TGCA 3 cut(s) 167, 443, 509
HpyF10VI GCNNNNNNNGC 3 cut(s) 101, 197, 206
HpyF3I CTNAG 5 cut(s) 100, 129, 243, 474, 500
Hsp92II CATG 1 cut(s) 408
Ksp22I TGATCA 1 cut(s) 313
Kzo9I GATC 3 cut(s) 313, 319, 429
LmnI GCTCC 2 cut(s) 100, 205
Lsp1109I GCAGC 3 cut(s) 226, 499, 521
MaeIII GTNAC 1 cut(s) 381
MalI GATC 3 cut(s) 315, 321, 431
MboI GATC 3 cut(s) 313, 319, 429
MboII GAAGA 4 cut(s) 11, 25, 78, 503
MflI RGATCY 1 cut(s) 319
MhlI GDGCHC 2 cut(s) 202, 421
MluCI AATT 2 cut(s) 81, 349
MnlI CCTC 3 cut(s) 173, 449, 452
MroXI GAANNNNTTC 1 cut(s) 85
MseI TTAA 1 cut(s) 267
MspA1I CMGCKG 1 cut(s) 512
MspR9I CCNGG 2 cut(s) 120, 487
Mva1269I GAATGC 1 cut(s) 241
MvaI CCWGG 2 cut(s) 120, 487
MwoI GCNNNNNNNGC 3 cut(s) 101, 197, 206
NdeI CATATG 1 cut(s) 193
NdeII GATC 3 cut(s) 313, 319, 429
NlaIII CATG 1 cut(s) 408
NlaIV GGNNCC 4 cut(s) 96, 365, 375, 484
NmuCI GTSAC 1 cut(s) 381
PctI GAATGC 1 cut(s) 241
PdmI GAANNNNTTC 1 cut(s) 85
PfeI GAWTC 2 cut(s) 16, 125
PkrI GCNGC 3 cut(s) 241, 511, 514
Psp6I CCWGG 2 cut(s) 118, 485
PspGI CCWGG 2 cut(s) 118, 485
PspN4I GGNNCC 4 cut(s) 96, 365, 375, 484
PsuI RGATCY 1 cut(s) 319
PvuII CAGCTG 1 cut(s) 512
SaqAI TTAA 1 cut(s) 267
SatI GCNGC 3 cut(s) 240, 510, 513
Sau3AI GATC 3 cut(s) 313, 319, 429
ScrFI CCNGG 2 cut(s) 120, 487
SduI GDGCHC 2 cut(s) 202, 421
Sse9I AATT 2 cut(s) 81, 349
SspI AATATT 1 cut(s) 175
StyD4I CCNGG 2 cut(s) 118, 485
TaaI ACNGT 1 cut(s) 296
TaqI TCGA 1 cut(s) 341
TasI AATT 2 cut(s) 81, 349
TfiI GAWTC 2 cut(s) 16, 125
Tru1I TTAA 1 cut(s) 267
Tru9I TTAA 1 cut(s) 267
TscAI CASTG 3 cut(s) 75, 299, 313
TseFI GTSAC 1 cut(s) 381
TseI GCWGC 3 cut(s) 239, 509, 512
Tsp45I GTSAC 1 cut(s) 381
TspRI CASTG 3 cut(s) 75, 299, 313
XagI CCTNNNNNAGG 1 cut(s) 117
XapI RAATTY 1 cut(s) 81
XcmI CCANNNNNNNNNTGG 1 cut(s) 299
XmnI GAANNNNTTC 1 cut(s) 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.