AT5G18970

AWPM-19-like family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0014400
Physical Location & Seq
Reverse (-)
6333211 .. 6334642
1432 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G18970.1

Sequence Viewer

Length: 516 bp
ATGGCTTCAGGAGGATCAAAGTCGGCAGCTTTCATGCTTCTGATGCTGAATCTTGGTCTCTATTTCGTCATCACCATCATCGCTTCTTGGGCTGTTAATCACGGCATCGAGAGAACTCGCGAGTCTGCGTCGACACTGTCACTTCCGGCGAAGATATTCCCGATATACTTCCCGGTGGGGAACATGGCGACCGGTTTTTTCGTAATATTCACGTTAATCGCCGGCGTCGTCGGAATGGCCACATCACTCACCGGAATCATCAACGTTCTTCAATGGGACTCTCCGAATCTCCACTCCGCCGCGGCTTCCTCTCTAATCTCCTGGTCTCTCACTCTCCTCGCCATGGGATTGGCCTGCAAGGAGATCAACATAGGCTGGACCGAAGCCAATCTAAGAACTCTTGAAGTTCTGACTATAATTGTGAGTGCTACTCAGTTGTTGTGCACCGGAGCTATTCATGCTGGAGTCGGAGAAACAGTCGCCTCCGGAGAAAGGCCTCATCTTGGGAGAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AWPM-19

Protein Analysis

171

Amino Acids

18.02

Weight (kDa)

6.9

Isoelectric Point (pI)

32.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AWPM-19 PF05512 15 - 155 4.1e-61 AWPM-19-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014400)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G18970
fragaria_vesca FvH4_4g14182
malus_domestica MD13G1180300.v1.1 MD16G1181200.v1.1
prunus_persica Prupe.1G148600_v2.0.a1
pyrus_communis pycom13g15560 pycom16g15200
rosa_chinensis RchiOBHm_Chr4g0419021
rosa_laevigata RLG00000007832
rosa_multiflora Rmu_co8230677.1_g000001 Rmu_sc0005646.1_g000002
rosa_roxburghii Rroxscaffold_5G00362080
rosa_rugosa Rorug04G0156500
rosa_samantha Rh4AG218000 Rh4BG212200 Rh4DG216600
rosa_wichuraiana Rw4G018640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 131
AccII CGCG 2 cut(s) 120, 302
AccIII TCCGGA 1 cut(s) 485
AciI CCGC 3 cut(s) 297, 300, 302
AclI AACGTT 1 cut(s) 264
AclWI GGATC 1 cut(s) 22
AcoI YGGCCR 1 cut(s) 237
AcyI GRCGYC 1 cut(s) 225
AfiI CCNNNNNNNGG 3 cut(s) 343, 492, 503
AgeI ACCGGT 1 cut(s) 191
AgsI TTSAA 2 cut(s) 272, 404
AjnI CCWGG 1 cut(s) 320
AluBI AGCT 2 cut(s) 29, 452
AluI AGCT 2 cut(s) 29, 452
Alw21I GWGCWC 1 cut(s) 446
Alw26I GTCTC 2 cut(s) 62, 330
Alw44I GTGCAC 1 cut(s) 442
AlwI GGATC 1 cut(s) 22
Aor13HI TCCGGA 1 cut(s) 485
AoxI GGCC 3 cut(s) 237, 351, 494
ApaLI GTGCAC 1 cut(s) 442
ApeKI GCWGC 1 cut(s) 26
AsiGI ACCGGT 1 cut(s) 191
Asp700I GAANNNNTTC 1 cut(s) 155
AspS9I GGNCC 1 cut(s) 378
AsuC2I CCSGG 1 cut(s) 173
AsuHPI GGTGA 2 cut(s) 64, 241
AvaII GGWCC 1 cut(s) 378
BaeGI GKGCMC 1 cut(s) 446
BalI TGGCCA 1 cut(s) 239
Bbv12I GWGCWC 1 cut(s) 446
BbvI GCAGC 1 cut(s) 38
BccI CCATC 1 cut(s) 83
BceAI ACGGC 1 cut(s) 118
BciT130I CCWGG 1 cut(s) 322
BcnI CCSGG 1 cut(s) 173
BcoDI GTCTC 2 cut(s) 62, 330
BisI GCNGC 3 cut(s) 27, 300, 303
BlsI GCNGC 3 cut(s) 28, 301, 304
Bme1390I CCNGG 2 cut(s) 173, 322
Bme18I GGWCC 1 cut(s) 378
BmgT120I GGNCC 1 cut(s) 378
BmrFI CCNGG 2 cut(s) 173, 322
BmsI GCATC 2 cut(s) 33, 114
BplI GAGNNNNNCTC 2 cut(s) 415, 447
BpmI CTGGAG 1 cut(s) 483
BpuMI CCSGG 1 cut(s) 173
BsaHI GRCGYC 1 cut(s) 225
BsaI GGTCTC 2 cut(s) 62, 330
BsaJI CCNNGG 2 cut(s) 300, 342
BsaWI WCCGGW 4 cut(s) 191, 251, 446, 485
BsaXI ACNNNNNCTCC 2 cut(s) 462, 492
Bsc4I CCNNNNNNNGG 3 cut(s) 343, 492, 503
Bse118I RCCGGY 2 cut(s) 191, 221
BseAI TCCGGA 1 cut(s) 485
BseBI CCWGG 1 cut(s) 322
BseDI CCNNGG 2 cut(s) 300, 342
BseLI CCNNNNNNNGG 3 cut(s) 343, 492, 503
BseMII CTCAG 1 cut(s) 446
BseRI GAGGAG 1 cut(s) 326
BseSI GKGCMC 1 cut(s) 446
BseXI GCAGC 1 cut(s) 38
Bsh1236I CGCG 2 cut(s) 120, 302
Bsh1285I CGRYCG 1 cut(s) 192
BshFI GGCC 3 cut(s) 239, 353, 496
BshTI ACCGGT 1 cut(s) 191
BsiEI CGRYCG 1 cut(s) 192
BsiHKAI GWGCWC 1 cut(s) 446
BsiSI CCGG 7 cut(s) 146, 173, 192, 222, 252, 447, 486
BslFI GGGAC 1 cut(s) 290
BslI CCNNNNNNNGG 3 cut(s) 343, 492, 503
BsmAI GTCTC 2 cut(s) 62, 330
BsmFI GGGAC 1 cut(s) 290
BsnI GGCC 3 cut(s) 239, 353, 496
Bso31I GGTCTC 2 cut(s) 62, 330
Bsp1286I GDGCHC 1 cut(s) 446
Bsp13I TCCGGA 1 cut(s) 485
Bsp143I GATC 2 cut(s) 14, 363
Bsp19I CCATGG 1 cut(s) 342
Bsp68I TCGCGA 1 cut(s) 120
BspACI CCGC 3 cut(s) 297, 300, 302
BspANI GGCC 3 cut(s) 239, 353, 496
BspCNI CTCAG 1 cut(s) 445
BspEI TCCGGA 1 cut(s) 485
BspFNI CGCG 2 cut(s) 120, 302
BspPI GGATC 1 cut(s) 22
BspTNI GGTCTC 2 cut(s) 62, 330
BsrFI RCCGGY 2 cut(s) 191, 221
BssAI RCCGGY 2 cut(s) 191, 221
BssECI CCNNGG 2 cut(s) 300, 342
BssMI GATC 2 cut(s) 14, 363
BssNI GRCGYC 1 cut(s) 225
BssT1I CCWWGG 1 cut(s) 342
Bst2UI CCWGG 1 cut(s) 322
Bst4CI ACNGT 2 cut(s) 138, 478
BstACI GRCGYC 1 cut(s) 225
BstC8I GCNNGC 2 cut(s) 223, 355
BstDEI CTNAG 2 cut(s) 392, 432
BstDSI CCRYGG 2 cut(s) 300, 342
BstFNI CGCG 2 cut(s) 120, 302
BstKTI GATC 2 cut(s) 17, 366
BstMAI GTCTC 2 cut(s) 62, 330
BstMBI GATC 2 cut(s) 14, 363
BstMCI CGRYCG 1 cut(s) 192
BstMWI GCNNNNNNNGC 3 cut(s) 43, 89, 458
BstNI CCWGG 1 cut(s) 322
BstSCI CCNGG 2 cut(s) 171, 320
BstSLI GKGCMC 1 cut(s) 446
BstUI CGCG 2 cut(s) 120, 302
BstV1I GCAGC 1 cut(s) 38
BstXI CCANNNNNNTGG 1 cut(s) 349
BsuRI GGCC 3 cut(s) 239, 353, 496
BtgI CCRYGG 2 cut(s) 300, 342
BtgZI GCGATG 1 cut(s) 64
BtsIMutI CAGTG 1 cut(s) 134
BtuMI TCGCGA 1 cut(s) 120
Cac8I GCNNGC 2 cut(s) 223, 355
Cfr10I RCCGGY 2 cut(s) 191, 221
Cfr13I GGNCC 1 cut(s) 378
Cfr42I CCGCGG 1 cut(s) 303
CseI GACGC 2 cut(s) 117, 214
CspAI ACCGGT 1 cut(s) 191
CviAII CATG 4 cut(s) 34, 184, 343, 458
DdeI CTNAG 2 cut(s) 392, 432
DpnI GATC 2 cut(s) 16, 365
DpnII GATC 2 cut(s) 14, 363
EaeI YGGCCR 1 cut(s) 237
EciI GGCGGA 1 cut(s) 286
Eco130I CCWWGG 1 cut(s) 342
Eco147I AGGCCT 1 cut(s) 496
Eco31I GGTCTC 2 cut(s) 62, 330
Eco47I GGWCC 1 cut(s) 378
EcoRII CCWGG 1 cut(s) 320
EcoT14I CCWWGG 1 cut(s) 342
ErhI CCWWGG 1 cut(s) 342
FaeI CATG 4 cut(s) 37, 187, 346, 461
FaiI YATR 7 cut(s) 35, 166, 185, 344, 371, 416, 459
FaqI GGGAC 1 cut(s) 290
FatI CATG 4 cut(s) 33, 183, 342, 457
FblI GTMKAC 1 cut(s) 131
Fnu4HI GCNGC 3 cut(s) 27, 300, 303
Fsp4HI GCNGC 3 cut(s) 27, 300, 303
GluI GCNGC 3 cut(s) 27, 300, 303
GsuI CTGGAG 1 cut(s) 483
HaeIII GGCC 3 cut(s) 239, 353, 496
HapII CCGG 7 cut(s) 146, 173, 192, 222, 252, 447, 486
HgaI GACGC 2 cut(s) 117, 214
Hin1I GRCGYC 1 cut(s) 225
Hin1II CATG 4 cut(s) 37, 187, 346, 461
HincII GTYRAC 1 cut(s) 132
HindII GTYRAC 1 cut(s) 132
HinfI GANTC 6 cut(s) 49, 122, 255, 278, 286, 465
HpaII CCGG 7 cut(s) 146, 173, 192, 222, 252, 447, 486
HphI GGTGA 2 cut(s) 64, 241
Hpy166II GTNNAC 2 cut(s) 132, 444
Hpy188I TCNGA 5 cut(s) 42, 233, 285, 411, 470
Hpy188III TCNNGA 6 cut(s) 9, 109, 119, 160, 401, 486
Hpy8I GTNNAC 2 cut(s) 132, 444
Hpy99I CGWCG 3 cut(s) 133, 230, 233
HpyCH4III ACNGT 2 cut(s) 138, 478
HpyCH4IV ACGT 2 cut(s) 212, 264
HpyCH4V TGCA 2 cut(s) 357, 444
HpyF10VI GCNNNNNNNGC 3 cut(s) 43, 89, 458
HpyF3I CTNAG 2 cut(s) 392, 432
HpySE526I ACGT 2 cut(s) 212, 264
Hsp92I GRCGYC 1 cut(s) 225
Hsp92II CATG 4 cut(s) 37, 187, 346, 461
Kpn2I TCCGGA 1 cut(s) 485
KroI GCCGGC 1 cut(s) 221
KroNI GCCGGC 1 cut(s) 223
KspI CCGCGG 1 cut(s) 303
Kzo9I GATC 2 cut(s) 14, 363
LmnI GCTCC 1 cut(s) 449
Lsp1109I GCAGC 1 cut(s) 38
LweI GCATC 2 cut(s) 33, 114
MaeII ACGT 2 cut(s) 212, 264
MaeIII GTNAC 1 cut(s) 138
MalI GATC 2 cut(s) 16, 365
MboI GATC 2 cut(s) 14, 363
MboII GAAGA 2 cut(s) 163, 260
MhlI GDGCHC 1 cut(s) 446
MlsI TGGCCA 1 cut(s) 239
MluCI AATT 1 cut(s) 417
MluNI TGGCCA 1 cut(s) 239
MlyI GAGTC 3 cut(s) 131, 272, 474
MmeI TCCRAC 2 cut(s) 211, 448
MnlI CCTC 5 cut(s) 5, 319, 347, 493, 507
Mox20I TGGCCA 1 cut(s) 239
MreI CGCCGGCG 1 cut(s) 221
MroI TCCGGA 1 cut(s) 485
MroNI GCCGGC 1 cut(s) 221
MroXI GAANNNNTTC 1 cut(s) 155
MscI TGGCCA 1 cut(s) 239
MseI TTAA 2 cut(s) 96, 215
Msp20I TGGCCA 1 cut(s) 239
MspA1I CMGCKG 1 cut(s) 302
MspI CCGG 7 cut(s) 146, 173, 192, 222, 252, 447, 486
MspR9I CCNGG 2 cut(s) 173, 322
MvaI CCWGG 1 cut(s) 322
MvnI CGCG 2 cut(s) 120, 302
MwoI GCNNNNNNNGC 3 cut(s) 43, 89, 458
NaeI GCCGGC 1 cut(s) 223
NciI CCSGG 1 cut(s) 173
NcoI CCATGG 1 cut(s) 342
NdeII GATC 2 cut(s) 14, 363
NgoMIV GCCGGC 1 cut(s) 221
NlaIII CATG 4 cut(s) 37, 187, 346, 461
NmuCI GTSAC 1 cut(s) 138
NruI TCGCGA 1 cut(s) 120
PceI AGGCCT 1 cut(s) 496
PcsI WCGNNNNNNNCGW 1 cut(s) 225
PdiI GCCGGC 1 cut(s) 223
PdmI GAANNNNTTC 1 cut(s) 155
PfeI GAWTC 3 cut(s) 49, 255, 286
PflFI GACNNNGTC 1 cut(s) 136
PinAI ACCGGT 1 cut(s) 191
PkrI GCNGC 3 cut(s) 28, 301, 304
PleI GAGTC 3 cut(s) 130, 272, 473
PpsI GAGTC 3 cut(s) 130, 272, 473
Psp1406I AACGTT 1 cut(s) 264
Psp6I CCWGG 1 cut(s) 320
PspGI CCWGG 1 cut(s) 320
PspPI GGNCC 1 cut(s) 378
PsyI GACNNNGTC 1 cut(s) 136
RruI TCGCGA 1 cut(s) 120
SacII CCGCGG 1 cut(s) 303
SalI GTCGAC 1 cut(s) 130
SaqAI TTAA 2 cut(s) 96, 215
SatI GCNGC 3 cut(s) 27, 300, 303
Sau3AI GATC 2 cut(s) 14, 363
Sau96I GGNCC 1 cut(s) 378
SchI GAGTC 3 cut(s) 131, 272, 474
ScrFI CCNGG 2 cut(s) 173, 322
SduI GDGCHC 1 cut(s) 446
SetI ASST 4 cut(s) 31, 215, 267, 454
SfaNI GCATC 2 cut(s) 33, 114
Sfr303I CCGCGG 1 cut(s) 303
SgrAI CRCCGGYG 1 cut(s) 221
SgrBI CCGCGG 1 cut(s) 303
SinI GGWCC 1 cut(s) 378
Sse9I AATT 1 cut(s) 417
SseBI AGGCCT 1 cut(s) 496
SsiI CCGC 3 cut(s) 297, 300, 302
SspI AATATT 1 cut(s) 207
StuI AGGCCT 1 cut(s) 496
StyD4I CCNGG 2 cut(s) 171, 320
StyI CCWWGG 1 cut(s) 342
TaaI ACNGT 2 cut(s) 138, 478
TaiI ACGT 2 cut(s) 215, 267
TaqI TCGA 2 cut(s) 108, 131
TaqII GACCGA 1 cut(s) 395
TasI AATT 1 cut(s) 417
TauI GCSGC 2 cut(s) 302, 305
TfiI GAWTC 3 cut(s) 49, 255, 286
Tru1I TTAA 2 cut(s) 96, 215
Tru9I TTAA 2 cut(s) 96, 215
TscAI CASTG 1 cut(s) 141
TseFI GTSAC 1 cut(s) 138
TseI GCWGC 1 cut(s) 26
Tsp45I GTSAC 1 cut(s) 138
TspDTI ATGAA 2 cut(s) 22, 446
TspRI CASTG 1 cut(s) 141
Tth111I GACNNNGTC 1 cut(s) 136
VneI GTGCAC 1 cut(s) 442
VpaK11BI GGWCC 1 cut(s) 378
XmiI GTMKAC 1 cut(s) 131
XmnI GAANNNNTTC 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.