Rorug04G0156500

AWPM-19-like family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0014400
Physical Location & Seq
Reverse (-)
27338368 .. 27339381
1014 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0156500.1

Sequence Viewer

Length: 1014 bp
ATGGGTGAAGAAGACGAAGAGAGGGCTTGTGATCCTTTGAAAGACGACAAGTACAAGTACTCCCCATCTTTATTGTTGAGGAGAGTACTCACAGAGGAGTTGGCCGCCCAAGACCTTCACAGAAACCACAAAAACAACAAGCTTCTCGTCGCTGCGGTGCATGCTGTGCTCTTAGACTCCGGTTTCGTTCGCTTTAGTTCGGGTACGTCAGTCCTTGATGCCCTCTTAGAGTTAGGTTTCACCGAGTTCGGTTCGGTATCGGGTATGTCACATTCCTACACTTTGCCTGAGATTCTTATCGAACAAGATAATTGTGATTGTAGTAGTAATCGGAAGATGGAAGGAATTGTTTTGAAGTTTGAGAATTTAGGTAACTTTTCGTCTGACCAGAAAAGAACAAAACATGTGGCTCCTCGCATGGTGAAAGTTAGTGGGTCCTTGATTAATTCTGGTTCTAGGTTTGGGCAGAAGCACAAGAAGGTATGTTTGGAATTGGATGAGAATAAGTTTGCGCCGGCGATTGAGTTTTTTTGGGGAAACAATACGAGGAATACTGTGAATGATTTGGGATTTCGTGAAAGACAAGTTTGTGAGTTTTGGAAAATCGTCAAGGATGAGATTGCACTTCCATTGCTGATTGATCTTTGCGCAGAGGCCGGTTTGCCTGCTCCATTGTGCCTTATGAGCCTTCCTCCGGAGCTCAAAATGAAGATTTTGGAGGCAATGCCTGGTGCTGATCTTGCCAAAGTAGGGGGTGTTTGTAAGGAGCTGCGAGATCTTGCAAATGACAATGAGTTGTGGAAGCACAAGTTAGCCCAGGAGTTTTCTGGTACAAGAGAAGTAGTAGAACTCTGGAAAGTTACTTTTCATCGACAATGGGAGACTAAAAAGGAGCAAGCAAAGAAACTAGTGGGAAAAAAGAGAGGACGTGACTCACGTGAGAACGTTTATTGTTTCGATTGGCAACCACGCCCTAAATATCCTAAATGGAGTCATGAACCATATTTCTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AWPM-19

Protein Analysis

337

Amino Acids

38.5

Weight (kDa)

7.57

Isoelectric Point (pI)

49.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 229 - 269 1.1e-09 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014400)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G18970
fragaria_vesca FvH4_4g14182
malus_domestica MD13G1180300.v1.1 MD16G1181200.v1.1
prunus_persica Prupe.1G148600_v2.0.a1
pyrus_communis pycom13g15560 pycom16g15200
rosa_chinensis RchiOBHm_Chr4g0419021
rosa_laevigata RLG00000007832
rosa_multiflora Rmu_co8230677.1_g000001 Rmu_sc0005646.1_g000002
rosa_roxburghii Rroxscaffold_5G00362080
rosa_rugosa Rorug04G0156500
rosa_samantha Rh4AG218000 Rh4BG212200 Rh4DG216600
rosa_wichuraiana Rw4G018640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 649
AccIII TCCGGA 1 cut(s) 694
AciI CCGC 2 cut(s) 105, 155
AclI AACGTT 1 cut(s) 945
AclWI GGATC 1 cut(s) 26
AcoI YGGCCR 1 cut(s) 102
AcsI RAATTY 1 cut(s) 364
AcvI CACGTG 1 cut(s) 938
AfaI GTAC 5 cut(s) 53, 59, 87, 205, 832
AfiI CCNNNNNNNGG 2 cut(s) 694, 750
AflIII ACRYGT 1 cut(s) 403
AgsI TTSAA 2 cut(s) 40, 355
AhlI ACTAGT 1 cut(s) 907
AjiI CACGTC 1 cut(s) 929
AjnI CCWGG 2 cut(s) 727, 816
AjuI GAANNNNNNNTTGG 2 cut(s) 470, 502
AluBI AGCT 3 cut(s) 142, 700, 769
AluI AGCT 3 cut(s) 142, 700, 769
Alw21I GWGCWC 2 cut(s) 171, 702
Alw26I GTCTC 1 cut(s) 875
AlwI GGATC 1 cut(s) 26
Aor13HI TCCGGA 1 cut(s) 694
AoxI GGCC 2 cut(s) 102, 654
ApeKI GCWGC 2 cut(s) 152, 769
ApoI RAATTY 1 cut(s) 364
ArsI GACNNNNNNTTYG 2 cut(s) 167, 199
AseI ATTAAT 1 cut(s) 444
AspLEI GCGC 2 cut(s) 514, 650
AspS9I GGNCC 1 cut(s) 435
AsuHPI GGTGA 3 cut(s) 17, 232, 433
AvaII GGWCC 1 cut(s) 435
BaeI ACNNNNGTAYC 2 cut(s) 195, 228
BanII GRGCYC 1 cut(s) 702
BbrPI CACGTG 1 cut(s) 938
BbsI GAAGAC 1 cut(s) 18
Bbv12I GWGCWC 2 cut(s) 171, 702
BbvI GCAGC 2 cut(s) 139, 756
BccI CCATC 2 cut(s) 73, 331
BciT130I CCWGG 2 cut(s) 729, 818
BcoDI GTCTC 1 cut(s) 875
BcuI ACTAGT 1 cut(s) 907
BfaI CTAG 2 cut(s) 456, 908
BglII AGATCT 1 cut(s) 775
BisI GCNGC 3 cut(s) 105, 153, 770
BlsI GCNGC 3 cut(s) 106, 154, 771
BmcAI AGTACT 2 cut(s) 59, 87
Bme1390I CCNGG 2 cut(s) 729, 818
Bme18I GGWCC 1 cut(s) 435
BmgBI CACGTC 1 cut(s) 929
BmgT120I GGNCC 1 cut(s) 435
BmiI GGNNCC 2 cut(s) 411, 436
BmrFI CCNGG 2 cut(s) 729, 818
BmsI GCATC 1 cut(s) 208
BpiI GAAGAC 1 cut(s) 18
BplI GAGNNNNNCTC 2 cut(s) 676, 708
BsaAI YACGTR 1 cut(s) 938
BsaBI GATNNNNATC 1 cut(s) 296
BsaJI CCNNGG 1 cut(s) 816
BsaWI WCCGGW 2 cut(s) 179, 694
BsaXI ACNNNNNCTCC 2 cut(s) 44, 74
Bsc4I CCNNNNNNNGG 2 cut(s) 694, 750
Bse118I RCCGGY 2 cut(s) 514, 656
Bse3DI GCAATG 2 cut(s) 629, 729
Bse8I GATNNNNATC 1 cut(s) 296
BseAI TCCGGA 1 cut(s) 694
BseBI CCWGG 2 cut(s) 729, 818
BseDI CCNNGG 1 cut(s) 816
BseGI GGATG 2 cut(s) 502, 619
BseJI GATNNNNATC 1 cut(s) 296
BseLI CCNNNNNNNGG 2 cut(s) 694, 750
BseMI GCAATG 2 cut(s) 629, 729
BseMII CTCAG 1 cut(s) 279
BseRI GAGGAG 3 cut(s) 94, 110, 402
BseXI GCAGC 2 cut(s) 139, 756
BshFI GGCC 2 cut(s) 104, 656
BsiHKAI GWGCWC 2 cut(s) 171, 702
BsiSI CCGG 4 cut(s) 180, 515, 657, 695
BslI CCNNNNNNNGG 2 cut(s) 694, 750
BsmAI GTCTC 1 cut(s) 875
BsnI GGCC 2 cut(s) 104, 656
Bsp1286I GDGCHC 2 cut(s) 171, 702
Bsp13I TCCGGA 1 cut(s) 694
Bsp143I GATC 4 cut(s) 31, 640, 736, 775
BspACI CCGC 2 cut(s) 105, 155
BspANI GGCC 2 cut(s) 104, 656
BspCNI CTCAG 1 cut(s) 280
BspEI TCCGGA 1 cut(s) 694
BspHI TCATGA 1 cut(s) 994
BspLI GGNNCC 2 cut(s) 411, 436
BspPI GGATC 1 cut(s) 26
BsrDI GCAATG 2 cut(s) 629, 729
BsrFI RCCGGY 2 cut(s) 514, 656
BssAI RCCGGY 2 cut(s) 514, 656
BssECI CCNNGG 1 cut(s) 816
BssMI GATC 4 cut(s) 31, 640, 736, 775
Bst2UI CCWGG 2 cut(s) 729, 818
Bst4CI ACNGT 1 cut(s) 556
Bst6I CTCTTC 1 cut(s) 12
BstAPI GCANNNNNTGC 1 cut(s) 166
BstBAI YACGTR 1 cut(s) 938
BstC8I GCNNGC 4 cut(s) 162, 516, 666, 897
BstDEI CTNAG 3 cut(s) 172, 226, 288
BstF5I GGATG 2 cut(s) 502, 619
BstHHI GCGC 2 cut(s) 514, 650
BstKTI GATC 4 cut(s) 34, 643, 739, 778
BstMAI GTCTC 1 cut(s) 875
BstMBI GATC 4 cut(s) 31, 640, 736, 775
BstMWI GCNNNNNNNGC 4 cut(s) 161, 166, 684, 740
BstNI CCWGG 2 cut(s) 729, 818
BstNSI RCATGY 2 cut(s) 164, 407
BstSCI CCNGG 2 cut(s) 727, 816
BstV1I GCAGC 2 cut(s) 139, 756
BstV2I GAAGAC 1 cut(s) 18
BstX2I RGATCY 1 cut(s) 775
BstYI RGATCY 1 cut(s) 775
BsuRI GGCC 2 cut(s) 104, 656
BtrI CACGTC 1 cut(s) 929
BtsCI GGATG 2 cut(s) 502, 619
Cac8I GCNNGC 4 cut(s) 162, 516, 666, 897
CciI TCATGA 1 cut(s) 994
CfoI GCGC 2 cut(s) 514, 650
Cfr10I RCCGGY 2 cut(s) 514, 656
Cfr13I GGNCC 1 cut(s) 435
Csp6I GTAC 5 cut(s) 52, 58, 86, 204, 831
CspCI CAANNNNNGTGG 2 cut(s) 387, 422
CviAII CATG 4 cut(s) 161, 404, 418, 995
CviJI RGCY 9 cut(s) 26, 104, 142, 410, 656, 687, 700, 769, 815
CviKI_1 RGCY 9 cut(s) 26, 104, 142, 410, 656, 687, 700, 769, 815
CviQI GTAC 5 cut(s) 52, 58, 86, 204, 831
DdeI CTNAG 3 cut(s) 172, 226, 288
DpnI GATC 4 cut(s) 33, 642, 738, 777
DpnII GATC 4 cut(s) 31, 640, 736, 775
EaeI YGGCCR 1 cut(s) 102
Eam1104I CTCTTC 1 cut(s) 12
EarI CTCTTC 1 cut(s) 12
Ecl136II GAGCTC 1 cut(s) 700
Eco24I GRGCYC 1 cut(s) 702
Eco47I GGWCC 1 cut(s) 435
Eco53kI GAGCTC 1 cut(s) 700
Eco72I CACGTG 1 cut(s) 938
EcoICRI GAGCTC 1 cut(s) 700
EcoO109I RGGNCCY 1 cut(s) 435
EcoRII CCWGG 2 cut(s) 727, 816
EcoT38I GRGCYC 1 cut(s) 702
FaeI CATG 4 cut(s) 164, 407, 421, 998
FaiI YATR 8 cut(s) 162, 266, 405, 419, 484, 683, 996, 1003
FatI CATG 4 cut(s) 160, 403, 417, 994
Fnu4HI GCNGC 3 cut(s) 105, 153, 770
FokI GGATG 2 cut(s) 509, 626
FriOI GRGCYC 1 cut(s) 702
Fsp4HI GCNGC 3 cut(s) 105, 153, 770
FspBI CTAG 2 cut(s) 456, 908
FspI TGCGCA 1 cut(s) 649
GlaI GCGC 2 cut(s) 513, 649
GluI GCNGC 3 cut(s) 105, 153, 770
HaeIII GGCC 2 cut(s) 104, 656
HapII CCGG 4 cut(s) 180, 515, 657, 695
HhaI GCGC 2 cut(s) 514, 650
Hin1II CATG 4 cut(s) 164, 407, 421, 998
Hin6I GCGC 2 cut(s) 512, 648
HinP1I GCGC 2 cut(s) 512, 648
HindIII AAGCTT 1 cut(s) 140
HinfI GANTC 4 cut(s) 176, 292, 932, 991
HpaII CCGG 4 cut(s) 180, 515, 657, 695
HphI GGTGA 3 cut(s) 17, 232, 433
Hpy188I TCNGA 2 cut(s) 333, 385
Hpy188III TCNNGA 4 cut(s) 575, 695, 853, 995
Hpy99I CGWCG 1 cut(s) 152
HpyAV CCTTC 4 cut(s) 125, 335, 472, 698
HpyCH4III ACNGT 1 cut(s) 556
HpyCH4IV ACGT 4 cut(s) 206, 928, 937, 945
HpyCH4V TGCA 3 cut(s) 160, 623, 782
HpyF10VI GCNNNNNNNGC 4 cut(s) 161, 166, 684, 740
HpyF3I CTNAG 3 cut(s) 172, 226, 288
HpySE526I ACGT 4 cut(s) 206, 928, 937, 945
Hsp92II CATG 4 cut(s) 164, 407, 421, 998
HspAI GCGC 2 cut(s) 512, 648
Kpn2I TCCGGA 1 cut(s) 694
KroI GCCGGC 1 cut(s) 514
KroNI GCCGGC 1 cut(s) 516
Kzo9I GATC 4 cut(s) 31, 640, 736, 775
LmnI GCTCC 5 cut(s) 415, 673, 697, 766, 892
Lsp1109I GCAGC 2 cut(s) 139, 756
LweI GCATC 1 cut(s) 208
MaeI CTAG 2 cut(s) 456, 908
MaeII ACGT 4 cut(s) 206, 928, 937, 945
MaeIII GTNAC 4 cut(s) 267, 371, 859, 929
MalI GATC 4 cut(s) 33, 642, 738, 777
MboI GATC 4 cut(s) 31, 640, 736, 775
MboII GAAGA 5 cut(s) 20, 23, 29, 346, 721
MflI RGATCY 1 cut(s) 775
MhlI GDGCHC 2 cut(s) 171, 702
MluCI AATT 5 cut(s) 310, 345, 364, 445, 491
MlyI GAGTC 3 cut(s) 170, 926, 1000
MreI CGCCGGCG 1 cut(s) 514
MroI TCCGGA 1 cut(s) 694
MroNI GCCGGC 1 cut(s) 514
MseI TTAA 1 cut(s) 444
MspI CCGG 4 cut(s) 180, 515, 657, 695
MspR9I CCNGG 2 cut(s) 729, 818
MvaI CCWGG 2 cut(s) 729, 818
MwoI GCNNNNNNNGC 4 cut(s) 161, 166, 684, 740
NaeI GCCGGC 1 cut(s) 516
NdeII GATC 4 cut(s) 31, 640, 736, 775
NgoMIV GCCGGC 1 cut(s) 514
NlaIII CATG 4 cut(s) 164, 407, 421, 998
NlaIV GGNNCC 2 cut(s) 411, 436
NmuCI GTSAC 2 cut(s) 267, 929
NsbI TGCGCA 1 cut(s) 649
NspI RCATGY 2 cut(s) 164, 407
PaeI GCATGC 1 cut(s) 164
PagI TCATGA 1 cut(s) 994
PciI ACATGT 1 cut(s) 403
PcsI WCGNNNNNNNCGW 1 cut(s) 934
PdiI GCCGGC 1 cut(s) 516
PfeI GAWTC 1 cut(s) 292
PkrI GCNGC 3 cut(s) 106, 154, 771
PleI GAGTC 3 cut(s) 170, 926, 999
PmaCI CACGTG 1 cut(s) 938
PmlI CACGTG 1 cut(s) 938
PpsI GAGTC 3 cut(s) 170, 926, 999
Ppu21I YACGTR 1 cut(s) 938
PpuMI RGGWCCY 1 cut(s) 435
PscI ACATGT 1 cut(s) 403
PshBI ATTAAT 1 cut(s) 444
Psp124BI GAGCTC 1 cut(s) 702
Psp1406I AACGTT 1 cut(s) 945
Psp5II RGGWCCY 1 cut(s) 435
Psp6I CCWGG 2 cut(s) 727, 816
PspCI CACGTG 1 cut(s) 938
PspGI CCWGG 2 cut(s) 727, 816
PspN4I GGNNCC 2 cut(s) 411, 436
PspPI GGNCC 1 cut(s) 435
PspPPI RGGWCCY 1 cut(s) 435
PsuI RGATCY 1 cut(s) 775
RsaI GTAC 5 cut(s) 53, 59, 87, 205, 832
RsaNI GTAC 5 cut(s) 52, 58, 86, 204, 831
SacI GAGCTC 1 cut(s) 702
SaqAI TTAA 1 cut(s) 444
SatI GCNGC 3 cut(s) 105, 153, 770
Sau3AI GATC 4 cut(s) 31, 640, 736, 775
Sau96I GGNCC 1 cut(s) 435
ScaI AGTACT 2 cut(s) 59, 87
SchI GAGTC 3 cut(s) 170, 926, 1000
ScrFI CCNGG 2 cut(s) 729, 818
SduI GDGCHC 2 cut(s) 171, 702
SfaNI GCATC 1 cut(s) 208
SgrAI CRCCGGYG 1 cut(s) 514
SinI GGWCC 1 cut(s) 435
SpeI ACTAGT 1 cut(s) 907
SphI GCATGC 1 cut(s) 164
Sse9I AATT 5 cut(s) 310, 345, 364, 445, 491
SsiI CCGC 2 cut(s) 105, 155
SspMI CTAG 2 cut(s) 456, 908
SstI GAGCTC 1 cut(s) 702
StyD4I CCNGG 2 cut(s) 727, 816
TaaI ACNGT 1 cut(s) 556
TaiI ACGT 4 cut(s) 209, 931, 940, 948
TaqI TCGA 3 cut(s) 300, 871, 957
TasI AATT 5 cut(s) 310, 345, 364, 445, 491
TatI WGTACW 3 cut(s) 51, 57, 85
TauI GCSGC 1 cut(s) 107
TfiI GAWTC 1 cut(s) 292
Tru1I TTAA 1 cut(s) 444
Tru9I TTAA 1 cut(s) 444
TseFI GTSAC 2 cut(s) 267, 929
TseI GCWGC 2 cut(s) 152, 769
Tsp45I GTSAC 2 cut(s) 267, 929
TspDTI ATGAA 3 cut(s) 722, 857, 1011
VpaK11BI GGWCC 1 cut(s) 435
VspI ATTAAT 1 cut(s) 444
XapI RAATTY 1 cut(s) 364
XceI RCATGY 2 cut(s) 164, 407
XcmI CCANNNNNNNNNTGG 1 cut(s) 824
XspI CTAG 2 cut(s) 456, 908
ZrmI AGTACT 2 cut(s) 59, 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.