MD13G1180300.v1.1

AWPM-19-like family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0014400
Physical Location & Seq
Reverse (-)
15017084 .. 15018324
1241 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1180300.v1.1.491

Sequence Viewer

Length: 405 bp
ATGGCTAATGGAGGGCCAAAATCTGCAGCATCAATTCTCCTAATTGTTAATCTTGTTCTGTATTTCATTGTGATTGTCATCGCTTCTTGGGCTGTCAACCATGGAATCCAAAGGTCTGGCGAAACCGCATCTGTGTTGTCGATTCCTGCTCGGATATTTCCAATATATTTTCCATTTGGGAATACGGCTACTGGGTTCTTTGTGATCTTCTCCCTCATTGCTGGAGTTGTTGGATTTGGGACCTCACTCACTGGACTCCACAACGTTTTCCAATGGGACGGCCCCAGCTTGCACACAGCTGCTGCTGCTTCTCTTGCTACTTGGTCACTCACCCTTCTTGCCATGGGATTGGCATGTAAAGAGATTGATCTTGGTTGGACAGATTCCAACTTGTGGATCCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AWPM-19

Protein Analysis

135

Amino Acids

14.2

Weight (kDa)

6.22

Isoelectric Point (pI)

22.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AWPM-19 PF05512 15 - 134 2.6e-48 AWPM-19-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014400)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G18970
fragaria_vesca FvH4_4g14182
malus_domestica MD13G1180300.v1.1 MD16G1181200.v1.1
prunus_persica Prupe.1G148600_v2.0.a1
pyrus_communis pycom13g15560 pycom16g15200
rosa_chinensis RchiOBHm_Chr4g0419021
rosa_laevigata RLG00000007832
rosa_multiflora Rmu_co8230677.1_g000001 Rmu_sc0005646.1_g000002
rosa_roxburghii Rroxscaffold_5G00362080
rosa_rugosa Rorug04G0156500
rosa_samantha Rh4AG218000 Rh4BG212200 Rh4DG216600
rosa_wichuraiana Rw4G018640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 393
AciI CCGC 1 cut(s) 126
AclI AACGTT 1 cut(s) 264
AclWI GGATC 2 cut(s) 391, 404
AfiI CCNNNNNNNGG 1 cut(s) 393
AluBI AGCT 2 cut(s) 288, 299
AluI AGCT 2 cut(s) 288, 299
AlwI GGATC 2 cut(s) 391, 404
AlwNI CAGNNNCTG 1 cut(s) 302
AoxI GGCC 2 cut(s) 14, 280
ApeKI GCWGC 4 cut(s) 26, 299, 302, 305
AspS9I GGNCC 3 cut(s) 14, 240, 281
AsuHPI GGTGA 1 cut(s) 322
AvaII GGWCC 1 cut(s) 240
BamHI GGATCC 1 cut(s) 396
BbvI GCAGC 4 cut(s) 38, 286, 289, 292
BceAI ACGGC 2 cut(s) 201, 295
BfmI CTRYAG 1 cut(s) 24
BisI GCNGC 4 cut(s) 27, 300, 303, 306
BlsI GCNGC 4 cut(s) 28, 301, 304, 307
Bme18I GGWCC 1 cut(s) 240
BmgT120I GGNCC 3 cut(s) 14, 240, 281
BmiI GGNNCC 3 cut(s) 241, 283, 398
BmrI ACTGGG 1 cut(s) 201
BmsI GCATC 2 cut(s) 38, 137
BmuI ACTGGG 1 cut(s) 201
BpmI CTGGAG 1 cut(s) 243
BsaBI GATNNNNATC 1 cut(s) 77
BsaJI CCNNGG 2 cut(s) 100, 342
Bsc4I CCNNNNNNNGG 1 cut(s) 393
Bse1I ACTGG 2 cut(s) 196, 256
Bse3DI GCAATG 1 cut(s) 216
Bse8I GATNNNNATC 1 cut(s) 77
BseDI CCNNGG 2 cut(s) 100, 342
BseJI GATNNNNATC 1 cut(s) 77
BseLI CCNNNNNNNGG 1 cut(s) 393
BseMI GCAATG 1 cut(s) 216
BseNI ACTGG 2 cut(s) 196, 256
BseXI GCAGC 4 cut(s) 38, 286, 289, 292
BseYI CCCAGC 1 cut(s) 284
BshFI GGCC 2 cut(s) 16, 282
BslFI GGGAC 2 cut(s) 253, 290
BslI CCNNNNNNNGG 1 cut(s) 393
BsmFI GGGAC 2 cut(s) 253, 290
BsnI GGCC 2 cut(s) 16, 282
Bsp143I GATC 3 cut(s) 204, 367, 396
Bsp19I CCATGG 2 cut(s) 100, 342
BspACI CCGC 1 cut(s) 126
BspANI GGCC 2 cut(s) 16, 282
BspLI GGNNCC 3 cut(s) 241, 283, 398
BspMAI CTGCAG 1 cut(s) 28
BspPI GGATC 2 cut(s) 391, 404
BsrDI GCAATG 1 cut(s) 216
BsrI ACTGG 2 cut(s) 196, 256
BssECI CCNNGG 2 cut(s) 100, 342
BssMI GATC 3 cut(s) 204, 367, 396
BssT1I CCWWGG 2 cut(s) 100, 342
BstC8I GCNNGC 1 cut(s) 290
BstDSI CCRYGG 2 cut(s) 100, 342
BstKTI GATC 3 cut(s) 207, 370, 399
BstMBI GATC 3 cut(s) 204, 367, 396
BstMWI GCNNNNNNNGC 3 cut(s) 89, 305, 314
BstNSI RCATGY 1 cut(s) 357
BstSFI CTRYAG 1 cut(s) 24
BstV1I GCAGC 4 cut(s) 38, 286, 289, 292
BstX2I RGATCY 1 cut(s) 396
BstXI CCANNNNNNTGG 2 cut(s) 116, 349
BstYI RGATCY 1 cut(s) 396
BsuRI GGCC 2 cut(s) 16, 282
BtgI CCRYGG 2 cut(s) 100, 342
BtgZI GCGATG 1 cut(s) 64
BtsIMutI CAGTG 1 cut(s) 249
Cac8I GCNNGC 1 cut(s) 290
CaiI CAGNNNCTG 1 cut(s) 302
Cfr13I GGNCC 3 cut(s) 14, 240, 281
CviAII CATG 3 cut(s) 101, 343, 354
CviJI RGCY 7 cut(s) 5, 16, 92, 188, 282, 288, 299
CviKI_1 RGCY 7 cut(s) 5, 16, 92, 188, 282, 288, 299
DpnI GATC 3 cut(s) 206, 369, 398
DpnII GATC 3 cut(s) 204, 367, 396
Eco130I CCWWGG 2 cut(s) 100, 342
Eco47I GGWCC 1 cut(s) 240
EcoO109I RGGNCCY 1 cut(s) 240
EcoT14I CCWWGG 2 cut(s) 100, 342
ErhI CCWWGG 2 cut(s) 100, 342
FaeI CATG 3 cut(s) 104, 346, 357
FaiI YATR 4 cut(s) 102, 166, 344, 355
FaqI GGGAC 2 cut(s) 253, 290
FatI CATG 3 cut(s) 100, 342, 353
Fnu4HI GCNGC 4 cut(s) 27, 300, 303, 306
Fsp4HI GCNGC 4 cut(s) 27, 300, 303, 306
GluI GCNGC 4 cut(s) 27, 300, 303, 306
GsaI CCCAGC 1 cut(s) 288
GsuI CTGGAG 1 cut(s) 243
HaeIII GGCC 2 cut(s) 16, 282
Hin1II CATG 3 cut(s) 104, 346, 357
HincII GTYRAC 1 cut(s) 97
HindII GTYRAC 1 cut(s) 97
HinfI GANTC 4 cut(s) 105, 142, 255, 383
HphI GGTGA 1 cut(s) 322
Hpy166II GTNNAC 1 cut(s) 97
Hpy188I TCNGA 1 cut(s) 153
Hpy8I GTNNAC 1 cut(s) 97
HpyAV CCTTC 1 cut(s) 344
HpyCH4IV ACGT 1 cut(s) 264
HpyCH4V TGCA 2 cut(s) 26, 292
HpyF10VI GCNNNNNNNGC 3 cut(s) 89, 305, 314
HpySE526I ACGT 1 cut(s) 264
Hsp92II CATG 3 cut(s) 104, 346, 357
Kzo9I GATC 3 cut(s) 204, 367, 396
LpnPI CCDG 6 cut(s) 102, 159, 177, 207, 237, 298
Lsp1109I GCAGC 4 cut(s) 38, 286, 289, 292
LweI GCATC 2 cut(s) 38, 137
MaeII ACGT 1 cut(s) 264
MaeIII GTNAC 1 cut(s) 324
MalI GATC 3 cut(s) 206, 369, 398
MboI GATC 3 cut(s) 204, 367, 396
MboII GAAGA 1 cut(s) 199
MflI RGATCY 1 cut(s) 396
MluCI AATT 2 cut(s) 33, 42
MlyI GAGTC 1 cut(s) 249
MmeI TCCRAC 2 cut(s) 211, 356
MnlI CCTC 3 cut(s) 5, 224, 253
MseI TTAA 1 cut(s) 48
MspA1I CMGCKG 1 cut(s) 299
MwoI GCNNNNNNNGC 3 cut(s) 89, 305, 314
NcoI CCATGG 2 cut(s) 100, 342
NdeII GATC 3 cut(s) 204, 367, 396
NlaIII CATG 3 cut(s) 104, 346, 357
NlaIV GGNNCC 3 cut(s) 241, 283, 398
NmuCI GTSAC 1 cut(s) 324
NspI RCATGY 1 cut(s) 357
PfeI GAWTC 3 cut(s) 105, 142, 383
PflMI CCANNNNNTGG 1 cut(s) 393
PkrI GCNGC 4 cut(s) 28, 301, 304, 307
PleI GAGTC 1 cut(s) 249
PpsI GAGTC 1 cut(s) 249
PpuMI RGGWCCY 1 cut(s) 240
Psp1406I AACGTT 1 cut(s) 264
Psp5II RGGWCCY 1 cut(s) 240
PspFI CCCAGC 1 cut(s) 284
PspN4I GGNNCC 3 cut(s) 241, 283, 398
PspPI GGNCC 3 cut(s) 14, 240, 281
PspPPI RGGWCCY 1 cut(s) 240
PstI CTGCAG 1 cut(s) 28
PstNI CAGNNNCTG 1 cut(s) 302
PsuI RGATCY 1 cut(s) 396
PvuII CAGCTG 1 cut(s) 299
SaqAI TTAA 1 cut(s) 48
SatI GCNGC 4 cut(s) 27, 300, 303, 306
Sau3AI GATC 3 cut(s) 204, 367, 396
Sau96I GGNCC 3 cut(s) 14, 240, 281
SchI GAGTC 1 cut(s) 249
SetI ASST 5 cut(s) 116, 245, 267, 290, 301
SfaNI GCATC 2 cut(s) 38, 137
SfcI CTRYAG 1 cut(s) 24
SinI GGWCC 1 cut(s) 240
Sse9I AATT 2 cut(s) 33, 42
SsiI CCGC 1 cut(s) 126
StyI CCWWGG 2 cut(s) 100, 342
TaiI ACGT 1 cut(s) 267
TaqI TCGA 1 cut(s) 140
TasI AATT 2 cut(s) 33, 42
TfiI GAWTC 3 cut(s) 105, 142, 383
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
TscAI CASTG 1 cut(s) 256
TseFI GTSAC 1 cut(s) 324
TseI GCWGC 4 cut(s) 26, 299, 302, 305
Tsp45I GTSAC 1 cut(s) 324
TspDTI ATGAA 1 cut(s) 55
TspRI CASTG 1 cut(s) 256
Van91I CCANNNNNTGG 1 cut(s) 393
VpaK11BI GGWCC 1 cut(s) 240
XceI RCATGY 1 cut(s) 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.