Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0014400

Physical Location & Seq

Genomic Coordinates Reverse (-)

11652666 .. 11654476

Gene Structure 1811 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G148600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGACTTCTGGAGGGCCAAAATCAGCAGCATCCATTCTCTTGATCGTTAACCTTGTTCTGTATTTTATTGTGATTGTGATTGCTTCTTGGGCTGTCAACCATGGCATCCAAAGGTCTCGTGATACAGCTTCTGTTTTAACAATTCCAGCGCGAATATTTCCAATCTACTTCCCATTTGGGAACATGGCAACTGGTTTCTTTGTGATTTTCTCCCTCCTTGCTGGTGTTGTTGGCTTTGCCACCTCTCTTACTGGACTTCACAACGTTGTCCAATGGGACAGGCCCAACTTGCACACAGCTGCTGCCTCTTCTCTTGGAACTTTCTCCCTCACTCTTCTTGCAATGGGATTGGCTTGTAAAGAAATTCAACTTGGTTGGACCGATTCGAACTTGCGTACTTTGGAGACCATAACAATAATAGTGAGTGCAACGCAGTTGTTTTCTACTTGTGCCATCCATGCTGGGGTTGAAGATGTTATTGTTCGAGAAAGGGGCAGCACTGGAAGATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AWPM-19

Protein Analysis

171

Amino Acids

18.21

Weight (kDa)

8.8

Isoelectric Point (pI)

22.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014400)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18970
fragaria_vesca	FvH4_4g14182
malus_domestica	MD13G1180300.v1.1 MD16G1181200.v1.1
prunus_persica	Prupe.1G148600_v2.0.a1
pyrus_communis	pycom13g15560 pycom16g15200
rosa_chinensis	RchiOBHm_Chr4g0419021
rosa_laevigata	RLG00000007832
rosa_multiflora	Rmu_co8230677.1_g000001 Rmu_sc0005646.1_g000002
rosa_roxburghii	Rroxscaffold_5G00362080
rosa_rugosa	Rorug04G0156500
rosa_samantha	Rh4AG218000 Rh4BG212200 Rh4DG216600
rosa_wichuraiana	Rw4G018640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	151
AclI	AACGTT	1 cut(s)	264
AcsI	RAATTY	1 cut(s)	363
AfaI	GTAC	1 cut(s)	397
AfiI	CCNNNNNNNGG	1 cut(s)	463
AgsI	TTSAA	2 cut(s)	368, 470
AjuI	GAANNNNNNNTTGG	2 cut(s)	354, 386
AluBI	AGCT	2 cut(s)	128, 299
AluI	AGCT	2 cut(s)	128, 299
Alw26I	GTCTC	2 cut(s)	120, 398
AlwNI	CAGNNNCTG	2 cut(s)	131, 302
AoxI	GGCC	2 cut(s)	14, 281
ApeKI	GCWGC	4 cut(s)	26, 299, 302, 495
ApoI	RAATTY	1 cut(s)	363
AspLEI	GCGC	1 cut(s)	151
AspS9I	GGNCC	3 cut(s)	14, 282, 378
AsuII	TTCGAA	1 cut(s)	386
AvaII	GGWCC	1 cut(s)	378
BauI	CACGAG	1 cut(s)	117
BbvI	GCAGC	4 cut(s)	38, 286, 289, 507
BccI	CCATC	1 cut(s)	461
BcoDI	GTCTC	2 cut(s)	120, 398
BisI	GCNGC	4 cut(s)	27, 300, 303, 496
BlsI	GCNGC	4 cut(s)	28, 301, 304, 497
Bme18I	GGWCC	1 cut(s)	378
BmgT120I	GGNCC	3 cut(s)	14, 282, 378
BmsI	GCATC	2 cut(s)	38, 114
BpmI	CTGGAG	1 cut(s)	30
Bpu14I	TTCGAA	1 cut(s)	386
BsaI	GGTCTC	2 cut(s)	120, 398
BsaJI	CCNNGG	1 cut(s)	100
Bsc4I	CCNNNNNNNGG	1 cut(s)	463
Bse1I	ACTGG	3 cut(s)	196, 256, 505
Bse3DI	GCAATG	1 cut(s)	348
BseDI	CCNNGG	1 cut(s)	100
BseGI	GGATG	3 cut(s)	29, 105, 453
BseLI	CCNNNNNNNGG	1 cut(s)	463
BseMI	GCAATG	1 cut(s)	348
BseNI	ACTGG	3 cut(s)	196, 256, 505
BseXI	GCAGC	4 cut(s)	38, 286, 289, 507
BseYI	CCCAGC	1 cut(s)	461
Bsh1236I	CGCG	1 cut(s)	151
BshFI	GGCC	2 cut(s)	16, 283
BslFI	GGGAC	1 cut(s)	290
BslI	CCNNNNNNNGG	1 cut(s)	463
BsmAI	GTCTC	2 cut(s)	120, 398
BsmFI	GGGAC	1 cut(s)	290
BsnI	GGCC	2 cut(s)	16, 283
Bso31I	GGTCTC	2 cut(s)	120, 398
Bsp119I	TTCGAA	1 cut(s)	386
Bsp143I	GATC	1 cut(s)	42
Bsp19I	CCATGG	1 cut(s)	100
BspANI	GGCC	2 cut(s)	16, 283
BspFNI	CGCG	1 cut(s)	151
BspT104I	TTCGAA	1 cut(s)	386
BspTNI	GGTCTC	2 cut(s)	120, 398
BsrDI	GCAATG	1 cut(s)	348
BsrI	ACTGG	3 cut(s)	196, 256, 505
BssECI	CCNNGG	1 cut(s)	100
BssMI	GATC	1 cut(s)	42
BssSI	CACGAG	1 cut(s)	117
BssT1I	CCWWGG	1 cut(s)	100
Bst2BI	CACGAG	1 cut(s)	117
Bst6I	CTCTTC	2 cut(s)	313, 339
BstBI	TTCGAA	1 cut(s)	386
BstDSI	CCRYGG	1 cut(s)	100
BstF5I	GGATG	3 cut(s)	29, 105, 453
BstFNI	CGCG	1 cut(s)	151
BstHHI	GCGC	1 cut(s)	151
BstKTI	GATC	1 cut(s)	45
BstMAI	GTCTC	2 cut(s)	120, 398
BstMBI	GATC	1 cut(s)	42
BstMWI	GCNNNNNNNGC	3 cut(s)	89, 289, 458
BstUI	CGCG	1 cut(s)	151
BstV1I	GCAGC	4 cut(s)	38, 286, 289, 507
BsuRI	GGCC	2 cut(s)	16, 283
BtgI	CCRYGG	1 cut(s)	100
BtsCI	GGATG	3 cut(s)	29, 105, 453
BtsIMutI	CAGTG	1 cut(s)	498
CaiI	CAGNNNCTG	2 cut(s)	131, 302
CfoI	GCGC	1 cut(s)	151
Cfr13I	GGNCC	3 cut(s)	14, 282, 378
Csp6I	GTAC	1 cut(s)	396
CviAII	CATG	3 cut(s)	101, 184, 458
CviJI	RGCY	7 cut(s)	16, 92, 128, 234, 283, 299, 353
CviKI_1	RGCY	7 cut(s)	16, 92, 128, 234, 283, 299, 353
CviQI	GTAC	1 cut(s)	396
DpnI	GATC	1 cut(s)	44
DpnII	GATC	1 cut(s)	42
Eam1104I	CTCTTC	2 cut(s)	313, 339
EarI	CTCTTC	2 cut(s)	313, 339
Eco130I	CCWWGG	1 cut(s)	100
Eco31I	GGTCTC	2 cut(s)	120, 398
Eco47I	GGWCC	1 cut(s)	378
EcoT14I	CCWWGG	1 cut(s)	100
ErhI	CCWWGG	1 cut(s)	100
FaeI	CATG	3 cut(s)	104, 187, 461
FaiI	YATR	4 cut(s)	102, 185, 410, 459
FaqI	GGGAC	1 cut(s)	290
FatI	CATG	3 cut(s)	100, 183, 457
Fnu4HI	GCNGC	4 cut(s)	27, 300, 303, 496
FokI	GGATG	3 cut(s)	16, 92, 440
Fsp4HI	GCNGC	4 cut(s)	27, 300, 303, 496
GlaI	GCGC	1 cut(s)	150
GluI	GCNGC	4 cut(s)	27, 300, 303, 496
GsaI	CCCAGC	1 cut(s)	465
GsuI	CTGGAG	1 cut(s)	30
HaeIII	GGCC	2 cut(s)	16, 283
HhaI	GCGC	1 cut(s)	151
Hin1II	CATG	3 cut(s)	104, 187, 461
Hin6I	GCGC	1 cut(s)	149
HinP1I	GCGC	1 cut(s)	149
HincII	GTYRAC	2 cut(s)	49, 97
HindII	GTYRAC	2 cut(s)	49, 97
HinfI	GANTC	1 cut(s)	383
HpaI	GTTAAC	1 cut(s)	49
Hpy166II	GTNNAC	2 cut(s)	49, 97
Hpy188III	TCNNGA	4 cut(s)	9, 40, 119, 485
Hpy8I	GTNNAC	2 cut(s)	49, 97
HpyCH4IV	ACGT	1 cut(s)	264
HpyCH4V	TGCA	3 cut(s)	292, 341, 428
HpyF10VI	GCNNNNNNNGC	3 cut(s)	89, 289, 458
HpySE526I	ACGT	1 cut(s)	264
Hsp92II	CATG	3 cut(s)	104, 187, 461
HspAI	GCGC	1 cut(s)	149
KspAI	GTTAAC	1 cut(s)	49
Kzo9I	GATC	1 cut(s)	42
LpnPI	CCDG	7 cut(s)	159, 177, 207, 237, 265, 447, 486
Lsp1109I	GCAGC	4 cut(s)	38, 286, 289, 507
LweI	GCATC	2 cut(s)	38, 114
MaeII	ACGT	1 cut(s)	264
MalI	GATC	1 cut(s)	44
MboI	GATC	1 cut(s)	42
MboII	GAAGA	3 cut(s)	300, 326, 482
MluCI	AATT	2 cut(s)	141, 363
MmeI	TCCRAC	1 cut(s)	356
MnlI	CCTC	5 cut(s)	5, 224, 253, 316, 338
MseI	TTAA	3 cut(s)	48, 137, 511
MspA1I	CMGCKG	1 cut(s)	299
MvnI	CGCG	1 cut(s)	151
MwoI	GCNNNNNNNGC	3 cut(s)	89, 289, 458
NcoI	CCATGG	1 cut(s)	100
NdeII	GATC	1 cut(s)	42
NlaIII	CATG	3 cut(s)	104, 187, 461
NspV	TTCGAA	1 cut(s)	386
PfeI	GAWTC	1 cut(s)	383
PkrI	GCNGC	4 cut(s)	28, 301, 304, 497
Psp1406I	AACGTT	1 cut(s)	264
PspFI	CCCAGC	1 cut(s)	461
PspPI	GGNCC	3 cut(s)	14, 282, 378
PstNI	CAGNNNCTG	2 cut(s)	131, 302
PvuII	CAGCTG	1 cut(s)	299
RsaI	GTAC	1 cut(s)	397
RsaNI	GTAC	1 cut(s)	396
SaqAI	TTAA	3 cut(s)	48, 137, 511
SatI	GCNGC	4 cut(s)	27, 300, 303, 496
Sau3AI	GATC	1 cut(s)	42
Sau96I	GGNCC	3 cut(s)	14, 282, 378
SetI	ASST	6 cut(s)	54, 116, 130, 245, 267, 301
SfaNI	GCATC	2 cut(s)	38, 114
SfuI	TTCGAA	1 cut(s)	386
SinI	GGWCC	1 cut(s)	378
Sse9I	AATT	2 cut(s)	141, 363
SspI	AATATT	1 cut(s)	156
StyI	CCWWGG	1 cut(s)	100
TaiI	ACGT	1 cut(s)	267
TaqI	TCGA	2 cut(s)	386, 484
TaqII	GACCGA	1 cut(s)	395
TasI	AATT	2 cut(s)	141, 363
TfiI	GAWTC	1 cut(s)	383
Tru1I	TTAA	3 cut(s)	48, 137, 511
Tru9I	TTAA	3 cut(s)	48, 137, 511
TscAI	CASTG	1 cut(s)	505
TseI	GCWGC	4 cut(s)	26, 299, 302, 495
TspRI	CASTG	1 cut(s)	505
VpaK11BI	GGWCC	1 cut(s)	378
XapI	RAATTY	1 cut(s)	363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.