FvH4_4g14182

AWPM-19-like family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0014400
Physical Location & Seq
Reverse (-)
17782446 .. 17783637
1192 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g14182.t1

Sequence Viewer

Length: 516 bp
ATGGCTACTGGTGGAGGGGCAAAATCAGCAGCCTATGTTCTCTTACTTGTTAATCTTGTTCTCTTCTTCATTGTGACTGTCATAGCTGCATGGGCAATGAACCATGGGATCGAAAGGTCTCATGAAACAGCATCTGTTTTGTCCATACCATTGCGCATTTTTCCAATATATTTCCCAATGGGAAATATGGCAACTGGTTTCTTTGTAATCTTCTCCCTCATTGCCGGTGTTGTTGGAATTGCCACCTCACTTAACGGACTTCATAACGTTTTTCAATGGGATGCCCCCAGTTTACACACAGCTGCTGCCTCTTCTCTTGTATCTTGGTCCCTCACTCTTCTTTCAATGGGATTGGCTTGTAAAGAGATTGAACTTGGTTGGACAACTGGGAACTTGCGCACCTTGGAGACCATAACAATAATTGTGAGTGCAACTCAGTTGTTTTCTACTTGTGCCATCCAAGCTGGAGTTGAAGAGGCTATTGCAGAAAAAATGGATCAGGCTGGAAGATATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AWPM-19

Protein Analysis

172

Amino Acids

18.22

Weight (kDa)

5.72

Isoelectric Point (pI)

26.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AWPM-19 PF05512 16 - 156 1.5e-56 AWPM-19-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014400)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G18970
fragaria_vesca FvH4_4g14182
malus_domestica MD13G1180300.v1.1 MD16G1181200.v1.1
prunus_persica Prupe.1G148600_v2.0.a1
pyrus_communis pycom13g15560 pycom16g15200
rosa_chinensis RchiOBHm_Chr4g0419021
rosa_laevigata RLG00000007832
rosa_multiflora Rmu_co8230677.1_g000001 Rmu_sc0005646.1_g000002
rosa_roxburghii Rroxscaffold_5G00362080
rosa_rugosa Rorug04G0156500
rosa_samantha Rh4AG218000 Rh4BG212200 Rh4DG216600
rosa_wichuraiana Rw4G018640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 155, 398
AclI AACGTT 1 cut(s) 267
AclWI GGATC 2 cut(s) 116, 504
AgsI TTSAA 4 cut(s) 275, 345, 371, 473
AluBI AGCT 3 cut(s) 86, 302, 464
AluI AGCT 3 cut(s) 86, 302, 464
Alw26I GTCTC 2 cut(s) 123, 401
AlwI GGATC 2 cut(s) 116, 504
AlwNI CAGNNNCTG 2 cut(s) 134, 305
ApeKI GCWGC 4 cut(s) 29, 86, 302, 305
AspLEI GCGC 2 cut(s) 156, 399
AspS9I GGNCC 1 cut(s) 327
AvaII GGWCC 1 cut(s) 327
BbvI GCAGC 4 cut(s) 41, 73, 289, 292
BccI CCATC 1 cut(s) 464
BcoDI GTCTC 2 cut(s) 123, 401
BisI GCNGC 4 cut(s) 30, 87, 303, 306
BlsI GCNGC 4 cut(s) 31, 88, 304, 307
Bme18I GGWCC 1 cut(s) 327
BmgT120I GGNCC 1 cut(s) 327
BmiI GGNNCC 1 cut(s) 329
BmrI ACTGGG 2 cut(s) 282, 396
BmsI GCATC 2 cut(s) 140, 271
BmuI ACTGGG 2 cut(s) 282, 396
BplI GAGNNNNNCTC 2 cut(s) 418, 450
BpmI CTGGAG 1 cut(s) 486
BsaI GGTCTC 2 cut(s) 123, 401
BsaJI CCNNGG 2 cut(s) 103, 402
Bse118I RCCGGY 1 cut(s) 224
Bse1I ACTGG 4 cut(s) 13, 199, 288, 391
Bse3DI GCAATG 3 cut(s) 102, 149, 219
BseDI CCNNGG 2 cut(s) 103, 402
BseGI GGATG 2 cut(s) 286, 456
BseMI GCAATG 3 cut(s) 102, 149, 219
BseMII CTCAG 1 cut(s) 449
BseNI ACTGG 4 cut(s) 13, 199, 288, 391
BseXI GCAGC 4 cut(s) 41, 73, 289, 292
BsiSI CCGG 1 cut(s) 225
BslFI GGGAC 1 cut(s) 313
BsmAI GTCTC 2 cut(s) 123, 401
BsmFI GGGAC 1 cut(s) 313
Bso31I GGTCTC 2 cut(s) 123, 401
Bsp143I GATC 2 cut(s) 108, 496
Bsp19I CCATGG 1 cut(s) 103
BspCNI CTCAG 1 cut(s) 448
BspHI TCATGA 1 cut(s) 121
BspLI GGNNCC 1 cut(s) 329
BspPI GGATC 2 cut(s) 116, 504
BspTNI GGTCTC 2 cut(s) 123, 401
BsrDI GCAATG 3 cut(s) 102, 149, 219
BsrFI RCCGGY 1 cut(s) 224
BsrI ACTGG 4 cut(s) 13, 199, 288, 391
BssAI RCCGGY 1 cut(s) 224
BssECI CCNNGG 2 cut(s) 103, 402
BssMI GATC 2 cut(s) 108, 496
BssT1I CCWWGG 2 cut(s) 103, 402
Bst4CI ACNGT 1 cut(s) 79
Bst6I CTCTTC 4 cut(s) 68, 316, 342, 468
BstDEI CTNAG 1 cut(s) 435
BstDSI CCRYGG 1 cut(s) 103
BstF5I GGATG 2 cut(s) 286, 456
BstHHI GCGC 2 cut(s) 156, 399
BstKTI GATC 2 cut(s) 111, 499
BstMAI GTCTC 2 cut(s) 123, 401
BstMBI GATC 2 cut(s) 108, 496
BstMWI GCNNNNNNNGC 3 cut(s) 26, 92, 461
BstV1I GCAGC 4 cut(s) 41, 73, 289, 292
BtgI CCRYGG 1 cut(s) 103
BtsCI GGATG 2 cut(s) 286, 456
CaiI CAGNNNCTG 2 cut(s) 134, 305
CciI TCATGA 1 cut(s) 121
CfoI GCGC 2 cut(s) 156, 399
Cfr10I RCCGGY 1 cut(s) 224
Cfr13I GGNCC 1 cut(s) 327
CviAII CATG 3 cut(s) 90, 104, 122
CviJI RGCY 8 cut(s) 5, 32, 86, 302, 356, 464, 479, 503
CviKI_1 RGCY 8 cut(s) 5, 32, 86, 302, 356, 464, 479, 503
DdeI CTNAG 1 cut(s) 435
DpnI GATC 2 cut(s) 110, 498
DpnII GATC 2 cut(s) 108, 496
Eam1104I CTCTTC 4 cut(s) 68, 316, 342, 468
EarI CTCTTC 4 cut(s) 68, 316, 342, 468
Eco130I CCWWGG 2 cut(s) 103, 402
Eco31I GGTCTC 2 cut(s) 123, 401
Eco47I GGWCC 1 cut(s) 327
EcoT14I CCWWGG 2 cut(s) 103, 402
ErhI CCWWGG 2 cut(s) 103, 402
FaeI CATG 3 cut(s) 93, 107, 125
FaqI GGGAC 1 cut(s) 313
FatI CATG 3 cut(s) 89, 103, 121
Fnu4HI GCNGC 4 cut(s) 30, 87, 303, 306
FokI GGATG 2 cut(s) 293, 443
Fsp4HI GCNGC 4 cut(s) 30, 87, 303, 306
FspI TGCGCA 2 cut(s) 155, 398
GlaI GCGC 2 cut(s) 155, 398
GluI GCNGC 4 cut(s) 30, 87, 303, 306
GsuI CTGGAG 1 cut(s) 486
HapII CCGG 1 cut(s) 225
HhaI GCGC 2 cut(s) 156, 399
Hin1II CATG 3 cut(s) 93, 107, 125
Hin6I GCGC 2 cut(s) 154, 397
HinP1I GCGC 2 cut(s) 154, 397
HpaII CCGG 1 cut(s) 225
Hpy166II GTNNAC 1 cut(s) 293
Hpy188III TCNNGA 1 cut(s) 122
Hpy8I GTNNAC 1 cut(s) 293
HpyCH4III ACNGT 1 cut(s) 79
HpyCH4IV ACGT 1 cut(s) 267
HpyCH4V TGCA 3 cut(s) 89, 431, 485
HpyF10VI GCNNNNNNNGC 3 cut(s) 26, 92, 461
HpyF3I CTNAG 1 cut(s) 435
HpySE526I ACGT 1 cut(s) 267
Hsp92II CATG 3 cut(s) 93, 107, 125
HspAI GCGC 2 cut(s) 154, 397
Kzo9I GATC 2 cut(s) 108, 496
LpnPI CCDG 7 cut(s) 180, 238, 301, 372, 450, 485, 489
Lsp1109I GCAGC 4 cut(s) 41, 73, 289, 292
LweI GCATC 2 cut(s) 140, 271
MaeII ACGT 1 cut(s) 267
MaeIII GTNAC 1 cut(s) 73
MalI GATC 2 cut(s) 110, 498
MboI GATC 2 cut(s) 108, 496
MboII GAAGA 6 cut(s) 55, 58, 202, 303, 329, 485
MluCI AATT 2 cut(s) 237, 420
MmeI TCCRAC 2 cut(s) 214, 359
MnlI CCTC 6 cut(s) 8, 227, 256, 319, 341, 469
MseI TTAA 3 cut(s) 51, 252, 514
MspA1I CMGCKG 1 cut(s) 302
MspI CCGG 1 cut(s) 225
MwoI GCNNNNNNNGC 3 cut(s) 26, 92, 461
NcoI CCATGG 1 cut(s) 103
NdeII GATC 2 cut(s) 108, 496
NlaIII CATG 3 cut(s) 93, 107, 125
NlaIV GGNNCC 1 cut(s) 329
NmuCI GTSAC 1 cut(s) 73
NsbI TGCGCA 2 cut(s) 155, 398
PagI TCATGA 1 cut(s) 121
PkrI GCNGC 4 cut(s) 31, 88, 304, 307
Psp1406I AACGTT 1 cut(s) 267
PspN4I GGNNCC 1 cut(s) 329
PspPI GGNCC 1 cut(s) 327
PstNI CAGNNNCTG 2 cut(s) 134, 305
PvuII CAGCTG 1 cut(s) 302
SaqAI TTAA 3 cut(s) 51, 252, 514
SatI GCNGC 4 cut(s) 30, 87, 303, 306
Sau3AI GATC 2 cut(s) 108, 496
Sau96I GGNCC 1 cut(s) 327
SetI ASST 7 cut(s) 88, 119, 248, 270, 304, 404, 466
SfaNI GCATC 2 cut(s) 140, 271
SinI GGWCC 1 cut(s) 327
Sse9I AATT 2 cut(s) 237, 420
StyI CCWWGG 2 cut(s) 103, 402
TaaI ACNGT 1 cut(s) 79
TaiI ACGT 1 cut(s) 270
TaqI TCGA 1 cut(s) 111
TasI AATT 2 cut(s) 237, 420
Tru1I TTAA 3 cut(s) 51, 252, 514
Tru9I TTAA 3 cut(s) 51, 252, 514
TseFI GTSAC 1 cut(s) 73
TseI GCWGC 4 cut(s) 29, 86, 302, 305
Tsp45I GTSAC 1 cut(s) 73
TspDTI ATGAA 4 cut(s) 58, 113, 138, 251
TspGWI ACGGA 1 cut(s) 270
VpaK11BI GGWCC 1 cut(s) 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.