Rh4DG216600

AWPM-19-like family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0014400
Physical Location & Seq
Forward (+)
41697031 .. 41698125
1095 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG216600.1

Sequence Viewer

Length: 519 bp
ATGGTTGCTGGAGGAGGGGCAAAATCAGCAGCCTATGTTCTCTTACTTGTTAATCTCGTTATCTTCTTCATTGTGACTGTCATAGCTGCATGGGCAATGAACCATGGGATCCAAAGGTCTCGTGAAGCAGCATCTGTTTTGTCCATACCATTGCGCATTTTTCCAATATACTTCCCAATGGGGAATATGGCAACCGGTTTCTTTGTGATCTTCTCCCTCATTGCCGGTGTTGTTGGAATTGCCACCTCCCTTACCGGACTTCATAACGTTTTTCAATGGGATGGCCCCAGTTTACACGCAGCTGCTGCCTCTTCTCTTGTATCATGGTCCCTCACTCTTCTTGCCATGGGACTGGCTTGTAAAGAGATTGAACTTGGTTGGACAACTGGGAACTTGCGTACTTTGGAGACCATGACCATAATTGTGAGCGCAACTCAATTGTTTTATACTTGTGCCATCCAAGCTGGAGTTGAAGTGGCTATTGCAGAACAAAGGGATCGGATTGCAGCAAGACGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AWPM-19

Protein Analysis

172

Amino Acids

18.37

Weight (kDa)

8.77

Isoelectric Point (pI)

26.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AWPM-19 PF05512 16 - 156 1.2e-58 AWPM-19-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014400)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G18970
fragaria_vesca FvH4_4g14182
malus_domestica MD13G1180300.v1.1 MD16G1181200.v1.1
prunus_persica Prupe.1G148600_v2.0.a1
pyrus_communis pycom13g15560 pycom16g15200
rosa_chinensis RchiOBHm_Chr4g0419021
rosa_laevigata RLG00000007832
rosa_multiflora Rmu_co8230677.1_g000001 Rmu_sc0005646.1_g000002
rosa_roxburghii Rroxscaffold_5G00362080
rosa_rugosa Rorug04G0156500
rosa_samantha Rh4AG218000 Rh4BG212200 Rh4DG216600
rosa_wichuraiana Rw4G018640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 155
AclI AACGTT 1 cut(s) 267
AclWI GGATC 3 cut(s) 103, 116, 504
AfaI GTAC 1 cut(s) 400
AgeI ACCGGT 1 cut(s) 194
AgsI TTSAA 3 cut(s) 275, 371, 473
AluBI AGCT 3 cut(s) 86, 302, 464
AluI AGCT 3 cut(s) 86, 302, 464
Alw26I GTCTC 2 cut(s) 123, 401
AlwI GGATC 3 cut(s) 103, 116, 504
AlwNI CAGNNNCTG 2 cut(s) 134, 305
AoxI GGCC 1 cut(s) 283
ApeKI GCWGC 7 cut(s) 29, 86, 128, 299, 302, 305, 506
AsiGI ACCGGT 1 cut(s) 194
AspLEI GCGC 2 cut(s) 156, 431
AspS9I GGNCC 2 cut(s) 284, 327
AvaII GGWCC 1 cut(s) 327
BamHI GGATCC 1 cut(s) 108
BauI CACGAG 1 cut(s) 120
BbvI GCAGC 6 cut(s) 41, 73, 140, 289, 292, 311
BccI CCATC 2 cut(s) 275, 464
BcoDI GTCTC 2 cut(s) 123, 401
BisI GCNGC 7 cut(s) 30, 87, 129, 300, 303, 306, 507
BlsI GCNGC 7 cut(s) 31, 88, 130, 301, 304, 307, 508
Bme18I GGWCC 1 cut(s) 327
BmgT120I GGNCC 2 cut(s) 284, 327
BmiI GGNNCC 3 cut(s) 110, 286, 329
BmrI ACTGGG 2 cut(s) 282, 396
BmsI GCATC 1 cut(s) 140
BmuI ACTGGG 2 cut(s) 282, 396
BplI GAGNNNNNCTC 2 cut(s) 418, 450
BpmI CTGGAG 2 cut(s) 30, 486
BsaI GGTCTC 2 cut(s) 123, 401
BsaJI CCNNGG 2 cut(s) 103, 345
BsaWI WCCGGW 2 cut(s) 194, 254
BsaXI ACNNNNNCTCC 2 cut(s) 459, 489
Bse118I RCCGGY 2 cut(s) 194, 224
Bse1I ACTGG 3 cut(s) 288, 357, 391
Bse3DI GCAATG 3 cut(s) 102, 149, 219
BseDI CCNNGG 2 cut(s) 103, 345
BseGI GGATG 2 cut(s) 286, 456
BseMI GCAATG 3 cut(s) 102, 149, 219
BseNI ACTGG 3 cut(s) 288, 357, 391
BseRI GAGGAG 1 cut(s) 27
BseXI GCAGC 6 cut(s) 41, 73, 140, 289, 292, 311
BshFI GGCC 1 cut(s) 285
BshTI ACCGGT 1 cut(s) 194
BsiSI CCGG 3 cut(s) 195, 225, 255
BslFI GGGAC 2 cut(s) 313, 363
BsmAI GTCTC 2 cut(s) 123, 401
BsmFI GGGAC 2 cut(s) 313, 363
BsnI GGCC 1 cut(s) 285
Bso31I GGTCTC 2 cut(s) 123, 401
Bsp143I GATC 3 cut(s) 108, 207, 496
Bsp19I CCATGG 2 cut(s) 103, 345
BspANI GGCC 1 cut(s) 285
BspLI GGNNCC 3 cut(s) 110, 286, 329
BspPI GGATC 3 cut(s) 103, 116, 504
BspTNI GGTCTC 2 cut(s) 123, 401
BsrDI GCAATG 3 cut(s) 102, 149, 219
BsrFI RCCGGY 2 cut(s) 194, 224
BsrI ACTGG 3 cut(s) 288, 357, 391
BssAI RCCGGY 2 cut(s) 194, 224
BssECI CCNNGG 2 cut(s) 103, 345
BssMI GATC 3 cut(s) 108, 207, 496
BssSI CACGAG 1 cut(s) 120
BssT1I CCWWGG 2 cut(s) 103, 345
Bst2BI CACGAG 1 cut(s) 120
Bst4CI ACNGT 1 cut(s) 79
Bst6I CTCTTC 2 cut(s) 316, 342
BstAPI GCANNNNNTGC 1 cut(s) 305
BstDSI CCRYGG 2 cut(s) 103, 345
BstF5I GGATG 2 cut(s) 286, 456
BstHHI GCGC 2 cut(s) 156, 431
BstKTI GATC 3 cut(s) 111, 210, 499
BstMAI GTCTC 2 cut(s) 123, 401
BstMBI GATC 3 cut(s) 108, 207, 496
BstMWI GCNNNNNNNGC 4 cut(s) 26, 92, 305, 461
BstV1I GCAGC 6 cut(s) 41, 73, 140, 289, 292, 311
BstX2I RGATCY 1 cut(s) 108
BstXI CCANNNNNNTGG 1 cut(s) 352
BstYI RGATCY 1 cut(s) 108
BsuRI GGCC 1 cut(s) 285
BtgI CCRYGG 2 cut(s) 103, 345
BtsCI GGATG 2 cut(s) 286, 456
CaiI CAGNNNCTG 2 cut(s) 134, 305
CfoI GCGC 2 cut(s) 156, 431
Cfr10I RCCGGY 2 cut(s) 194, 224
Cfr13I GGNCC 2 cut(s) 284, 327
Csp6I GTAC 1 cut(s) 399
CspAI ACCGGT 1 cut(s) 194
CviAII CATG 5 cut(s) 90, 104, 324, 346, 412
CviJI RGCY 7 cut(s) 32, 86, 285, 302, 356, 464, 479
CviKI_1 RGCY 7 cut(s) 32, 86, 285, 302, 356, 464, 479
CviQI GTAC 1 cut(s) 399
DpnI GATC 3 cut(s) 110, 209, 498
DpnII GATC 3 cut(s) 108, 207, 496
Eam1104I CTCTTC 2 cut(s) 316, 342
EarI CTCTTC 2 cut(s) 316, 342
Eco130I CCWWGG 2 cut(s) 103, 345
Eco31I GGTCTC 2 cut(s) 123, 401
Eco47I GGWCC 1 cut(s) 327
EcoT14I CCWWGG 2 cut(s) 103, 345
ErhI CCWWGG 2 cut(s) 103, 345
FaeI CATG 5 cut(s) 93, 107, 327, 349, 415
FaqI GGGAC 2 cut(s) 313, 363
FatI CATG 5 cut(s) 89, 103, 323, 345, 411
Fnu4HI GCNGC 7 cut(s) 30, 87, 129, 300, 303, 306, 507
FokI GGATG 2 cut(s) 293, 443
Fsp4HI GCNGC 7 cut(s) 30, 87, 129, 300, 303, 306, 507
FspI TGCGCA 1 cut(s) 155
GlaI GCGC 2 cut(s) 155, 430
GluI GCNGC 7 cut(s) 30, 87, 129, 300, 303, 306, 507
GsuI CTGGAG 2 cut(s) 30, 486
HaeIII GGCC 1 cut(s) 285
HapII CCGG 3 cut(s) 195, 225, 255
HhaI GCGC 2 cut(s) 156, 431
Hin1II CATG 5 cut(s) 93, 107, 327, 349, 415
Hin6I GCGC 2 cut(s) 154, 429
HinP1I GCGC 2 cut(s) 154, 429
HpaII CCGG 3 cut(s) 195, 225, 255
Hpy166II GTNNAC 1 cut(s) 293
Hpy188I TCNGA 1 cut(s) 501
Hpy188III TCNNGA 1 cut(s) 122
Hpy8I GTNNAC 1 cut(s) 293
HpyCH4III ACNGT 1 cut(s) 79
HpyCH4IV ACGT 2 cut(s) 267, 514
HpyCH4V TGCA 3 cut(s) 89, 485, 506
HpyF10VI GCNNNNNNNGC 4 cut(s) 26, 92, 305, 461
HpySE526I ACGT 2 cut(s) 267, 514
Hsp92II CATG 5 cut(s) 93, 107, 327, 349, 415
HspAI GCGC 2 cut(s) 154, 429
Kzo9I GATC 3 cut(s) 108, 207, 496
LpnPI CCDG 7 cut(s) 208, 238, 268, 301, 338, 372, 450
Lsp1109I GCAGC 6 cut(s) 41, 73, 140, 289, 292, 311
LweI GCATC 1 cut(s) 140
MaeII ACGT 2 cut(s) 267, 514
MaeIII GTNAC 1 cut(s) 73
MalI GATC 3 cut(s) 110, 209, 498
MboI GATC 3 cut(s) 108, 207, 496
MboII GAAGA 5 cut(s) 55, 58, 202, 303, 329
MfeI CAATTG 1 cut(s) 437
MflI RGATCY 1 cut(s) 108
MluCI AATT 3 cut(s) 237, 420, 437
MmeI TCCRAC 2 cut(s) 214, 359
MnlI CCTC 6 cut(s) 5, 8, 227, 256, 319, 341
MseI TTAA 2 cut(s) 51, 517
MslI CAYNNNNRTG 1 cut(s) 422
MspA1I CMGCKG 1 cut(s) 302
MspI CCGG 3 cut(s) 195, 225, 255
MunI CAATTG 1 cut(s) 437
MwoI GCNNNNNNNGC 4 cut(s) 26, 92, 305, 461
NcoI CCATGG 2 cut(s) 103, 345
NdeII GATC 3 cut(s) 108, 207, 496
NlaIII CATG 5 cut(s) 93, 107, 327, 349, 415
NlaIV GGNNCC 3 cut(s) 110, 286, 329
NmuCI GTSAC 1 cut(s) 73
NsbI TGCGCA 1 cut(s) 155
PinAI ACCGGT 1 cut(s) 194
PkrI GCNGC 7 cut(s) 31, 88, 130, 301, 304, 307, 508
Psp1406I AACGTT 1 cut(s) 267
PspN4I GGNNCC 3 cut(s) 110, 286, 329
PspPI GGNCC 2 cut(s) 284, 327
PstNI CAGNNNCTG 2 cut(s) 134, 305
PsuI RGATCY 1 cut(s) 108
PvuII CAGCTG 1 cut(s) 302
RsaI GTAC 1 cut(s) 400
RsaNI GTAC 1 cut(s) 399
RseI CAYNNNNRTG 1 cut(s) 422
SaqAI TTAA 2 cut(s) 51, 517
SatI GCNGC 7 cut(s) 30, 87, 129, 300, 303, 306, 507
Sau3AI GATC 3 cut(s) 108, 207, 496
Sau96I GGNCC 2 cut(s) 284, 327
SetI ASST 7 cut(s) 88, 119, 248, 270, 304, 466, 517
SfaNI GCATC 1 cut(s) 140
SinI GGWCC 1 cut(s) 327
SmiMI CAYNNNNRTG 1 cut(s) 422
Sse9I AATT 3 cut(s) 237, 420, 437
StyI CCWWGG 2 cut(s) 103, 345
TaaI ACNGT 1 cut(s) 79
TaiI ACGT 2 cut(s) 270, 517
TasI AATT 3 cut(s) 237, 420, 437
Tru1I TTAA 2 cut(s) 51, 517
Tru9I TTAA 2 cut(s) 51, 517
TseFI GTSAC 1 cut(s) 73
TseI GCWGC 7 cut(s) 29, 86, 128, 299, 302, 305, 506
Tsp45I GTSAC 1 cut(s) 73
TspDTI ATGAA 3 cut(s) 58, 113, 251
VpaK11BI GGWCC 1 cut(s) 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.