Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012211

Physical Location & Seq

Genomic Coordinates Forward (+)

6423153 .. 6426166

Gene Structure 3014 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G19140.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGTTGGGAATTTTCAGTGGAGCTATAGTATCGCCGCCGGAAGAGTTAGTGGCTGCCGGAAGCAGAACTCCGTCGCCGAAAACAACCGGATCAACTTTAGTAAACCGGTTCGTCGAGAAAAATCCATCCGCTGTTTCTGTACAAGTCGGCGACTATGTTCAGCTTGCTTACAGCCATCACAACGAGAGTCCTCTCCGGCCTAGATCATTTGGAGCTAAGGATGAAATATTCTGCTTGTTCCAAGGCTCACTTGACAACCTAGGAAGCTTGAAACAGCAGTACGGGCTTGCAAAAAACGCAAACGAGGTTCTCTTGGTCATCGAGGCTTATAAGACTCTCCGTGACAGAGCTCCTTACCCGGCTAACCACGTTGTTGCTCACCTAAGTGGCGATTTCGCCTTTGTGGTCTTTGATAAATCAACCTCCACTCTGTTTGTAGCCTCTGACCAAGTTGGCAAGGTTCCATTGTATTGGGGAATAACAGCTGATGGCTATGTGGCATTTGCTGATGATGTTGACTTACTAAAAGGTGCTTGTGGCAAGTCTCTTGCGTCTTTCCCTCAAGGCTGTTATTACTCGACGGCATTAGGTGGGCTTAGGAGCTTCGAGAACCCTAAGAACAAGATCACTGCAGTTCCTGCTAATGAGGGAGAAATTTGGGGAGCTACCTTCAAGGTGGAAGGAGCAACAGTTCTTGCAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3700

Protein Analysis

234

Amino Acids

25.01

Weight (kDa)

5.82

Isoelectric Point (pI)

32.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3700	PF12481	2 - 214	5.5e-85	Aluminium induced protein
GATase_6	PF13522	64 - 170	1.5e-10	Glutamine amidotransferase domain
GATase_7	PF13537	73 - 174	3.1e-11	Glutamine amidotransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19140 AT5G19140 AT5G19140
fragaria_vesca	FvH4_4g14740 FvH4_4g14740
malus_domestica	MD13G1185100.v1.1 MD16G1185700.v1.1
prunus_persica	Prupe.1G152400_v2.0.a1 Prupe.1G152400_v2.0.a1
pyrus_communis	pycom13g15970 pycom16g15550
rosa_chinensis	RchiOBHm_Chr4g0417861
rosa_laevigata	RLG00000007892
rosa_multiflora	Rmu_sc0004911.1_g000008
rosa_roxburghii	Rroxscaffold_5G00361280
rosa_rugosa	Rorug04G0149900
rosa_samantha	Rh4BG218800 Rh4DG210100
rosa_wichuraiana	Rw4G018000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	330
AciI	CCGC	2 cut(s)	35, 129
AclWI	GGATC	1 cut(s)	97
AcsI	RAATTY	2 cut(s)	9, 654
AfaI	GTAC	2 cut(s)	141, 281
AgeI	ACCGGT	1 cut(s)	105
AgsI	TTSAA	2 cut(s)	271, 673
AleI	CACNNNNGTG	1 cut(s)	384
AloI	GAACNNNNNNTCC	1 cut(s)	675
AluBI	AGCT	8 cut(s)	23, 163, 215, 267, 350, 485, 603, 665
AluI	AGCT	8 cut(s)	23, 163, 215, 267, 350, 485, 603, 665
Alw21I	GWGCWC	1 cut(s)	352
Alw26I	GTCTC	1 cut(s)	549
AlwI	GGATC	1 cut(s)	97
AlwNI	CAGNNNCTG	1 cut(s)	638
AoxI	GGCC	1 cut(s)	197
ApeKI	GCWGC	1 cut(s)	53
ApoI	RAATTY	2 cut(s)	9, 654
AsiGI	ACCGGT	1 cut(s)	105
AspA2I	CCTAGG	1 cut(s)	259
AsuC2I	CCSGG	1 cut(s)	359
AsuHPI	GGTGA	1 cut(s)	371
AvrII	CCTAGG	1 cut(s)	259
BanII	GRGCYC	1 cut(s)	352
Bbv12I	GWGCWC	1 cut(s)	352
BbvI	GCAGC	1 cut(s)	40
BccI	CCATC	3 cut(s)	133, 183, 482
BceAI	ACGGC	1 cut(s)	597
BcnI	CCSGG	1 cut(s)	359
BcoDI	GTCTC	1 cut(s)	549
BfaI	CTAG	2 cut(s)	201, 260
BfmI	CTRYAG	2 cut(s)	24, 630
BisI	GCNGC	2 cut(s)	35, 54
BlnI	CCTAGG	1 cut(s)	259
BlsI	GCNGC	2 cut(s)	36, 55
Bme1390I	CCNGG	1 cut(s)	359
BmiI	GGNNCC	1 cut(s)	462
BmrFI	CCNGG	1 cut(s)	359
Bpu10I	CCTNAGC	2 cut(s)	216, 596
BpuEI	CTTGAG	1 cut(s)	546
BpuMI	CCSGG	1 cut(s)	359
BsaJI	CCNNGG	2 cut(s)	241, 259
BsaWI	WCCGGW	2 cut(s)	86, 105
BsaXI	ACNNNNNCTCC	4 cut(s)	12, 42, 675, 705
Bse118I	RCCGGY	1 cut(s)	105
BseDI	CCNNGG	2 cut(s)	241, 259
BseGI	GGATG	2 cut(s)	125, 226
BseXI	GCAGC	1 cut(s)	40
BshFI	GGCC	1 cut(s)	199
BshTI	ACCGGT	1 cut(s)	105
BsiHKAI	GWGCWC	1 cut(s)	352
BsiSI	CCGG	6 cut(s)	38, 57, 87, 106, 196, 359
BsmAI	GTCTC	1 cut(s)	549
BsnI	GGCC	1 cut(s)	199
Bsp1286I	GDGCHC	1 cut(s)	352
Bsp1407I	TGTACA	1 cut(s)	139
Bsp143I	GATC	3 cut(s)	89, 203, 624
BspACI	CCGC	2 cut(s)	35, 129
BspANI	GGCC	1 cut(s)	199
BspLI	GGNNCC	1 cut(s)	462
BspMAI	CTGCAG	1 cut(s)	634
BspPI	GGATC	1 cut(s)	97
BsrFI	RCCGGY	1 cut(s)	105
BsrGI	TGTACA	1 cut(s)	139
BssAI	RCCGGY	1 cut(s)	105
BssECI	CCNNGG	2 cut(s)	241, 259
BssMI	GATC	3 cut(s)	89, 203, 624
BssT1I	CCWWGG	2 cut(s)	241, 259
Bst4CI	ACNGT	1 cut(s)	691
Bst6I	CTCTTC	1 cut(s)	36
BstAPI	GCANNNNNTGC	1 cut(s)	638
BstAUI	TGTACA	1 cut(s)	139
BstC8I	GCNNGC	2 cut(s)	165, 288
BstDEI	CTNAG	4 cut(s)	216, 383, 596, 615
BstF5I	GGATG	2 cut(s)	125, 226
BstKTI	GATC	3 cut(s)	92, 206, 627
BstMAI	GTCTC	1 cut(s)	549
BstMBI	GATC	3 cut(s)	89, 203, 624
BstMWI	GCNNNNNNNGC	3 cut(s)	283, 296, 638
BstSCI	CCNGG	1 cut(s)	357
BstSFI	CTRYAG	2 cut(s)	24, 630
BstV1I	GCAGC	1 cut(s)	40
BstXI	CCANNNNNNTGG	1 cut(s)	471
BsuRI	GGCC	1 cut(s)	199
BtsCI	GGATG	2 cut(s)	125, 226
BtsI	GCAGTG	1 cut(s)	627
BtsIMutI	CAGTG	2 cut(s)	22, 627
Cac8I	GCNNGC	2 cut(s)	165, 288
CaiI	CAGNNNCTG	1 cut(s)	638
Cfr10I	RCCGGY	1 cut(s)	105
CseI	GACGC	1 cut(s)	540
Csp6I	GTAC	2 cut(s)	140, 280
CspAI	ACCGGT	1 cut(s)	105
CspCI	CAANNNNNGTGG	2 cut(s)	415, 450
CviQI	GTAC	2 cut(s)	140, 280
DdeI	CTNAG	4 cut(s)	216, 383, 596, 615
DpnI	GATC	3 cut(s)	91, 205, 626
DpnII	GATC	3 cut(s)	89, 203, 624
Eam1104I	CTCTTC	1 cut(s)	36
EarI	CTCTTC	1 cut(s)	36
Ecl136II	GAGCTC	1 cut(s)	350
Eco130I	CCWWGG	2 cut(s)	241, 259
Eco24I	GRGCYC	1 cut(s)	352
Eco53kI	GAGCTC	1 cut(s)	350
EcoICRI	GAGCTC	1 cut(s)	350
EcoT14I	CCWWGG	2 cut(s)	241, 259
EcoT38I	GRGCYC	1 cut(s)	352
ErhI	CCWWGG	2 cut(s)	241, 259
FaiI	YATR	4 cut(s)	26, 156, 330, 495
FalI	AAGNNNNNCTT	2 cut(s)	234, 266
Fnu4HI	GCNGC	2 cut(s)	35, 54
FokI	GGATG	2 cut(s)	112, 233
FriOI	GRGCYC	1 cut(s)	352
Fsp4HI	GCNGC	2 cut(s)	35, 54
FspBI	CTAG	2 cut(s)	201, 260
GluI	GCNGC	2 cut(s)	35, 54
HaeIII	GGCC	1 cut(s)	199
HapII	CCGG	6 cut(s)	38, 57, 87, 106, 196, 359
HgaI	GACGC	1 cut(s)	540
HincII	GTYRAC	1 cut(s)	517
HindII	GTYRAC	1 cut(s)	517
HindIII	AAGCTT	1 cut(s)	265
HinfI	GANTC	2 cut(s)	187, 334
HpaII	CCGG	6 cut(s)	38, 57, 87, 106, 196, 359
HphI	GGTGA	1 cut(s)	371
Hpy166II	GTNNAC	2 cut(s)	103, 517
Hpy188I	TCNGA	1 cut(s)	445
Hpy188III	TCNNGA	2 cut(s)	115, 607
Hpy8I	GTNNAC	2 cut(s)	103, 517
Hpy99I	CGWCG	3 cut(s)	76, 116, 583
HpyAV	CCTTC	2 cut(s)	674, 679
HpyCH4III	ACNGT	1 cut(s)	691
HpyCH4IV	ACGT	1 cut(s)	369
HpyCH4V	TGCA	3 cut(s)	290, 632, 698
HpyF10VI	GCNNNNNNNGC	3 cut(s)	283, 296, 638
HpyF3I	CTNAG	4 cut(s)	216, 383, 596, 615
HpySE526I	ACGT	1 cut(s)	369
Kzo9I	GATC	3 cut(s)	89, 203, 624
LmnI	GCTCC	6 cut(s)	20, 212, 355, 600, 662, 683
LpnPI	CCDG	7 cut(s)	51, 70, 100, 119, 209, 372, 651
Lsp1109I	GCAGC	1 cut(s)	40
MaeI	CTAG	2 cut(s)	201, 260
MaeII	ACGT	1 cut(s)	369
MaeIII	GTNAC	1 cut(s)	341
MalI	GATC	3 cut(s)	91, 205, 626
MboI	GATC	3 cut(s)	89, 203, 624
MboII	GAAGA	1 cut(s)	53
MhlI	GDGCHC	1 cut(s)	352
MluCI	AATT	2 cut(s)	9, 654
MlyI	GAGTC	2 cut(s)	196, 328
MnlI	CCTC	7 cut(s)	201, 298, 316, 433, 451, 570, 640
MslI	CAYNNNNRTG	1 cut(s)	384
MspA1I	CMGCKG	2 cut(s)	131, 485
MspI	CCGG	6 cut(s)	38, 57, 87, 106, 196, 359
MspR9I	CCNGG	1 cut(s)	359
MwoI	GCNNNNNNNGC	3 cut(s)	283, 296, 638
NciI	CCSGG	1 cut(s)	359
NdeII	GATC	3 cut(s)	89, 203, 624
NlaIV	GGNNCC	1 cut(s)	462
NmuCI	GTSAC	1 cut(s)	341
OliI	CACNNNNGTG	1 cut(s)	384
PinAI	ACCGGT	1 cut(s)	105
PkrI	GCNGC	2 cut(s)	36, 55
PleI	GAGTC	2 cut(s)	195, 328
PpsI	GAGTC	2 cut(s)	195, 328
PsiI	TTATAA	1 cut(s)	330
Psp124BI	GAGCTC	1 cut(s)	352
PspN4I	GGNNCC	1 cut(s)	462
PstI	CTGCAG	1 cut(s)	634
PstNI	CAGNNNCTG	1 cut(s)	638
PvuII	CAGCTG	1 cut(s)	485
RsaI	GTAC	2 cut(s)	141, 281
RsaNI	GTAC	2 cut(s)	140, 280
RseI	CAYNNNNRTG	1 cut(s)	384
SacI	GAGCTC	1 cut(s)	352
SatI	GCNGC	2 cut(s)	35, 54
Sau3AI	GATC	3 cut(s)	89, 203, 624
SchI	GAGTC	2 cut(s)	196, 328
ScrFI	CCNGG	1 cut(s)	359
SduI	GDGCHC	1 cut(s)	352
SfcI	CTRYAG	2 cut(s)	24, 630
SmiMI	CAYNNNNRTG	1 cut(s)	384
SmlI	CTYRAG	1 cut(s)	561
SmoI	CTYRAG	1 cut(s)	561
Sse9I	AATT	2 cut(s)	9, 654
SsiI	CCGC	2 cut(s)	35, 129
SspI	AATATT	1 cut(s)	228
SspMI	CTAG	2 cut(s)	201, 260
SstI	GAGCTC	1 cut(s)	352
StyD4I	CCNGG	1 cut(s)	357
StyI	CCWWGG	2 cut(s)	241, 259
TaaI	ACNGT	1 cut(s)	691
TaiI	ACGT	1 cut(s)	372
TaqI	TCGA	4 cut(s)	114, 321, 578, 606
TasI	AATT	2 cut(s)	9, 654
TatI	WGTACW	1 cut(s)	139
TauI	GCSGC	1 cut(s)	37
TscAI	CASTG	2 cut(s)	22, 634
TseFI	GTSAC	1 cut(s)	341
TseI	GCWGC	1 cut(s)	53
Tsp45I	GTSAC	1 cut(s)	341
TspDTI	ATGAA	1 cut(s)	237
TspGWI	ACGGA	2 cut(s)	60, 329
TspRI	CASTG	2 cut(s)	22, 634
XapI	RAATTY	2 cut(s)	9, 654
XmaJI	CCTAGG	1 cut(s)	259
XspI	CTAG	2 cut(s)	201, 260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.