Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0012211

Physical Location & Seq

Genomic Coordinates Forward (+)

16021682 .. 16024784

Gene Structure 3103 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1185700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGACGCCGCCGTCTCCGTACAAGTCGGCGACGACGCTCAGCTGGCCTACAGTCACAGCAACGAGTCTGCGTTACAGCCGAGTGAAGGATGAGATATTCTGCTTGTTTGAGGGAGCACTTGACAACTTGGGAAGTTTGAGGCAGCAATACGGACTTGCCAAGTCGGCAAATGAAGTGATTTTGGTGATCGAGGCTTACAAGGCCCTTCGTGATCGGGCTCCTTACCCGCCAAACCATGTCGTTGGCCACCTCAGTGGAAATTTTGCTTTCATAGTATTTGACAAGTCCACCTCAACTGTGTTTGTGGCGTCTGACCAATTTGGCAAGATTCCGCTCTCTTGGGGAATTACTGCTGATGGATATGTGGCCTTTGCTGATGATGCAGAACTGCTCAAGGGTGCTTGTGGCAAGTCACTTGCTTCTTTCCCTCAAGGATGTTTCTACTCCACGTCTGTTGGAGGACTGAGAAGCTATGAGAATCCTAAAAACAAGATCACAGCTGTGCCTGCTACTGATGAAGAAATCTGGGGTGCAACATTTAAGGTGGAAGGGCCAGCAGTTCTTGCAGCCACAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3700

Protein Analysis

193

Amino Acids

20.67

Weight (kDa)

6.72

Isoelectric Point (pI)

31.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3700	PF12481	21 - 182	2.3e-75	Aluminium induced protein
GATase_6	PF13522	29 - 126	1.2e-09	Glutamine amidotransferase domain
GATase_7	PF13537	30 - 129	5.1e-10	Glutamine amidotransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19140 AT5G19140 AT5G19140
fragaria_vesca	FvH4_4g14740 FvH4_4g14740
malus_domestica	MD13G1185100.v1.1 MD16G1185700.v1.1
prunus_persica	Prupe.1G152400_v2.0.a1 Prupe.1G152400_v2.0.a1
pyrus_communis	pycom13g15970 pycom16g15550
rosa_chinensis	RchiOBHm_Chr4g0417861
rosa_laevigata	RLG00000007892
rosa_multiflora	Rmu_sc0004911.1_g000008
rosa_roxburghii	Rroxscaffold_5G00361280
rosa_rugosa	Rorug04G0149900
rosa_samantha	Rh4BG218800 Rh4DG210100
rosa_wichuraiana	Rw4G018000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	10
AccBSI	CCGCTC	1 cut(s)	334
AciI	CCGC	3 cut(s)	8, 227, 332
AcoI	YGGCCR	1 cut(s)	244
AcsI	RAATTY	1 cut(s)	259
AcyI	GRCGYC	2 cut(s)	5, 308
AfaI	GTAC	1 cut(s)	20
AfiI	CCNNNNNNNGG	1 cut(s)	85
AjiI	CACGTC	1 cut(s)	450
AleI	CACNNNNGTG	2 cut(s)	252, 500
AluBI	AGCT	3 cut(s)	42, 471, 500
AluI	AGCT	3 cut(s)	42, 471, 500
Alw21I	GWGCWC	1 cut(s)	118
Alw26I	GTCTC	1 cut(s)	18
AoxI	GGCC	5 cut(s)	44, 201, 244, 366, 551
ApeKI	GCWGC	2 cut(s)	142, 566
ApoI	RAATTY	1 cut(s)	259
AspS9I	GGNCC	2 cut(s)	202, 551
AsuHPI	GGTGA	1 cut(s)	196
BalI	TGGCCA	1 cut(s)	246
BanII	GRGCYC	1 cut(s)	220
Bbv12I	GWGCWC	1 cut(s)	118
BbvI	GCAGC	1 cut(s)	154
BccI	CCATC	1 cut(s)	350
BcoDI	GTCTC	1 cut(s)	18
BfmI	CTRYAG	1 cut(s)	48
BglI	GCCNNNNNGGC	1 cut(s)	164
BisI	GCNGC	3 cut(s)	8, 143, 567
BlpI	GCTNAGC	1 cut(s)	38
BlsI	GCNGC	3 cut(s)	9, 144, 568
BmgBI	CACGTC	1 cut(s)	450
BmgT120I	GGNCC	2 cut(s)	202, 551
BmiI	GGNNCC	1 cut(s)	219
BmsI	GCATC	1 cut(s)	370
Bpu1102I	GCTNAGC	1 cut(s)	38
BpuEI	CTTGAG	2 cut(s)	377, 414
BsaHI	GRCGYC	2 cut(s)	5, 308
Bsc4I	CCNNNNNNNGG	1 cut(s)	85
BseGI	GGATG	2 cut(s)	94, 440
BseLI	CCNNNNNNNGG	1 cut(s)	85
BseMII	CTCAG	3 cut(s)	52, 265, 455
BseXI	GCAGC	1 cut(s)	154
BshFI	GGCC	5 cut(s)	46, 203, 246, 368, 553
BsiHKAI	GWGCWC	1 cut(s)	118
BslI	CCNNNNNNNGG	1 cut(s)	85
BsmAI	GTCTC	1 cut(s)	18
BsmBI	CGTCTC	1 cut(s)	18
BsnI	GGCC	5 cut(s)	46, 203, 246, 368, 553
Bsp1286I	GDGCHC	2 cut(s)	118, 220
Bsp143I	GATC	3 cut(s)	186, 211, 492
Bsp1720I	GCTNAGC	1 cut(s)	38
BspACI	CCGC	3 cut(s)	8, 227, 332
BspANI	GGCC	5 cut(s)	46, 203, 246, 368, 553
BspCNI	CTCAG	3 cut(s)	51, 264, 456
BspLI	GGNNCC	1 cut(s)	219
BsrBI	CCGCTC	1 cut(s)	334
BssMI	GATC	3 cut(s)	186, 211, 492
BssNI	GRCGYC	2 cut(s)	5, 308
Bst4CI	ACNGT	2 cut(s)	52, 298
BstACI	GRCGYC	2 cut(s)	5, 308
BstAPI	GCANNNNNTGC	1 cut(s)	563
BstC8I	GCNNGC	3 cut(s)	44, 507, 555
BstDEI	CTNAG	3 cut(s)	38, 251, 464
BstF5I	GGATG	2 cut(s)	94, 440
BstKTI	GATC	3 cut(s)	189, 214, 495
BstMAI	GTCTC	1 cut(s)	18
BstMBI	GATC	3 cut(s)	186, 211, 492
BstMWI	GCNNNNNNNGC	6 cut(s)	43, 164, 200, 380, 506, 563
BstSFI	CTRYAG	1 cut(s)	48
BstV1I	GCAGC	1 cut(s)	154
BstXI	CCANNNNNNTGG	2 cut(s)	242, 254
BsuRI	GGCC	5 cut(s)	46, 203, 246, 368, 553
BtrI	CACGTC	1 cut(s)	450
BtsCI	GGATG	2 cut(s)	94, 440
BtsIMutI	CAGTG	1 cut(s)	259
Cac8I	GCNNGC	3 cut(s)	44, 507, 555
Cfr13I	GGNCC	2 cut(s)	202, 551
CseI	GACGC	3 cut(s)	13, 43, 297
Csp6I	GTAC	1 cut(s)	19
CspCI	CAANNNNNGTGG	2 cut(s)	436, 471
CviAII	CATG	1 cut(s)	236
CviQI	GTAC	1 cut(s)	19
DdeI	CTNAG	3 cut(s)	38, 251, 464
DpnI	GATC	3 cut(s)	188, 213, 494
DpnII	GATC	3 cut(s)	186, 211, 492
DrdI	GACNNNNNNGTC	1 cut(s)	10
DseDI	GACNNNNNNGTC	1 cut(s)	10
EaeI	YGGCCR	1 cut(s)	244
Eco24I	GRGCYC	1 cut(s)	220
EcoO109I	RGGNCCY	1 cut(s)	202
EcoT38I	GRGCYC	1 cut(s)	220
Esp3I	CGTCTC	1 cut(s)	18
FaeI	CATG	1 cut(s)	239
FaiI	YATR	4 cut(s)	237, 272, 363, 474
FatI	CATG	1 cut(s)	235
FauI	CCCGC	1 cut(s)	234
Fnu4HI	GCNGC	3 cut(s)	8, 143, 567
FokI	GGATG	2 cut(s)	101, 447
FriOI	GRGCYC	1 cut(s)	220
Fsp4HI	GCNGC	3 cut(s)	8, 143, 567
GluI	GCNGC	3 cut(s)	8, 143, 567
HaeIII	GGCC	5 cut(s)	46, 203, 246, 368, 553
HgaI	GACGC	3 cut(s)	13, 43, 297
Hin1I	GRCGYC	2 cut(s)	5, 308
Hin1II	CATG	1 cut(s)	239
HinfI	GANTC	3 cut(s)	64, 328, 478
HphI	GGTGA	1 cut(s)	196
Hpy166II	GTNNAC	1 cut(s)	288
Hpy188I	TCNGA	1 cut(s)	313
Hpy188III	TCNNGA	1 cut(s)	209
Hpy8I	GTNNAC	1 cut(s)	288
Hpy99I	CGWCG	2 cut(s)	34, 37
HpyAV	CCTTC	3 cut(s)	79, 215, 542
HpyCH4III	ACNGT	2 cut(s)	52, 298
HpyCH4IV	ACGT	1 cut(s)	449
HpyCH4V	TGCA	3 cut(s)	383, 533, 566
HpyF10VI	GCNNNNNNNGC	6 cut(s)	43, 164, 200, 380, 506, 563
HpyF3I	CTNAG	3 cut(s)	38, 251, 464
HpySE526I	ACGT	1 cut(s)	449
Hsp92I	GRCGYC	2 cut(s)	5, 308
Hsp92II	CATG	1 cut(s)	239
Kzo9I	GATC	3 cut(s)	186, 211, 492
LmnI	GCTCC	2 cut(s)	113, 223
LpnPI	CCDG	4 cut(s)	28, 511, 519, 567
Lsp1109I	GCAGC	1 cut(s)	154
LweI	GCATC	1 cut(s)	370
MaeII	ACGT	1 cut(s)	449
MaeIII	GTNAC	3 cut(s)	52, 71, 411
MalI	GATC	3 cut(s)	188, 213, 494
MbiI	CCGCTC	1 cut(s)	334
MboI	GATC	3 cut(s)	186, 211, 492
MboII	GAAGA	1 cut(s)	530
MhlI	GDGCHC	2 cut(s)	118, 220
MlsI	TGGCCA	1 cut(s)	246
MluCI	AATT	3 cut(s)	259, 317, 345
MluNI	TGGCCA	1 cut(s)	246
MlyI	GAGTC	1 cut(s)	73
MmeI	TCCRAC	1 cut(s)	436
MnlI	CCTC	7 cut(s)	103, 132, 184, 260, 301, 438, 452
Mox20I	TGGCCA	1 cut(s)	246
MscI	TGGCCA	1 cut(s)	246
MseI	TTAA	1 cut(s)	540
MslI	CAYNNNNRTG	2 cut(s)	252, 500
Msp20I	TGGCCA	1 cut(s)	246
MspA1I	CMGCKG	2 cut(s)	42, 500
MwoI	GCNNNNNNNGC	6 cut(s)	43, 164, 200, 380, 506, 563
NdeII	GATC	3 cut(s)	186, 211, 492
NlaIII	CATG	1 cut(s)	239
NlaIV	GGNNCC	1 cut(s)	219
NmeAIII	GCCGAG	1 cut(s)	104
NmuCI	GTSAC	2 cut(s)	52, 411
OliI	CACNNNNGTG	2 cut(s)	252, 500
PfeI	GAWTC	2 cut(s)	328, 478
PkrI	GCNGC	3 cut(s)	9, 144, 568
PleI	GAGTC	1 cut(s)	72
PpsI	GAGTC	1 cut(s)	72
PspN4I	GGNNCC	1 cut(s)	219
PspPI	GGNCC	2 cut(s)	202, 551
PvuII	CAGCTG	2 cut(s)	42, 500
RsaI	GTAC	1 cut(s)	20
RsaNI	GTAC	1 cut(s)	19
RseI	CAYNNNNRTG	2 cut(s)	252, 500
SaqAI	TTAA	1 cut(s)	540
SatI	GCNGC	3 cut(s)	8, 143, 567
Sau3AI	GATC	3 cut(s)	186, 211, 492
Sau96I	GGNCC	2 cut(s)	202, 551
SchI	GAGTC	1 cut(s)	73
SduI	GDGCHC	2 cut(s)	118, 220
SetI	ASST	7 cut(s)	44, 252, 293, 452, 473, 502, 546
SfaNI	GCATC	1 cut(s)	370
SfcI	CTRYAG	1 cut(s)	48
SmiMI	CAYNNNNRTG	2 cut(s)	252, 500
SmlI	CTYRAG	2 cut(s)	392, 429
SmoI	CTYRAG	2 cut(s)	392, 429
Sse9I	AATT	3 cut(s)	259, 317, 345
SsiI	CCGC	3 cut(s)	8, 227, 332
TaaI	ACNGT	2 cut(s)	52, 298
TaiI	ACGT	1 cut(s)	452
TaqI	TCGA	1 cut(s)	189
TasI	AATT	3 cut(s)	259, 317, 345
TauI	GCSGC	1 cut(s)	10
TfiI	GAWTC	2 cut(s)	328, 478
Tru1I	TTAA	1 cut(s)	540
Tru9I	TTAA	1 cut(s)	540
TscAI	CASTG	1 cut(s)	259
TseFI	GTSAC	2 cut(s)	52, 411
TseI	GCWGC	2 cut(s)	142, 566
Tsp45I	GTSAC	2 cut(s)	52, 411
TspDTI	ATGAA	3 cut(s)	186, 259, 531
TspGWI	ACGGA	2 cut(s)	6, 165
TspRI	CASTG	1 cut(s)	259
XapI	RAATTY	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.