Rorug04G0149900

Stem-specific protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0005564
Physical Location & Seq
Reverse (-)
26329389 .. 26336259
6871 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0149900.1

Sequence Viewer

Length: 939 bp
ATGGAAAAGGAGAAGGAATTCTCAAGTCAAGTTGCAGAGTTGGAGGAAGCAATAAACGTGTTGGATTCATCCCTCTCTCTTATCAAATGGCGACTCAAGTATTCAAGCAGACGTCGACTTGAGATAGATATTCTGGCCTTGTGTACTGGAATGAGGCCAGTGATAATGGTAGACTATGGTGGAAAGATGCCCGAACTGCAGGAGAGGCTCTGCAATCTTTTAAAACTTTGTCGAAAGAGCTCAACCATTTTTGAGCAGCTGAGAGTAATGGTTATAGAAGAAATGATATATTTGGTGCACATTAGTGAACTTGCTGATTATGTTAGGTCAAGCTTGAACTCTGAAGCAAAGCTTCTCTTTGTGGACCTTGAACATGATCCTCCAAAGATGATAAAACAAGCGGAGAAACACCAACTAGGTGTGCAGCTTATATCAATTCAGAAGTTGTTCTCTTTAAATTTTCCTGCTGGTGGAATGAAAGATGCCACATCGTCATCTCATAGTATAGATATGGTTGATTCTAAACCTGCCAGAAATGAACTGATATCTTCTCACTCCTCCGAGATTATTGATTTCAGTACCTGCATGCAAGATACTCAGGTCACCTTGCCAACATTAAATGGATGGCTTCTTGGTTATCCAGTGGTGTACTTGTTCAGCAAGGAGCATGTAGCTGATGCTGTTTATAATCTTTCTATGAAGTATCTTCATATTTATACAATATCAGTCTGCAGGAATGGGACCCCCAATAAACAATCTGAGCTAGAAGAACTCTTGAGTTTCTCGGTGCCTTACGGTTTAAGCATAAGAGGGAGCAAAGAAGAATGGGCCGAGGCATCGTTGGCTCATCTGCAGGAGAAGTGGGAAAGATGCAAGAATGCTTGGAGGTCTTTGCAGTTGGAGGTTAGTGAATTAAATCCACAGGCCATTGTGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3700

Protein Analysis

312

Amino Acids

35.59

Weight (kDa)

5.7

Isoelectric Point (pI)

50.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4504 PF14953 24 - 312 7.5e-87 Domain of unknown function (DUF4504)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 687
AatII GACGTC 1 cut(s) 115
Acc36I ACCTGC 2 cut(s) 535, 590
AccB1I GGYRCC 1 cut(s) 787
AccI GTMKAC 2 cut(s) 115, 171
AciI CCGC 1 cut(s) 401
AclWI GGATC 1 cut(s) 371
AcsI RAATTY 2 cut(s) 17, 457
AcuI CTGAAG 1 cut(s) 363
AcyI GRCGYC 1 cut(s) 112
AfaI GTAC 3 cut(s) 145, 580, 650
AfiI CCNNNNNNNGG 1 cut(s) 470
AflIII ACRYGT 1 cut(s) 57
AgsI TTSAA 3 cut(s) 105, 337, 371
AleI CACNNNNGTG 1 cut(s) 303
AluBI AGCT 7 cut(s) 240, 259, 333, 352, 427, 674, 763
AluI AGCT 7 cut(s) 240, 259, 333, 352, 427, 674, 763
Alw21I GWGCWC 2 cut(s) 242, 300
Alw44I GTGCAC 1 cut(s) 296
AlwI GGATC 1 cut(s) 371
AlwNI CAGNNNCTG 1 cut(s) 582
AoxI GGCC 4 cut(s) 135, 155, 828, 924
ApaLI GTGCAC 1 cut(s) 296
ApeKI GCWGC 2 cut(s) 256, 424
ApoI RAATTY 2 cut(s) 17, 457
Asp700I GAANNNNTTC 2 cut(s) 17, 446
AspS9I GGNCC 3 cut(s) 364, 741, 828
AsuHPI GGTGA 1 cut(s) 595
AvaII GGWCC 2 cut(s) 364, 741
BaeGI GKGCMC 1 cut(s) 300
BaeI ACNNNNGTAYC 2 cut(s) 585, 618
BanI GGYRCC 1 cut(s) 787
BanII GRGCYC 1 cut(s) 242
Bbv12I GWGCWC 2 cut(s) 242, 300
BbvI GCAGC 2 cut(s) 268, 436
BccI CCATC 1 cut(s) 618
BfaI CTAG 2 cut(s) 416, 764
BfmI CTRYAG 3 cut(s) 197, 730, 851
BfuAI ACCTGC 2 cut(s) 535, 590
BisI GCNGC 2 cut(s) 257, 425
BlsI GCNGC 2 cut(s) 258, 426
Bme18I GGWCC 2 cut(s) 364, 741
BmgT120I GGNCC 3 cut(s) 364, 741, 828
BmiI GGNNCC 3 cut(s) 742, 743, 789
BmsI GCATC 5 cut(s) 177, 472, 667, 845, 860
BpuEI CTTGAG 4 cut(s) 7, 80, 140, 796
BsaHI GRCGYC 1 cut(s) 112
BsaJI CCNNGG 1 cut(s) 831
Bsc4I CCNNNNNNNGG 1 cut(s) 470
Bse1I ACTGG 3 cut(s) 151, 158, 641
BseDI CCNNGG 1 cut(s) 831
BseGI GGATG 2 cut(s) 68, 629
BseLI CCNNNNNNNGG 1 cut(s) 470
BseMII CTCAG 3 cut(s) 251, 611, 750
BseNI ACTGG 3 cut(s) 151, 158, 641
BseRI GAGGAG 1 cut(s) 547
BseSI GKGCMC 1 cut(s) 300
BseXI GCAGC 2 cut(s) 268, 436
BsgI GTGCAG 1 cut(s) 443
BshFI GGCC 4 cut(s) 137, 157, 830, 926
BshNI GGYRCC 1 cut(s) 787
BsiHKAI GWGCWC 2 cut(s) 242, 300
BslFI GGGAC 1 cut(s) 754
BslI CCNNNNNNNGG 1 cut(s) 470
BsmFI GGGAC 1 cut(s) 754
BsmI GAATGC 1 cut(s) 883
BsnI GGCC 4 cut(s) 137, 157, 830, 926
Bsp1286I GDGCHC 2 cut(s) 242, 300
Bsp143I GATC 1 cut(s) 376
BspACI CCGC 1 cut(s) 401
BspANI GGCC 4 cut(s) 137, 157, 830, 926
BspCNI CTCAG 3 cut(s) 252, 610, 751
BspLI GGNNCC 3 cut(s) 742, 743, 789
BspMAI CTGCAG 3 cut(s) 201, 734, 855
BspMI ACCTGC 2 cut(s) 535, 590
BspPI GGATC 1 cut(s) 371
BspT107I GGYRCC 1 cut(s) 787
BsrI ACTGG 3 cut(s) 151, 158, 641
BssECI CCNNGG 1 cut(s) 831
BssMI GATC 1 cut(s) 376
BssNI GRCGYC 1 cut(s) 112
Bst4CI ACNGT 1 cut(s) 797
BstACI GRCGYC 1 cut(s) 112
BstC8I GCNNGC 1 cut(s) 587
BstDEI CTNAG 3 cut(s) 260, 597, 759
BstEII GGTNACC 1 cut(s) 601
BstF5I GGATG 2 cut(s) 68, 629
BstKTI GATC 1 cut(s) 379
BstMBI GATC 1 cut(s) 376
BstMWI GCNNNNNNNGC 3 cut(s) 196, 205, 842
BstNSI RCATGY 2 cut(s) 589, 671
BstPI GGTNACC 1 cut(s) 601
BstSFI CTRYAG 3 cut(s) 197, 730, 851
BstSLI GKGCMC 1 cut(s) 300
BstV1I GCAGC 2 cut(s) 268, 436
BsuRI GGCC 4 cut(s) 137, 157, 830, 926
BtsCI GGATG 2 cut(s) 68, 629
BtsIMutI CAGTG 2 cut(s) 165, 648
BveI ACCTGC 2 cut(s) 535, 590
Cac8I GCNNGC 1 cut(s) 587
CaiI CAGNNNCTG 1 cut(s) 582
Cfr13I GGNCC 3 cut(s) 364, 741, 828
Csp6I GTAC 3 cut(s) 144, 579, 649
CviAII CATG 3 cut(s) 374, 586, 668
CviQI GTAC 3 cut(s) 144, 579, 649
DdeI CTNAG 3 cut(s) 260, 597, 759
DpnI GATC 1 cut(s) 378
DpnII GATC 1 cut(s) 376
DraI TTTAAA 2 cut(s) 222, 456
Ecl136II GAGCTC 1 cut(s) 240
Eco24I GRGCYC 1 cut(s) 242
Eco32I GATATC 1 cut(s) 546
Eco47I GGWCC 2 cut(s) 364, 741
Eco53kI GAGCTC 1 cut(s) 240
Eco57I CTGAAG 1 cut(s) 363
Eco91I GGTNACC 1 cut(s) 601
EcoICRI GAGCTC 1 cut(s) 240
EcoO109I RGGNCCY 1 cut(s) 741
EcoO65I GGTNACC 1 cut(s) 601
EcoRI GAATTC 1 cut(s) 17
EcoRV GATATC 1 cut(s) 546
EcoT38I GRGCYC 1 cut(s) 242
FaeI CATG 3 cut(s) 377, 589, 671
FalI AAGNNNNNCTT 4 cut(s) 336, 368, 341, 373
FaqI GGGAC 1 cut(s) 754
FatI CATG 3 cut(s) 373, 585, 667
FblI GTMKAC 2 cut(s) 115, 171
Fnu4HI GCNGC 2 cut(s) 257, 425
FokI GGATG 2 cut(s) 55, 636
FriOI GRGCYC 1 cut(s) 242
Fsp4HI GCNGC 2 cut(s) 257, 425
FspBI CTAG 2 cut(s) 416, 764
GluI GCNGC 2 cut(s) 257, 425
HaeIII GGCC 4 cut(s) 137, 157, 830, 926
Hin1I GRCGYC 1 cut(s) 112
Hin1II CATG 3 cut(s) 377, 589, 671
HincII GTYRAC 1 cut(s) 116
HindII GTYRAC 1 cut(s) 116
HindIII AAGCTT 2 cut(s) 331, 350
HinfI GANTC 3 cut(s) 65, 93, 518
HphI GGTGA 1 cut(s) 595
Hpy166II GTNNAC 7 cut(s) 116, 144, 172, 298, 308, 364, 649
Hpy188I TCNGA 4 cut(s) 343, 441, 562, 760
Hpy188III TCNNGA 1 cut(s) 775
Hpy8I GTNNAC 7 cut(s) 116, 144, 172, 298, 308, 364, 649
Hpy99I CGWCG 1 cut(s) 117
HpyAV CCTTC 1 cut(s) 7
HpyCH4III ACNGT 1 cut(s) 797
HpyCH4IV ACGT 2 cut(s) 57, 112
HpyF10VI GCNNNNNNNGC 3 cut(s) 196, 205, 842
HpyF3I CTNAG 3 cut(s) 260, 597, 759
HpySE526I ACGT 2 cut(s) 57, 112
Hsp92I GRCGYC 1 cut(s) 112
Hsp92II CATG 3 cut(s) 377, 589, 671
KflI GGGWCCC 1 cut(s) 741
Kzo9I GATC 1 cut(s) 376
LmnI GCTCC 2 cut(s) 664, 813
Lsp1109I GCAGC 2 cut(s) 268, 436
LweI GCATC 5 cut(s) 177, 472, 667, 845, 860
MaeI CTAG 2 cut(s) 416, 764
MaeII ACGT 2 cut(s) 57, 112
MaeIII GTNAC 1 cut(s) 601
MalI GATC 1 cut(s) 378
MboI GATC 1 cut(s) 376
MboII GAAGA 5 cut(s) 290, 540, 698, 779, 833
MhlI GDGCHC 2 cut(s) 242, 300
MluCI AATT 4 cut(s) 17, 435, 457, 911
MlyI GAGTC 1 cut(s) 87
MmeI TCCRAC 3 cut(s) 21, 42, 879
MroXI GAANNNNTTC 2 cut(s) 17, 446
MseI TTAA 5 cut(s) 221, 455, 617, 800, 914
MslI CAYNNNNRTG 1 cut(s) 303
MspA1I CMGCKG 1 cut(s) 259
Mva1269I GAATGC 1 cut(s) 883
MwoI GCNNNNNNNGC 3 cut(s) 196, 205, 842
NdeII GATC 1 cut(s) 376
NlaIII CATG 3 cut(s) 377, 589, 671
NlaIV GGNNCC 3 cut(s) 742, 743, 789
NmeAIII GCCGAG 1 cut(s) 856
NmuCI GTSAC 1 cut(s) 601
NspI RCATGY 2 cut(s) 589, 671
OliI CACNNNNGTG 1 cut(s) 303
PaeI GCATGC 1 cut(s) 589
PctI GAATGC 1 cut(s) 883
PdmI GAANNNNTTC 2 cut(s) 17, 446
PfeI GAWTC 2 cut(s) 65, 518
PkrI GCNGC 2 cut(s) 258, 426
PleI GAGTC 1 cut(s) 87
PpsI GAGTC 1 cut(s) 87
PpuMI RGGWCCY 1 cut(s) 741
PsiI TTATAA 1 cut(s) 687
Psp124BI GAGCTC 1 cut(s) 242
Psp5II RGGWCCY 1 cut(s) 741
PspEI GGTNACC 1 cut(s) 601
PspN4I GGNNCC 3 cut(s) 742, 743, 789
PspPI GGNCC 3 cut(s) 364, 741, 828
PspPPI RGGWCCY 1 cut(s) 741
PstI CTGCAG 3 cut(s) 201, 734, 855
PstNI CAGNNNCTG 1 cut(s) 582
PvuII CAGCTG 1 cut(s) 259
RsaI GTAC 3 cut(s) 145, 580, 650
RsaNI GTAC 3 cut(s) 144, 579, 649
RseI CAYNNNNRTG 1 cut(s) 303
SacI GAGCTC 1 cut(s) 242
SalI GTCGAC 1 cut(s) 114
SaqAI TTAA 5 cut(s) 221, 455, 617, 800, 914
SatI GCNGC 2 cut(s) 257, 425
Sau3AI GATC 1 cut(s) 376
Sau96I GGNCC 3 cut(s) 364, 741, 828
SchI GAGTC 1 cut(s) 87
SduI GDGCHC 2 cut(s) 242, 300
SfaNI GCATC 5 cut(s) 177, 472, 667, 845, 860
SfcI CTRYAG 3 cut(s) 197, 730, 851
SinI GGWCC 2 cut(s) 364, 741
SmiMI CAYNNNNRTG 1 cut(s) 303
SmlI CTYRAG 4 cut(s) 22, 95, 119, 775
SmoI CTYRAG 4 cut(s) 22, 95, 119, 775
SphI GCATGC 1 cut(s) 589
Sse9I AATT 4 cut(s) 17, 435, 457, 911
SsiI CCGC 1 cut(s) 401
SspMI CTAG 2 cut(s) 416, 764
SstI GAGCTC 1 cut(s) 242
TaaI ACNGT 1 cut(s) 797
TaiI ACGT 2 cut(s) 60, 115
TaqI TCGA 2 cut(s) 115, 232
TasI AATT 4 cut(s) 17, 435, 457, 911
TatI WGTACW 2 cut(s) 143, 648
TfiI GAWTC 2 cut(s) 65, 518
Tru1I TTAA 5 cut(s) 221, 455, 617, 800, 914
Tru9I TTAA 5 cut(s) 221, 455, 617, 800, 914
TscAI CASTG 2 cut(s) 165, 648
TseFI GTSAC 1 cut(s) 601
TseI GCWGC 2 cut(s) 256, 424
Tsp45I GTSAC 1 cut(s) 601
TspDTI ATGAA 5 cut(s) 57, 491, 552, 698, 713
TspRI CASTG 2 cut(s) 165, 648
VneI GTGCAC 1 cut(s) 296
VpaK11BI GGWCC 2 cut(s) 364, 741
XapI RAATTY 2 cut(s) 17, 457
XceI RCATGY 2 cut(s) 589, 671
XmiI GTMKAC 2 cut(s) 115, 171
XmnI GAANNNNTTC 2 cut(s) 17, 446
XspI CTAG 2 cut(s) 416, 764
ZraI GACGTC 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.