Rh2CG318300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0005564
Physical Location & Seq
Forward (+)
40743801 .. 40745241
1441 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG318300.1

Sequence Viewer

Length: 804 bp
ATGAATAAGATTGAATATGTGAAGTCAGATATGGGAAATACAGTTGGAGAAACTTTACAGAAGTTGGAAAAGCAAATTGAAGTAATGAAGGAGCAGATGATTCCTAATATTGTTGCTGAAGTCGCTAAGTTGATGAGCAAACCAGAGGCACATCAAGTTATGAATGAAAAGGTCATAATGGAGGTCAGCCATAATGTAGTGCATATCATTGAATCTGAAGGTGGAAATGATGTCAAGTGCCAAGACCCTTCTGAATTGGATTCTTTGATTGTGGTTGGTACACGCATGGGAAACCCTCCCCAAGCACCAGTTATTCATAGACCTGAGGTGAGATTGAACCGTGGAAAAGGGGGAAATGGGAGTCAACGGTCTGATTGTTCTCGCAGCCCACTTGGAAATGGTGGTACCGTAATGAAGAATAACCTGGCTCCCACAAAAACTCAAGCACCTGTGCGTGTCGTATTTCCCCAAAGCAACAATAATGTTGATACAAAGTGCAAGAAGCAGAAGCCAAAGATCCCGGATGTTGGCCGATTACATGCAGCAAGTGGTATCTCTGCAATGGATGAGGAAATTTTGAACTTCCTTTTCCCTGCTAGTCAGCTAACTGCTGATGAGTCCAGCTACATGGTTGCTGGTTGTGATGGTTTTCTCATAAATCGAGGCGATATCGCATGTTTGCAACCACAAACCCCTCTACTCGATGATGTCATTAATGTTATGGCTGCTTACATGTATGAAAGACACTCTCTCTCTTGGTTCTTCCCTACCCATTTTGGTCACAAAACAATGTGGGAAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

267

Amino Acids

29.53

Weight (kDa)

6.25

Isoelectric Point (pI)

53.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 404
AccB1I GGYRCC 1 cut(s) 404
AclWI GGATC 1 cut(s) 511
AcoI YGGCCR 1 cut(s) 529
AcsI RAATTY 2 cut(s) 573, 798
AcuI CTGAAG 2 cut(s) 138, 237
AfaI GTAC 2 cut(s) 280, 406
AfiI CCNNNNNNNGG 1 cut(s) 527
AflIII ACRYGT 1 cut(s) 732
AgsI TTSAA 5 cut(s) 14, 80, 212, 337, 580
AjnI CCWGG 1 cut(s) 423
AluBI AGCT 2 cut(s) 604, 624
AluI AGCT 2 cut(s) 604, 624
AlwI GGATC 1 cut(s) 511
AoxI GGCC 1 cut(s) 529
ApeKI GCWGC 3 cut(s) 384, 542, 725
ApoI RAATTY 2 cut(s) 573, 798
AseI ATTAAT 1 cut(s) 714
Asp718I GGTACC 1 cut(s) 404
AsuC2I CCSGG 1 cut(s) 521
AsuHPI GGTGA 1 cut(s) 340
AxyI CCTNAGG 1 cut(s) 324
BanI GGYRCC 1 cut(s) 404
BbvI GCAGC 3 cut(s) 396, 554, 712
BccI CCATC 1 cut(s) 638
BciT130I CCWGG 1 cut(s) 425
BcnI CCSGG 1 cut(s) 521
BfaI CTAG 1 cut(s) 597
BisI GCNGC 3 cut(s) 385, 543, 726
BlsI GCNGC 3 cut(s) 386, 544, 727
Bme1390I CCNGG 2 cut(s) 425, 521
BmiI GGNNCC 2 cut(s) 406, 429
BmrFI CCNGG 2 cut(s) 425, 521
BpuEI CTTGAG 1 cut(s) 426
BpuMI CCSGG 1 cut(s) 521
BsaJI CCNNGG 1 cut(s) 340
Bsc4I CCNNNNNNNGG 1 cut(s) 527
Bse1I ACTGG 1 cut(s) 308
Bse21I CCTNAGG 1 cut(s) 324
Bse3DI GCAATG 1 cut(s) 567
BseBI CCWGG 1 cut(s) 425
BseDI CCNNGG 1 cut(s) 340
BseGI GGATG 2 cut(s) 529, 571
BseLI CCNNNNNNNGG 1 cut(s) 527
BseMI GCAATG 1 cut(s) 567
BseMII CTCAG 1 cut(s) 315
BseNI ACTGG 1 cut(s) 308
BseXI GCAGC 3 cut(s) 396, 554, 712
BshFI GGCC 1 cut(s) 531
BshNI GGYRCC 1 cut(s) 404
BsiSI CCGG 1 cut(s) 521
BslI CCNNNNNNNGG 1 cut(s) 527
BsnI GGCC 1 cut(s) 531
Bsp143I GATC 1 cut(s) 516
BspANI GGCC 1 cut(s) 531
BspCNI CTCAG 1 cut(s) 316
BspLI GGNNCC 2 cut(s) 406, 429
BspPI GGATC 1 cut(s) 511
BspT107I GGYRCC 1 cut(s) 404
BsrDI GCAATG 1 cut(s) 567
BsrI ACTGG 1 cut(s) 308
BssECI CCNNGG 1 cut(s) 340
BssMI GATC 1 cut(s) 516
Bst2UI CCWGG 1 cut(s) 425
Bst4CI ACNGT 4 cut(s) 43, 341, 369, 409
BstDEI CTNAG 2 cut(s) 126, 324
BstDSI CCRYGG 1 cut(s) 340
BstF5I GGATG 2 cut(s) 529, 571
BstKTI GATC 1 cut(s) 519
BstMBI GATC 1 cut(s) 516
BstMWI GCNNNNNNNGC 1 cut(s) 122
BstNI CCWGG 1 cut(s) 425
BstNSI RCATGY 3 cut(s) 542, 678, 736
BstSCI CCNGG 2 cut(s) 423, 519
BstV1I GCAGC 3 cut(s) 396, 554, 712
BstX2I RGATCY 1 cut(s) 516
BstXI CCANNNNNNTGG 1 cut(s) 628
BstYI RGATCY 1 cut(s) 516
Bsu36I CCTNAGG 1 cut(s) 324
BsuRI GGCC 1 cut(s) 531
BtgI CCRYGG 1 cut(s) 340
BtsCI GGATG 2 cut(s) 529, 571
Csp6I GTAC 2 cut(s) 279, 405
CviAII CATG 5 cut(s) 286, 539, 628, 675, 733
CviJI RGCY 8 cut(s) 189, 387, 428, 511, 531, 604, 624, 725
CviKI_1 RGCY 8 cut(s) 189, 387, 428, 511, 531, 604, 624, 725
CviQI GTAC 2 cut(s) 279, 405
DdeI CTNAG 2 cut(s) 126, 324
DpnI GATC 1 cut(s) 518
DpnII GATC 1 cut(s) 516
EaeI YGGCCR 1 cut(s) 529
Eco32I GATATC 1 cut(s) 670
Eco57I CTGAAG 2 cut(s) 138, 237
Eco81I CCTNAGG 1 cut(s) 324
EcoRII CCWGG 1 cut(s) 423
EcoRV GATATC 1 cut(s) 670
FaeI CATG 5 cut(s) 289, 542, 631, 678, 736
FatI CATG 5 cut(s) 285, 538, 627, 674, 732
Fnu4HI GCNGC 3 cut(s) 385, 543, 726
FokI GGATG 2 cut(s) 536, 578
Fsp4HI GCNGC 3 cut(s) 385, 543, 726
FspBI CTAG 1 cut(s) 597
GluI GCNGC 3 cut(s) 385, 543, 726
HaeIII GGCC 1 cut(s) 531
HapII CCGG 1 cut(s) 521
Hin1II CATG 5 cut(s) 289, 542, 631, 678, 736
HincII GTYRAC 1 cut(s) 365
HindII GTYRAC 1 cut(s) 365
HinfI GANTC 5 cut(s) 100, 212, 260, 361, 617
HpaII CCGG 1 cut(s) 521
HphI GGTGA 1 cut(s) 340
Hpy166II GTNNAC 2 cut(s) 281, 365
Hpy188I TCNGA 4 cut(s) 28, 217, 253, 373
Hpy8I GTNNAC 2 cut(s) 281, 365
HpyAV CCTTC 3 cut(s) 82, 212, 258
HpyCH4III ACNGT 4 cut(s) 43, 341, 369, 409
HpyCH4V TGCA 5 cut(s) 202, 498, 542, 560, 682
HpyF10VI GCNNNNNNNGC 1 cut(s) 122
HpyF3I CTNAG 2 cut(s) 126, 324
Hsp92II CATG 5 cut(s) 289, 542, 631, 678, 736
KpnI GGTACC 1 cut(s) 408
Kzo9I GATC 1 cut(s) 516
LmnI GCTCC 2 cut(s) 91, 433
Lsp1109I GCAGC 3 cut(s) 396, 554, 712
MaeI CTAG 1 cut(s) 597
MaeIII GTNAC 1 cut(s) 779
MalI GATC 1 cut(s) 518
MboI GATC 1 cut(s) 516
MboII GAAGA 2 cut(s) 427, 754
MflI RGATCY 1 cut(s) 516
MluCI AATT 4 cut(s) 75, 254, 573, 798
MlyI GAGTC 2 cut(s) 370, 626
MmeI TCCRAC 2 cut(s) 25, 45
MnlI CCTC 7 cut(s) 139, 175, 306, 319, 562, 656, 705
MseI TTAA 1 cut(s) 714
MspI CCGG 1 cut(s) 521
MspR9I CCNGG 2 cut(s) 425, 521
MvaI CCWGG 1 cut(s) 425
MwoI GCNNNNNNNGC 1 cut(s) 122
NciI CCSGG 1 cut(s) 521
NdeII GATC 1 cut(s) 516
NlaIII CATG 5 cut(s) 289, 542, 631, 678, 736
NlaIV GGNNCC 2 cut(s) 406, 429
NmuCI GTSAC 1 cut(s) 779
NspI RCATGY 3 cut(s) 542, 678, 736
PciI ACATGT 1 cut(s) 732
PfeI GAWTC 3 cut(s) 100, 212, 260
PfoI TCCNGGA 1 cut(s) 519
PkrI GCNGC 3 cut(s) 386, 544, 727
PleI GAGTC 2 cut(s) 369, 625
PpsI GAGTC 2 cut(s) 369, 625
PscI ACATGT 1 cut(s) 732
PshBI ATTAAT 1 cut(s) 714
Psp6I CCWGG 1 cut(s) 423
PspGI CCWGG 1 cut(s) 423
PspN4I GGNNCC 2 cut(s) 406, 429
PsuI RGATCY 1 cut(s) 516
RsaI GTAC 2 cut(s) 280, 406
RsaNI GTAC 2 cut(s) 279, 405
SaqAI TTAA 1 cut(s) 714
SatI GCNGC 3 cut(s) 385, 543, 726
Sau3AI GATC 1 cut(s) 516
SchI GAGTC 2 cut(s) 370, 626
ScrFI CCNGG 2 cut(s) 425, 521
SetI ASST 9 cut(s) 174, 186, 223, 325, 330, 426, 451, 606, 626
SmlI CTYRAG 1 cut(s) 441
SmoI CTYRAG 1 cut(s) 441
Sse9I AATT 4 cut(s) 75, 254, 573, 798
SspI AATATT 1 cut(s) 109
SspMI CTAG 1 cut(s) 597
StyD4I CCNGG 2 cut(s) 423, 519
TaaI ACNGT 4 cut(s) 43, 341, 369, 409
TaqI TCGA 2 cut(s) 661, 702
TasI AATT 4 cut(s) 75, 254, 573, 798
TfiI GAWTC 3 cut(s) 100, 212, 260
Tru1I TTAA 1 cut(s) 714
Tru9I TTAA 1 cut(s) 714
TseFI GTSAC 1 cut(s) 779
TseI GCWGC 3 cut(s) 384, 542, 725
Tsp45I GTSAC 1 cut(s) 779
TspDTI ATGAA 7 cut(s) 17, 101, 176, 180, 305, 428, 753
VspI ATTAAT 1 cut(s) 714
XapI RAATTY 2 cut(s) 573, 798
XceI RCATGY 3 cut(s) 542, 678, 736
XspI CTAG 1 cut(s) 597
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.