Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0005564

Physical Location & Seq

Genomic Coordinates Reverse (-)

41865221 .. 41874164

Gene Structure 8944 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG317500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGAAGAATAACTTGACTCCCACAAAAACTCAAGCACCTGTGCGTGTCATATTTCCCCAAAGCAACAATAATGTTAATCCAAAGTGCAAGAAGCAAAAGCCAAAAATCCCTGATGTTGGCCGATTACATGCACCAAGTGGTATCTCTGCAATGGATGAGGAAATTCTGAACTTCCTTTTCCCTGCTATACTACGTTATCCTAACTGCTCATCTAATTTCCAGTTCAACACTGCTGATCAGCGTGTGAAACTTGCTTTGGAATTAGTGAAGCATCCTAAAAACACAGATCAAACATATGTCTTCAATAACATAAGCTGCATGAGGCCTAGGGTCCATGCCACGGGACGTGTAGGAGATGGCGATATGTGCACAGACACTTCTGGTTCTATGAAAACTCCAAAGAGCAACAATGCTAAAAAAAATGTCACTAGCAACAGGAAAAGGGCAACAAGTAACGTGGAGAATGATGGCGGTCTCAATCCTAGCAAGTCCAATACTCAAAGAAAGATACCTGCAACGAAGAATGAGTTGAGGCATAAGGTAAAGATAAGGGCAGAAAAACTGAAGAAAAAGAGAGATGAACAAAAGGCAGCAGCAGTAAAAGGATCAAATGCTTCAGGCAAGCCAAAAGGTAGACCTCCAAAGGCTTTAGCAACTTCTGCCCCAGCTCCAGCAAATGCTAAAGCTCCTCCTGCTACAACAAGGTCTAAACCTCCAGCCAAGCCATCATCATCTTCTAAGCAAGCAGCTCCGACTAGGTCCTCTAGCAGAATCAGAGCTAATGCAAAGGATGGGAAAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

267

Amino Acids

29.01

Weight (kDa)

10.67

Isoelectric Point (pI)

42.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005564)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000001694 RLG00000001803 RLG00000007893 RLG00000010044 RLG00000022360 RLG00000022941 RLG00000028365
rosa_multiflora	Rmu_sc0011772.1_g000001
rosa_roxburghii	Rroxscaffold_4G00316120 Rroxscaffold_7G00214530
rosa_rugosa	Rorug01G0267700 Rorug04G0149900
rosa_samantha	Rh1AG047500 Rh1DG148500 Rh1DG259400 Rh1DG276600 Rh1DG373800 Rh2AG039100 Rh2AG317500 Rh2AG317600 Rh2BG325800 Rh2BG325900 Rh2BG326000 Rh2CG318200 Rh2CG318300 Rh2CG318400 Rh3CG274500 Rh3CG354900
rosa_wichuraiana	Rw2G025690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	520
AccI	GTMKAC	1 cut(s)	634
AciI	CCGC	1 cut(s)	471
AclWI	GGATC	1 cut(s)	613
AcoI	YGGCCR	1 cut(s)	118
AcsI	RAATTY	1 cut(s)	162
AcuI	CTGAAG	2 cut(s)	584, 600
AdeI	CACNNNGTG	1 cut(s)	137
AfiI	CCNNNNNNNGG	2 cut(s)	116, 340
AflIII	ACRYGT	1 cut(s)	346
AgsI	TTSAA	2 cut(s)	226, 304
AjiI	CACGTC	1 cut(s)	347
AjuI	GAANNNNNNNTTGG	2 cut(s)	239, 271
AluBI	AGCT	5 cut(s)	315, 668, 686, 749, 779
AluI	AGCT	5 cut(s)	315, 668, 686, 749, 779
Alw21I	GWGCWC	1 cut(s)	371
Alw26I	GTCTC	1 cut(s)	479
Alw44I	GTGCAC	1 cut(s)	367
AlwI	GGATC	1 cut(s)	613
AoxI	GGCC	2 cut(s)	118, 323
ApaLI	GTGCAC	1 cut(s)	367
ApeKI	GCWGC	4 cut(s)	315, 590, 593, 746
ApoI	RAATTY	1 cut(s)	162
AspA2I	CCTAGG	1 cut(s)	326
AspS9I	GGNCC	2 cut(s)	331, 759
AvaII	GGWCC	2 cut(s)	331, 759
AvrII	CCTAGG	1 cut(s)	326
BaeGI	GKGCMC	1 cut(s)	371
BbsI	GAAGAC	1 cut(s)	292
Bbv12I	GWGCWC	1 cut(s)	371
BbvI	GCAGC	4 cut(s)	302, 602, 605, 758
BccI	CCATC	4 cut(s)	350, 461, 733, 785
BclI	TGATCA	1 cut(s)	235
BcoDI	GTCTC	1 cut(s)	479
BfaI	CTAG	5 cut(s)	327, 429, 483, 756, 765
BfuAI	ACCTGC	1 cut(s)	520
BisI	GCNGC	4 cut(s)	316, 591, 594, 747
BlnI	CCTAGG	1 cut(s)	326
BlsI	GCNGC	4 cut(s)	317, 592, 595, 748
Bme18I	GGWCC	2 cut(s)	331, 759
BmgBI	CACGTC	1 cut(s)	347
BmgT120I	GGNCC	2 cut(s)	331, 759
BmiI	GGNNCC	1 cut(s)	332
BmsI	GCATC	1 cut(s)	280
BpiI	GAAGAC	1 cut(s)	292
BpmI	CTGGAG	2 cut(s)	654, 699
BpuEI	CTTGAG	1 cut(s)	15
BsaI	GGTCTC	1 cut(s)	479
BsaJI	CCNNGG	2 cut(s)	326, 339
Bsc4I	CCNNNNNNNGG	2 cut(s)	116, 340
Bse1I	ACTGG	1 cut(s)	220
Bse3DI	GCAATG	1 cut(s)	156
BseDI	CCNNGG	2 cut(s)	326, 339
BseGI	GGATG	3 cut(s)	160, 271, 796
BseLI	CCNNNNNNNGG	2 cut(s)	116, 340
BseMI	GCAATG	1 cut(s)	156
BseNI	ACTGG	1 cut(s)	220
BseRI	GAGGAG	1 cut(s)	678
BseSI	GKGCMC	1 cut(s)	371
BseXI	GCAGC	4 cut(s)	302, 602, 605, 758
BseYI	CCCAGC	1 cut(s)	664
BshFI	GGCC	2 cut(s)	120, 325
BsiHKAI	GWGCWC	1 cut(s)	371
BslFI	GGGAC	1 cut(s)	357
BslI	CCNNNNNNNGG	2 cut(s)	116, 340
BsmAI	GTCTC	1 cut(s)	479
BsmFI	GGGAC	1 cut(s)	357
BsnI	GGCC	2 cut(s)	120, 325
Bso31I	GGTCTC	1 cut(s)	479
Bsp1286I	GDGCHC	1 cut(s)	371
Bsp143I	GATC	3 cut(s)	235, 286, 605
BspACI	CCGC	1 cut(s)	471
BspANI	GGCC	2 cut(s)	120, 325
BspLI	GGNNCC	1 cut(s)	332
BspMI	ACCTGC	1 cut(s)	520
BspPI	GGATC	1 cut(s)	613
BspTNI	GGTCTC	1 cut(s)	479
BsrDI	GCAATG	1 cut(s)	156
BsrI	ACTGG	1 cut(s)	220
BssECI	CCNNGG	2 cut(s)	326, 339
BssMI	GATC	3 cut(s)	235, 286, 605
BssT1I	CCWWGG	1 cut(s)	326
BstAPI	GCANNNNNTGC	1 cut(s)	659
BstC8I	GCNNGC	2 cut(s)	623, 744
BstDEI	CTNAG	1 cut(s)	738
BstDSI	CCRYGG	1 cut(s)	339
BstF5I	GGATG	3 cut(s)	160, 271, 796
BstKTI	GATC	3 cut(s)	238, 289, 608
BstMAI	GTCTC	1 cut(s)	479
BstMBI	GATC	3 cut(s)	235, 286, 605
BstMWI	GCNNNNNNNGC	3 cut(s)	366, 659, 692
BstNSI	RCATGY	1 cut(s)	131
BstSLI	GKGCMC	1 cut(s)	371
BstV1I	GCAGC	4 cut(s)	302, 602, 605, 758
BstV2I	GAAGAC	1 cut(s)	292
BsuRI	GGCC	2 cut(s)	120, 325
BtgI	CCRYGG	1 cut(s)	339
BtrI	CACGTC	1 cut(s)	347
BtsCI	GGATG	3 cut(s)	160, 271, 796
BtsI	GCAGTG	1 cut(s)	228
BtsIMutI	CAGTG	1 cut(s)	228
BveI	ACCTGC	1 cut(s)	520
Cac8I	GCNNGC	2 cut(s)	623, 744
Cfr13I	GGNCC	2 cut(s)	331, 759
CspCI	CAANNNNNGTGG	2 cut(s)	438, 473
CviAII	CATG	3 cut(s)	128, 319, 335
DdeI	CTNAG	1 cut(s)	738
DpnI	GATC	3 cut(s)	237, 288, 607
DpnII	GATC	3 cut(s)	235, 286, 605
DraIII	CACNNNGTG	1 cut(s)	137
EaeI	YGGCCR	1 cut(s)	118
Eco130I	CCWWGG	1 cut(s)	326
Eco147I	AGGCCT	1 cut(s)	325
Eco31I	GGTCTC	1 cut(s)	479
Eco47I	GGWCC	2 cut(s)	331, 759
Eco57I	CTGAAG	2 cut(s)	584, 600
EcoO109I	RGGNCCY	1 cut(s)	759
EcoT14I	CCWWGG	1 cut(s)	326
ErhI	CCWWGG	1 cut(s)	326
FaeI	CATG	3 cut(s)	131, 322, 338
FalI	AAGNNNNNCTT	1 cut(s)	28
FaqI	GGGAC	1 cut(s)	357
FatI	CATG	3 cut(s)	127, 318, 334
FauNDI	CATATG	1 cut(s)	295
FbaI	TGATCA	1 cut(s)	235
FblI	GTMKAC	1 cut(s)	634
Fnu4HI	GCNGC	4 cut(s)	316, 591, 594, 747
FokI	GGATG	2 cut(s)	167, 258
Fsp4HI	GCNGC	4 cut(s)	316, 591, 594, 747
FspBI	CTAG	5 cut(s)	327, 429, 483, 756, 765
GluI	GCNGC	4 cut(s)	316, 591, 594, 747
GsaI	CCCAGC	1 cut(s)	668
GsuI	CTGGAG	2 cut(s)	654, 699
HaeIII	GGCC	2 cut(s)	120, 325
Hin1II	CATG	3 cut(s)	131, 322, 338
HinfI	GANTC	2 cut(s)	16, 771
Hpy166II	GTNNAC	2 cut(s)	369, 635
Hpy188I	TCNGA	3 cut(s)	168, 753, 776
Hpy8I	GTNNAC	2 cut(s)	369, 635
HpyCH4IV	ACGT	3 cut(s)	193, 346, 456
HpyCH4V	TGCA	7 cut(s)	87, 131, 149, 318, 369, 515, 785
HpyF10VI	GCNNNNNNNGC	3 cut(s)	366, 659, 692
HpyF3I	CTNAG	1 cut(s)	738
HpySE526I	ACGT	3 cut(s)	193, 346, 456
Hsp92II	CATG	3 cut(s)	131, 322, 338
Ksp22I	TGATCA	1 cut(s)	235
Kzo9I	GATC	3 cut(s)	235, 286, 605
LmnI	GCTCC	3 cut(s)	673, 691, 754
Lsp1109I	GCAGC	4 cut(s)	302, 602, 605, 758
LweI	GCATC	1 cut(s)	280
MaeI	CTAG	5 cut(s)	327, 429, 483, 756, 765
MaeII	ACGT	3 cut(s)	193, 346, 456
MaeIII	GTNAC	2 cut(s)	424, 452
MalI	GATC	3 cut(s)	237, 288, 607
MboI	GATC	3 cut(s)	235, 286, 605
MboII	GAAGA	5 cut(s)	16, 292, 532, 577, 726
MhlI	GDGCHC	1 cut(s)	371
MluCI	AATT	3 cut(s)	162, 214, 260
MlyI	GAGTC	1 cut(s)	10
MmeI	TCCRAC	1 cut(s)	776
MnlI	CCTC	7 cut(s)	151, 315, 525, 648, 699, 723, 772
MseI	TTAA	1 cut(s)	75
MwoI	GCNNNNNNNGC	3 cut(s)	366, 659, 692
NdeI	CATATG	1 cut(s)	295
NdeII	GATC	3 cut(s)	235, 286, 605
NlaIII	CATG	3 cut(s)	131, 322, 338
NlaIV	GGNNCC	1 cut(s)	332
NmuCI	GTSAC	1 cut(s)	424
NspI	RCATGY	1 cut(s)	131
PceI	AGGCCT	1 cut(s)	325
PfeI	GAWTC	1 cut(s)	771
PflFI	GACNNNGTC	1 cut(s)	757
PkrI	GCNGC	4 cut(s)	317, 592, 595, 748
PleI	GAGTC	1 cut(s)	10
PpsI	GAGTC	1 cut(s)	10
PpuMI	RGGWCCY	1 cut(s)	759
Psp5II	RGGWCCY	1 cut(s)	759
PspFI	CCCAGC	1 cut(s)	664
PspN4I	GGNNCC	1 cut(s)	332
PspPI	GGNCC	2 cut(s)	331, 759
PspPPI	RGGWCCY	1 cut(s)	759
PsyI	GACNNNGTC	1 cut(s)	757
SaqAI	TTAA	1 cut(s)	75
SatI	GCNGC	4 cut(s)	316, 591, 594, 747
Sau3AI	GATC	3 cut(s)	235, 286, 605
Sau96I	GGNCC	2 cut(s)	331, 759
SchI	GAGTC	1 cut(s)	10
SduI	GDGCHC	1 cut(s)	371
SfaNI	GCATC	1 cut(s)	280
SinI	GGWCC	2 cut(s)	331, 759
SmlI	CTYRAG	1 cut(s)	30
SmoI	CTYRAG	1 cut(s)	30
Sse9I	AATT	3 cut(s)	162, 214, 260
SseBI	AGGCCT	1 cut(s)	325
SsiI	CCGC	1 cut(s)	471
SspMI	CTAG	5 cut(s)	327, 429, 483, 756, 765
StuI	AGGCCT	1 cut(s)	325
StyI	CCWWGG	1 cut(s)	326
TaiI	ACGT	3 cut(s)	196, 349, 459
TasI	AATT	3 cut(s)	162, 214, 260
TfiI	GAWTC	1 cut(s)	771
Tru1I	TTAA	1 cut(s)	75
Tru9I	TTAA	1 cut(s)	75
TscAI	CASTG	1 cut(s)	235
TseFI	GTSAC	1 cut(s)	424
TseI	GCWGC	4 cut(s)	315, 590, 593, 746
Tsp45I	GTSAC	1 cut(s)	424
TspDTI	ATGAA	3 cut(s)	17, 404, 594
TspRI	CASTG	1 cut(s)	235
Tth111I	GACNNNGTC	1 cut(s)	757
VneI	GTGCAC	1 cut(s)	367
VpaK11BI	GGWCC	2 cut(s)	331, 759
XapI	RAATTY	1 cut(s)	162
XceI	RCATGY	1 cut(s)	131
XmaJI	CCTAGG	1 cut(s)	326
XmiI	GTMKAC	1 cut(s)	634
XspI	CTAG	5 cut(s)	327, 429, 483, 756, 765

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.