Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0005564

Physical Location & Seq

Genomic Coordinates Reverse (-)

38724227 .. 38726333

Gene Structure 2107 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G025690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGAAGTAATGAAGGAGCATATGATTCCTAATATTGTTGCTGAAGTCACTAAGTTGATGAGCAGACCATTGGCACATGAAGTTATGAACGAAAATCTCATAATGGAGGTGATATTGAATCGTGGAGAAGGGGGAAATGGGAGTCAATGGTCTAATTGTTCTCGTAGCCCACTTGGACATGGTGGTATCGCAATGAAGAATAACTTGGCTCCCACAAAAACTCAAGCACCTGTGCGTGTCCTATTTCCCCAAAACAACAATAATGTTAATCCAAAGTGCAAGAAGCAAAAGCCAAAGATCCCGAATGTTGGCCAATTACATGCACCAAGTGGTATCTCTGCAATGGATGAGGAAATTCTGAACTTCCTTTTCCCTGCTAGTCAGCTAACTGCTGATGAGTCCAGCTACATGGTTGCTGGGTGTGATGGGTTTCTCATAAATCGAGGCGATATCGCATGTTTGCAACCACAAACCCCTCTACTCGATGATTTGAGCCACCTTGATAGGGTCTTTGCTAATGACATCATGCATTTAGAACTCGCGCATTTGGACCAATGGTTCGAGTTCATGCACTTCACTTTTATCAATGGAGCCTTCAATCGGATACAAGACAACACTTGTGACTGTGGGATATATGTTATACATCATATGCAAAATGGAGGTTCTGCTTGGCGATTTGGGTTCAATTCTGCTGATCAGCGTGTGAAACTTGCTTTGGAATTAGTGAAGCATCCTAAAAACACAGATCAGACATATGTCTTGAATAACATACGCTGCATGACACCTAGAGTCCATGCCAAGGGACGTGTAGGAGATGGCGATATGTGCACATACACTTTTGGTTCTATGAAAACTCTAAAGAGCAACAATGTTAAAAAGAAGGTCACTGGCAATAGGAAAAAGGCAGCAGGTAACGTGGAGAATGATGGCTGTCTCAATCCCAGCGAGGTGCCCGTATGCCGCGCCGGCAATGATGATCCTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009737 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030163 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048519 GO:0050789 GO:0050896 GO:0051603 GO:0060255 GO:0065007 GO:0070647 GO:0071704 GO:0097305 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04931 map04931

Pfam Domains

Protein Families

PTPA

Protein Analysis

328

Amino Acids

36.39

Weight (kDa)

7.61

Isoelectric Point (pI)

34.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005564)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000001694 RLG00000001803 RLG00000007893 RLG00000010044 RLG00000022360 RLG00000022941 RLG00000028365
rosa_multiflora	Rmu_sc0011772.1_g000001
rosa_roxburghii	Rroxscaffold_4G00316120 Rroxscaffold_7G00214530
rosa_rugosa	Rorug01G0267700 Rorug04G0149900
rosa_samantha	Rh1AG047500 Rh1DG148500 Rh1DG259400 Rh1DG276600 Rh1DG373800 Rh2AG039100 Rh2AG317500 Rh2AG317600 Rh2BG325800 Rh2BG325900 Rh2BG326000 Rh2CG318200 Rh2CG318300 Rh2CG318400 Rh3CG274500 Rh3CG354900
rosa_wichuraiana	Rw2G025690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	899
AccB1I	GGYRCC	1 cut(s)	949
AccII	CGCG	2 cut(s)	542, 963
AciI	CCGC	1 cut(s)	961
AclWI	GGATC	2 cut(s)	292, 971
AcoI	YGGCCR	1 cut(s)	310
AcsI	RAATTY	1 cut(s)	354
AcuI	CTGAAG	1 cut(s)	63
AdeI	CACNNNGTG	1 cut(s)	329
AfiI	CCNNNNNNNGG	4 cut(s)	308, 505, 600, 799
AflIII	ACRYGT	1 cut(s)	805
AgsI	TTSAA	4 cut(s)	118, 598, 685, 763
AjiI	CACGTC	1 cut(s)	806
AjuI	GAANNNNNNNTTGG	4 cut(s)	188, 220, 698, 730
AloI	GAACNNNNNNTCC	2 cut(s)	542, 574
AluBI	AGCT	2 cut(s)	385, 405
AluI	AGCT	2 cut(s)	385, 405
Alw21I	GWGCWC	1 cut(s)	830
Alw26I	GTCTC	1 cut(s)	938
Alw44I	GTGCAC	1 cut(s)	826
AlwI	GGATC	2 cut(s)	292, 971
AoxI	GGCC	1 cut(s)	310
ApaLI	GTGCAC	1 cut(s)	826
ApeKI	GCWGC	2 cut(s)	774, 905
ApoI	RAATTY	1 cut(s)	354
ArsI	GACNNNNNNTTYG	2 cut(s)	542, 574
AspLEI	GCGC	2 cut(s)	544, 965
AspS9I	GGNCC	1 cut(s)	550
AsuHPI	GGTGA	1 cut(s)	121
AvaII	GGWCC	1 cut(s)	550
BaeGI	GKGCMC	2 cut(s)	830, 954
BalI	TGGCCA	1 cut(s)	312
BanI	GGYRCC	1 cut(s)	949
Bbv12I	GWGCWC	1 cut(s)	830
BbvI	GCAGC	2 cut(s)	761, 917
BccI	CCATC	3 cut(s)	419, 809, 920
BciVI	GTATCC	1 cut(s)	597
BclI	TGATCA	1 cut(s)	694
BcoDI	GTCTC	1 cut(s)	938
BfaI	CTAG	2 cut(s)	378, 786
BfuAI	ACCTGC	1 cut(s)	899
BfuI	GTATCC	1 cut(s)	597
BglI	GCCNNNNNGGC	1 cut(s)	966
BisI	GCNGC	3 cut(s)	775, 906, 961
BlsI	GCNGC	3 cut(s)	776, 907, 962
Bme18I	GGWCC	1 cut(s)	550
BmgBI	CACGTC	1 cut(s)	806
BmgT120I	GGNCC	1 cut(s)	550
BmiI	GGNNCC	3 cut(s)	210, 592, 951
BmsI	GCATC	1 cut(s)	739
BoxI	GACNNNNGTC	1 cut(s)	755
BpuEI	CTTGAG	1 cut(s)	207
BsaJI	CCNNGG	1 cut(s)	798
Bsc4I	CCNNNNNNNGG	4 cut(s)	308, 505, 600, 799
Bse118I	RCCGGY	1 cut(s)	965
Bse1I	ACTGG	1 cut(s)	892
Bse3DI	GCAATG	3 cut(s)	198, 348, 976
BseDI	CCNNGG	1 cut(s)	798
BseGI	GGATG	2 cut(s)	352, 730
BseLI	CCNNNNNNNGG	4 cut(s)	308, 505, 600, 799
BseMI	GCAATG	3 cut(s)	198, 348, 976
BseNI	ACTGG	1 cut(s)	892
BseSI	GKGCMC	2 cut(s)	830, 954
BseXI	GCAGC	2 cut(s)	761, 917
BseYI	CCCAGC	2 cut(s)	416, 941
Bsh1236I	CGCG	2 cut(s)	542, 963
BshFI	GGCC	1 cut(s)	312
BshNI	GGYRCC	1 cut(s)	949
BsiHKAI	GWGCWC	1 cut(s)	830
BsiSI	CCGG	1 cut(s)	966
BslFI	GGGAC	1 cut(s)	816
BslI	CCNNNNNNNGG	4 cut(s)	308, 505, 600, 799
BsmAI	GTCTC	1 cut(s)	938
BsmFI	GGGAC	1 cut(s)	816
BsnI	GGCC	1 cut(s)	312
Bsp1286I	GDGCHC	2 cut(s)	830, 954
Bsp143I	GATC	4 cut(s)	297, 694, 745, 976
BspACI	CCGC	1 cut(s)	961
BspANI	GGCC	1 cut(s)	312
BspFNI	CGCG	2 cut(s)	542, 963
BspLI	GGNNCC	3 cut(s)	210, 592, 951
BspMI	ACCTGC	1 cut(s)	899
BspPI	GGATC	2 cut(s)	292, 971
BspT107I	GGYRCC	1 cut(s)	949
BsrDI	GCAATG	3 cut(s)	198, 348, 976
BsrFI	RCCGGY	1 cut(s)	965
BsrI	ACTGG	1 cut(s)	892
BssAI	RCCGGY	1 cut(s)	965
BssECI	CCNNGG	1 cut(s)	798
BssMI	GATC	4 cut(s)	297, 694, 745, 976
BssT1I	CCWWGG	1 cut(s)	798
Bst4CI	ACNGT	1 cut(s)	626
BstC8I	GCNNGC	1 cut(s)	967
BstDEI	CTNAG	1 cut(s)	51
BstF5I	GGATG	2 cut(s)	352, 730
BstFNI	CGCG	2 cut(s)	542, 963
BstHHI	GCGC	2 cut(s)	544, 965
BstKTI	GATC	4 cut(s)	300, 697, 748, 979
BstMAI	GTCTC	1 cut(s)	938
BstMBI	GATC	4 cut(s)	297, 694, 745, 976
BstMWI	GCNNNNNNNGC	2 cut(s)	825, 966
BstNSI	RCATGY	2 cut(s)	323, 459
BstPAI	GACNNNNGTC	1 cut(s)	755
BstSLI	GKGCMC	2 cut(s)	830, 954
BstUI	CGCG	2 cut(s)	542, 963
BstV1I	GCAGC	2 cut(s)	761, 917
BstX2I	RGATCY	1 cut(s)	297
BstXI	CCANNNNNNTGG	1 cut(s)	409
BstYI	RGATCY	1 cut(s)	297
BsuI	GTATCC	1 cut(s)	597
BsuRI	GGCC	1 cut(s)	312
BtrI	CACGTC	1 cut(s)	806
BtsCI	GGATG	2 cut(s)	352, 730
BtsIMutI	CAGTG	1 cut(s)	885
BveI	ACCTGC	1 cut(s)	899
Cac8I	GCNNGC	1 cut(s)	967
CfoI	GCGC	2 cut(s)	544, 965
Cfr10I	RCCGGY	1 cut(s)	965
Cfr13I	GGNCC	1 cut(s)	550
CviAII	CATG	9 cut(s)	77, 179, 320, 409, 456, 526, 568, 778, 794
CviJI	RGCY	9 cut(s)	168, 209, 292, 312, 385, 405, 495, 593, 930
CviKI_1	RGCY	9 cut(s)	168, 209, 292, 312, 385, 405, 495, 593, 930
DdeI	CTNAG	1 cut(s)	51
DpnI	GATC	4 cut(s)	299, 696, 747, 978
DpnII	GATC	4 cut(s)	297, 694, 745, 976
DraIII	CACNNNGTG	1 cut(s)	329
EaeI	YGGCCR	1 cut(s)	310
Eco130I	CCWWGG	1 cut(s)	798
Eco32I	GATATC	1 cut(s)	451
Eco47I	GGWCC	1 cut(s)	550
Eco57I	CTGAAG	1 cut(s)	63
EcoRV	GATATC	1 cut(s)	451
EcoT14I	CCWWGG	1 cut(s)	798
EcoT22I	ATGCAT	1 cut(s)	531
ErhI	CCWWGG	1 cut(s)	798
FaeI	CATG	9 cut(s)	80, 182, 323, 412, 459, 529, 571, 781, 797
FalI	AAGNNNNNCTT	2 cut(s)	188, 220
FaqI	GGGAC	1 cut(s)	816
FatI	CATG	9 cut(s)	76, 178, 319, 408, 455, 525, 567, 777, 793
FauNDI	CATATG	3 cut(s)	21, 648, 754
FbaI	TGATCA	1 cut(s)	694
Fnu4HI	GCNGC	3 cut(s)	775, 906, 961
FokI	GGATG	2 cut(s)	359, 717
Fsp4HI	GCNGC	3 cut(s)	775, 906, 961
FspBI	CTAG	2 cut(s)	378, 786
GlaI	GCGC	2 cut(s)	543, 964
GluI	GCNGC	3 cut(s)	775, 906, 961
GsaI	CCCAGC	2 cut(s)	420, 945
HaeIII	GGCC	1 cut(s)	312
HapII	CCGG	1 cut(s)	966
HhaI	GCGC	2 cut(s)	544, 965
Hin1II	CATG	9 cut(s)	80, 182, 323, 412, 459, 529, 571, 781, 797
Hin6I	GCGC	2 cut(s)	542, 963
HinP1I	GCGC	2 cut(s)	542, 963
HinfI	GANTC	5 cut(s)	25, 118, 142, 398, 789
HpaII	CCGG	1 cut(s)	966
HphI	GGTGA	1 cut(s)	121
Hpy166II	GTNNAC	1 cut(s)	828
Hpy188I	TCNGA	3 cut(s)	360, 603, 750
Hpy188III	TCNNGA	2 cut(s)	301, 760
Hpy8I	GTNNAC	1 cut(s)	828
HpyAV	CCTTC	4 cut(s)	7, 122, 604, 874
HpyCH4III	ACNGT	1 cut(s)	626
HpyCH4IV	ACGT	2 cut(s)	805, 915
HpyCH4V	TGCA	9 cut(s)	279, 323, 341, 463, 529, 571, 652, 777, 828
HpyF10VI	GCNNNNNNNGC	2 cut(s)	825, 966
HpyF3I	CTNAG	1 cut(s)	51
HpySE526I	ACGT	2 cut(s)	805, 915
Hsp92II	CATG	9 cut(s)	80, 182, 323, 412, 459, 529, 571, 781, 797
HspAI	GCGC	2 cut(s)	542, 963
KroI	GCCGGC	1 cut(s)	965
KroNI	GCCGGC	1 cut(s)	967
Ksp22I	TGATCA	1 cut(s)	694
Kzo9I	GATC	4 cut(s)	297, 694, 745, 976
LmnI	GCTCC	3 cut(s)	16, 214, 590
LpnPI	CCDG	8 cut(s)	243, 387, 402, 415, 873, 894, 955, 979
Lsp1109I	GCAGC	2 cut(s)	761, 917
LweI	GCATC	1 cut(s)	739
MaeI	CTAG	2 cut(s)	378, 786
MaeII	ACGT	2 cut(s)	805, 915
MaeIII	GTNAC	4 cut(s)	46, 620, 883, 911
MalI	GATC	4 cut(s)	299, 696, 747, 978
MboI	GATC	4 cut(s)	297, 694, 745, 976
MboII	GAAGA	1 cut(s)	208
MflI	RGATCY	1 cut(s)	297
MhlI	GDGCHC	2 cut(s)	830, 954
MlsI	TGGCCA	1 cut(s)	312
MluCI	AATT	5 cut(s)	154, 314, 354, 685, 719
MluNI	TGGCCA	1 cut(s)	312
MlyI	GAGTC	3 cut(s)	151, 407, 798
MnlI	CCTC	6 cut(s)	100, 343, 437, 486, 653, 940
Mox20I	TGGCCA	1 cut(s)	312
Mph1103I	ATGCAT	1 cut(s)	531
MroNI	GCCGGC	1 cut(s)	965
MscI	TGGCCA	1 cut(s)	312
MseI	TTAA	2 cut(s)	267, 873
Msp20I	TGGCCA	1 cut(s)	312
MspI	CCGG	1 cut(s)	966
MvnI	CGCG	2 cut(s)	542, 963
MwoI	GCNNNNNNNGC	2 cut(s)	825, 966
NaeI	GCCGGC	1 cut(s)	967
NdeI	CATATG	3 cut(s)	21, 648, 754
NdeII	GATC	4 cut(s)	297, 694, 745, 976
NgoMIV	GCCGGC	1 cut(s)	965
NlaIII	CATG	9 cut(s)	80, 182, 323, 412, 459, 529, 571, 781, 797
NlaIV	GGNNCC	3 cut(s)	210, 592, 951
NmuCI	GTSAC	3 cut(s)	46, 620, 883
NsiI	ATGCAT	1 cut(s)	531
NspI	RCATGY	2 cut(s)	323, 459
PdiI	GCCGGC	1 cut(s)	967
PfeI	GAWTC	2 cut(s)	25, 118
PkrI	GCNGC	3 cut(s)	776, 907, 962
PleI	GAGTC	3 cut(s)	150, 406, 797
PpsI	GAGTC	3 cut(s)	150, 406, 797
PshAI	GACNNNNGTC	1 cut(s)	755
PspFI	CCCAGC	2 cut(s)	416, 941
PspN4I	GGNNCC	3 cut(s)	210, 592, 951
PspPI	GGNCC	1 cut(s)	550
PsuI	RGATCY	1 cut(s)	297
SaqAI	TTAA	2 cut(s)	267, 873
SatI	GCNGC	3 cut(s)	775, 906, 961
Sau3AI	GATC	4 cut(s)	297, 694, 745, 976
Sau96I	GGNCC	1 cut(s)	550
SchI	GAGTC	3 cut(s)	151, 407, 798
SduI	GDGCHC	2 cut(s)	830, 954
SfaNI	GCATC	1 cut(s)	739
SinI	GGWCC	1 cut(s)	550
SmlI	CTYRAG	1 cut(s)	222
SmoI	CTYRAG	1 cut(s)	222
Sse9I	AATT	5 cut(s)	154, 314, 354, 685, 719
SsiI	CCGC	1 cut(s)	961
SspI	AATATT	1 cut(s)	34
SspMI	CTAG	2 cut(s)	378, 786
StyI	CCWWGG	1 cut(s)	798
TaaI	ACNGT	1 cut(s)	626
TaiI	ACGT	2 cut(s)	808, 918
TaqI	TCGA	3 cut(s)	442, 483, 561
TasI	AATT	5 cut(s)	154, 314, 354, 685, 719
TauI	GCSGC	1 cut(s)	963
TfiI	GAWTC	2 cut(s)	25, 118
Tru1I	TTAA	2 cut(s)	267, 873
Tru9I	TTAA	2 cut(s)	267, 873
TscAI	CASTG	1 cut(s)	892
TseFI	GTSAC	3 cut(s)	46, 620, 883
TseI	GCWGC	2 cut(s)	774, 905
Tsp45I	GTSAC	3 cut(s)	46, 620, 883
TspDTI	ATGAA	6 cut(s)	26, 93, 101, 209, 556, 863
TspRI	CASTG	1 cut(s)	892
VneI	GTGCAC	1 cut(s)	826
VpaK11BI	GGWCC	1 cut(s)	550
XapI	RAATTY	1 cut(s)	354
XceI	RCATGY	2 cut(s)	323, 459
XspI	CTAG	2 cut(s)	378, 786
Zsp2I	ATGCAT	1 cut(s)	531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.