Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0005564

Physical Location & Seq

Genomic Coordinates Forward (+)

62072696 .. 62073470

Gene Structure 775 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010044

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGAGAATGCTACAATTCTTCACCACTTTCTCAGTGGGACTGTTGAGATTTCAATTTCTGAATCCAAGCTAACCTTGTATAGACTACCACTTGCGCCTATTTCATTAGCAAAGGGTACCAAAAAGGCCCAAAAGACAAAGAATGAGCTAAGAGAAAAGGCAAAGCTCAGGGCTGTGGAAACAAAGAAAAAAAGGGACGCAAATAAGGCTGCATCAAAGGCAACTTTTAGACTTGCTCCAAACAAAGGTAGACCACCAAAAGCTGCTGCTTCAAGAATAAAGCTGCACCTTCACAAGCTTCATCAAGGTCATCTAGCTATGAGGATTAGAGAGAATGCAAAGACTGGTGCAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DBD_Tnp_Mut MULE SWIM

Protein Analysis

119

Amino Acids

13.11

Weight (kDa)

11.0

Isoelectric Point (pI)

28.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005564)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000001694 RLG00000001803 RLG00000007893 RLG00000010044 RLG00000022360 RLG00000022941 RLG00000028365
rosa_multiflora	Rmu_sc0011772.1_g000001
rosa_roxburghii	Rroxscaffold_4G00316120 Rroxscaffold_7G00214530
rosa_rugosa	Rorug01G0267700 Rorug04G0149900
rosa_samantha	Rh1AG047500 Rh1DG148500 Rh1DG259400 Rh1DG276600 Rh1DG373800 Rh2AG039100 Rh2AG317500 Rh2AG317600 Rh2BG325800 Rh2BG325900 Rh2BG326000 Rh2CG318200 Rh2CG318300 Rh2CG318400 Rh3CG274500 Rh3CG354900
rosa_wichuraiana	Rw2G025690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	116
AccB1I	GGYRCC	1 cut(s)	116
AccI	GTMKAC	1 cut(s)	250
AfaI	GTAC	1 cut(s)	118
AfiI	CCNNNNNNNGG	1 cut(s)	245
AgsI	TTSAA	2 cut(s)	54, 273
AluBI	AGCT	7 cut(s)	70, 148, 166, 263, 283, 298, 317
AluI	AGCT	7 cut(s)	70, 148, 166, 263, 283, 298, 317
AoxI	GGCC	1 cut(s)	126
ApeKI	GCWGC	4 cut(s)	209, 263, 266, 283
Asp718I	GGTACC	1 cut(s)	116
AspLEI	GCGC	1 cut(s)	97
AspS9I	GGNCC	1 cut(s)	127
AsuHPI	GGTGA	1 cut(s)	14
BanI	GGYRCC	1 cut(s)	116
BbvI	GCAGC	4 cut(s)	196, 250, 253, 270
BfaI	CTAG	1 cut(s)	314
BisI	GCNGC	4 cut(s)	210, 264, 267, 284
BlsI	GCNGC	4 cut(s)	211, 265, 268, 285
BmgT120I	GGNCC	1 cut(s)	127
BmiI	GGNNCC	1 cut(s)	118
BmsI	GCATC	1 cut(s)	221
Bpu10I	CCTNAGC	1 cut(s)	167
Bsc4I	CCNNNNNNNGG	1 cut(s)	245
Bse1I	ACTGG	1 cut(s)	349
BseLI	CCNNNNNNNGG	1 cut(s)	245
BseMII	CTCAG	2 cut(s)	46, 181
BseNI	ACTGG	1 cut(s)	349
BseXI	GCAGC	4 cut(s)	196, 250, 253, 270
BsgI	GTGCAG	1 cut(s)	269
BshFI	GGCC	1 cut(s)	128
BshNI	GGYRCC	1 cut(s)	116
BslFI	GGGAC	2 cut(s)	52, 209
BslI	CCNNNNNNNGG	1 cut(s)	245
BsmFI	GGGAC	2 cut(s)	52, 209
BsmI	GAATGC	2 cut(s)	13, 340
BsnI	GGCC	1 cut(s)	128
BspANI	GGCC	1 cut(s)	128
BspCNI	CTCAG	2 cut(s)	45, 180
BspLI	GGNNCC	1 cut(s)	118
BspT107I	GGYRCC	1 cut(s)	116
BsrI	ACTGG	1 cut(s)	349
Bst4CI	ACNGT	1 cut(s)	43
BstDEI	CTNAG	3 cut(s)	32, 149, 167
BstHHI	GCGC	1 cut(s)	97
BstMWI	GCNNNNNNNGC	2 cut(s)	206, 218
BstV1I	GCAGC	4 cut(s)	196, 250, 253, 270
BsuRI	GGCC	1 cut(s)	128
BtsIMutI	CAGTG	1 cut(s)	40
CfoI	GCGC	1 cut(s)	97
Cfr13I	GGNCC	1 cut(s)	127
CseI	GACGC	1 cut(s)	206
Csp6I	GTAC	1 cut(s)	117
CviQI	GTAC	1 cut(s)	117
DdeI	CTNAG	3 cut(s)	32, 149, 167
FaiI	YATR	2 cut(s)	81, 320
FalI	AAGNNNNNCTT	2 cut(s)	59, 91
FaqI	GGGAC	2 cut(s)	52, 209
FblI	GTMKAC	1 cut(s)	250
Fnu4HI	GCNGC	4 cut(s)	210, 264, 267, 284
Fsp4HI	GCNGC	4 cut(s)	210, 264, 267, 284
FspBI	CTAG	1 cut(s)	314
GlaI	GCGC	1 cut(s)	96
GluI	GCNGC	4 cut(s)	210, 264, 267, 284
HaeIII	GGCC	1 cut(s)	128
HgaI	GACGC	1 cut(s)	206
HhaI	GCGC	1 cut(s)	97
Hin6I	GCGC	1 cut(s)	95
HinP1I	GCGC	1 cut(s)	95
HindIII	AAGCTT	1 cut(s)	296
HinfI	GANTC	1 cut(s)	62
HphI	GGTGA	1 cut(s)	14
Hpy166II	GTNNAC	1 cut(s)	251
Hpy188I	TCNGA	1 cut(s)	61
Hpy188III	TCNNGA	1 cut(s)	273
Hpy8I	GTNNAC	1 cut(s)	251
HpyAV	CCTTC	1 cut(s)	299
HpyCH4III	ACNGT	1 cut(s)	43
HpyCH4V	TGCA	4 cut(s)	212, 286, 338, 350
HpyF10VI	GCNNNNNNNGC	2 cut(s)	206, 218
HpyF3I	CTNAG	3 cut(s)	32, 149, 167
HspAI	GCGC	1 cut(s)	95
KpnI	GGTACC	1 cut(s)	120
LmnI	GCTCC	1 cut(s)	241
LpnPI	CCDG	2 cut(s)	154, 330
Lsp1109I	GCAGC	4 cut(s)	196, 250, 253, 270
LweI	GCATC	1 cut(s)	221
MaeI	CTAG	1 cut(s)	314
MboII	GAAGA	1 cut(s)	11
MluCI	AATT	2 cut(s)	15, 54
MnlI	CCTC	1 cut(s)	315
Mva1269I	GAATGC	2 cut(s)	13, 340
MwoI	GCNNNNNNNGC	2 cut(s)	206, 218
NlaIV	GGNNCC	1 cut(s)	118
PctI	GAATGC	2 cut(s)	13, 340
PfeI	GAWTC	1 cut(s)	62
PkrI	GCNGC	4 cut(s)	211, 265, 268, 285
PspN4I	GGNNCC	1 cut(s)	118
PspPI	GGNCC	1 cut(s)	127
RsaI	GTAC	1 cut(s)	118
RsaNI	GTAC	1 cut(s)	117
SatI	GCNGC	4 cut(s)	210, 264, 267, 284
Sau96I	GGNCC	1 cut(s)	127
SfaNI	GCATC	1 cut(s)	221
SgeI	CNNG	9 cut(s)	79, 88, 104, 181, 245, 285, 307, 317, 326
Sse9I	AATT	2 cut(s)	15, 54
SspMI	CTAG	1 cut(s)	314
TaaI	ACNGT	1 cut(s)	43
TasI	AATT	2 cut(s)	15, 54
TfiI	GAWTC	1 cut(s)	62
TscAI	CASTG	1 cut(s)	40
TseI	GCWGC	4 cut(s)	209, 263, 266, 283
TspDTI	ATGAA	2 cut(s)	93, 290
TspRI	CASTG	1 cut(s)	40
XcmI	CCANNNNNNNNNTGG	1 cut(s)	32
XmiI	GTMKAC	1 cut(s)	250
XspI	CTAG	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.