Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0005564

Physical Location & Seq

Genomic Coordinates Reverse (-)

39801696 .. 39802695

Gene Structure 1000 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG325800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGAAGAATAACTTGGCTCCCACAAAAACTCAAGCACCTGTGCGTGTCCTATTTCCCCAAAGCAACAATAGTGTTAATCCAAAGTGCAAGAAGCAAAAGCCAAAGATCCCGAATGTTGGCCAATTACATGCACCAAGTGGTATCTCTGCAATGGATGAGGAAATTCTGAACTTCCTTTTCCCTGCTAGTCAGCTAACTGCTGATGAGTCCAGCTACATGGTTGCTGGGTGTGATGGGTTTCTCATAAATCGAGGCGATATCGCATGTTTGCAACCACAAACCCCTCTACTCGATGATGTCATTAATGTTATGGCTGCTTACATATATGAAAGACACTCTCTCTCTTGGTTCTTCCCTACCCATTTTGGTAACTCGCGCATTTGGACCAATGGTTCGAGTTCATGCACTTCACTCTTATCAATGGAGCCTTCAATCGGATACAAGACAACACTTGTGACTGTGGGATATATGTTATACATCATATGCAAAATGGAGGTTCTGCTTGGCGATTTGGGTTCAACTCTGCTGATCAGCGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

179

Amino Acids

19.65

Weight (kDa)

6.8

Isoelectric Point (pI)

47.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005564)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000001694 RLG00000001803 RLG00000007893 RLG00000010044 RLG00000022360 RLG00000022941 RLG00000028365
rosa_multiflora	Rmu_sc0011772.1_g000001
rosa_roxburghii	Rroxscaffold_4G00316120 Rroxscaffold_7G00214530
rosa_rugosa	Rorug01G0267700 Rorug04G0149900
rosa_samantha	Rh1AG047500 Rh1DG148500 Rh1DG259400 Rh1DG276600 Rh1DG373800 Rh2AG039100 Rh2AG317500 Rh2AG317600 Rh2BG325800 Rh2BG325900 Rh2BG326000 Rh2CG318200 Rh2CG318300 Rh2CG318400 Rh3CG274500 Rh3CG354900
rosa_wichuraiana	Rw2G025690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	376
AclWI	GGATC	1 cut(s)	100
AcoI	YGGCCR	1 cut(s)	118
AcsI	RAATTY	1 cut(s)	162
AdeI	CACNNNGTG	1 cut(s)	137
AfiI	CCNNNNNNNGG	2 cut(s)	116, 434
AgsI	TTSAA	2 cut(s)	432, 519
AjuI	GAANNNNNNNTTGG	1 cut(s)	28
AloI	GAACNNNNNNTCC	2 cut(s)	376, 408
AluBI	AGCT	2 cut(s)	193, 213
AluI	AGCT	2 cut(s)	193, 213
AlwI	GGATC	1 cut(s)	100
AoxI	GGCC	1 cut(s)	118
ApeKI	GCWGC	1 cut(s)	314
ApoI	RAATTY	1 cut(s)	162
ArsI	GACNNNNNNTTYG	2 cut(s)	376, 408
AseI	ATTAAT	1 cut(s)	303
AspLEI	GCGC	1 cut(s)	378
AspS9I	GGNCC	1 cut(s)	384
AvaII	GGWCC	1 cut(s)	384
BalI	TGGCCA	1 cut(s)	120
BbvI	GCAGC	1 cut(s)	301
BccI	CCATC	1 cut(s)	227
BciVI	GTATCC	1 cut(s)	431
BclI	TGATCA	1 cut(s)	528
BfaI	CTAG	1 cut(s)	186
BfuI	GTATCC	1 cut(s)	431
BisI	GCNGC	1 cut(s)	315
BlsI	GCNGC	1 cut(s)	316
Bme18I	GGWCC	1 cut(s)	384
BmgT120I	GGNCC	1 cut(s)	384
BmiI	GGNNCC	2 cut(s)	18, 426
BpuEI	CTTGAG	1 cut(s)	15
Bsc4I	CCNNNNNNNGG	2 cut(s)	116, 434
Bse3DI	GCAATG	1 cut(s)	156
BseGI	GGATG	1 cut(s)	160
BseLI	CCNNNNNNNGG	2 cut(s)	116, 434
BseMI	GCAATG	1 cut(s)	156
BseXI	GCAGC	1 cut(s)	301
BseYI	CCCAGC	1 cut(s)	224
Bsh1236I	CGCG	1 cut(s)	376
BshFI	GGCC	1 cut(s)	120
BslI	CCNNNNNNNGG	2 cut(s)	116, 434
BsnI	GGCC	1 cut(s)	120
Bsp143I	GATC	2 cut(s)	105, 528
BspANI	GGCC	1 cut(s)	120
BspFNI	CGCG	1 cut(s)	376
BspLI	GGNNCC	2 cut(s)	18, 426
BspPI	GGATC	1 cut(s)	100
BsrDI	GCAATG	1 cut(s)	156
BssMI	GATC	2 cut(s)	105, 528
Bst4CI	ACNGT	1 cut(s)	460
BstF5I	GGATG	1 cut(s)	160
BstFNI	CGCG	1 cut(s)	376
BstHHI	GCGC	1 cut(s)	378
BstKTI	GATC	2 cut(s)	108, 531
BstMBI	GATC	2 cut(s)	105, 528
BstNSI	RCATGY	2 cut(s)	131, 267
BstUI	CGCG	1 cut(s)	376
BstV1I	GCAGC	1 cut(s)	301
BstX2I	RGATCY	1 cut(s)	105
BstXI	CCANNNNNNTGG	1 cut(s)	217
BstYI	RGATCY	1 cut(s)	105
BsuI	GTATCC	1 cut(s)	431
BsuRI	GGCC	1 cut(s)	120
BtsCI	GGATG	1 cut(s)	160
CfoI	GCGC	1 cut(s)	378
Cfr13I	GGNCC	1 cut(s)	384
CviAII	CATG	4 cut(s)	128, 217, 264, 402
CviJI	RGCY	7 cut(s)	17, 100, 120, 193, 213, 314, 427
CviKI_1	RGCY	7 cut(s)	17, 100, 120, 193, 213, 314, 427
DpnI	GATC	2 cut(s)	107, 530
DpnII	GATC	2 cut(s)	105, 528
DraIII	CACNNNGTG	1 cut(s)	137
EaeI	YGGCCR	1 cut(s)	118
Eco32I	GATATC	1 cut(s)	259
Eco47I	GGWCC	1 cut(s)	384
EcoRV	GATATC	1 cut(s)	259
FaeI	CATG	4 cut(s)	131, 220, 267, 405
FalI	AAGNNNNNCTT	1 cut(s)	28
FatI	CATG	4 cut(s)	127, 216, 263, 401
FauNDI	CATATG	1 cut(s)	482
FbaI	TGATCA	1 cut(s)	528
Fnu4HI	GCNGC	1 cut(s)	315
FokI	GGATG	1 cut(s)	167
Fsp4HI	GCNGC	1 cut(s)	315
FspBI	CTAG	1 cut(s)	186
GlaI	GCGC	1 cut(s)	377
GluI	GCNGC	1 cut(s)	315
GsaI	CCCAGC	1 cut(s)	228
HaeIII	GGCC	1 cut(s)	120
HhaI	GCGC	1 cut(s)	378
Hin1II	CATG	4 cut(s)	131, 220, 267, 405
Hin6I	GCGC	1 cut(s)	376
HinP1I	GCGC	1 cut(s)	376
HinfI	GANTC	1 cut(s)	206
Hpy188I	TCNGA	2 cut(s)	168, 437
Hpy188III	TCNNGA	1 cut(s)	109
HpyAV	CCTTC	1 cut(s)	438
HpyCH4III	ACNGT	1 cut(s)	460
HpyCH4V	TGCA	6 cut(s)	87, 131, 149, 271, 405, 486
Hsp92II	CATG	4 cut(s)	131, 220, 267, 405
HspAI	GCGC	1 cut(s)	376
Ksp22I	TGATCA	1 cut(s)	528
Kzo9I	GATC	2 cut(s)	105, 528
LmnI	GCTCC	2 cut(s)	22, 424
LpnPI	CCDG	4 cut(s)	51, 195, 210, 223
Lsp1109I	GCAGC	1 cut(s)	301
MaeI	CTAG	1 cut(s)	186
MaeIII	GTNAC	2 cut(s)	368, 454
MalI	GATC	2 cut(s)	107, 530
MboI	GATC	2 cut(s)	105, 528
MboII	GAAGA	2 cut(s)	16, 343
MflI	RGATCY	1 cut(s)	105
MlsI	TGGCCA	1 cut(s)	120
MluCI	AATT	2 cut(s)	122, 162
MluNI	TGGCCA	1 cut(s)	120
MlyI	GAGTC	1 cut(s)	215
MnlI	CCTC	4 cut(s)	151, 245, 294, 487
Mox20I	TGGCCA	1 cut(s)	120
MscI	TGGCCA	1 cut(s)	120
MseI	TTAA	2 cut(s)	75, 303
Msp20I	TGGCCA	1 cut(s)	120
MvnI	CGCG	1 cut(s)	376
NdeI	CATATG	1 cut(s)	482
NdeII	GATC	2 cut(s)	105, 528
NlaIII	CATG	4 cut(s)	131, 220, 267, 405
NlaIV	GGNNCC	2 cut(s)	18, 426
NmuCI	GTSAC	1 cut(s)	454
NspI	RCATGY	2 cut(s)	131, 267
PkrI	GCNGC	1 cut(s)	316
PleI	GAGTC	1 cut(s)	214
PpsI	GAGTC	1 cut(s)	214
PshBI	ATTAAT	1 cut(s)	303
PspFI	CCCAGC	1 cut(s)	224
PspN4I	GGNNCC	2 cut(s)	18, 426
PspPI	GGNCC	1 cut(s)	384
PsuI	RGATCY	1 cut(s)	105
SaqAI	TTAA	2 cut(s)	75, 303
SatI	GCNGC	1 cut(s)	315
Sau3AI	GATC	2 cut(s)	105, 528
Sau96I	GGNCC	1 cut(s)	384
SchI	GAGTC	1 cut(s)	215
SetI	ASST	4 cut(s)	40, 195, 215, 498
SinI	GGWCC	1 cut(s)	384
SmlI	CTYRAG	1 cut(s)	30
SmoI	CTYRAG	1 cut(s)	30
Sse9I	AATT	2 cut(s)	122, 162
SspMI	CTAG	1 cut(s)	186
TaaI	ACNGT	1 cut(s)	460
TaqI	TCGA	3 cut(s)	250, 291, 395
TasI	AATT	2 cut(s)	122, 162
Tru1I	TTAA	2 cut(s)	75, 303
Tru9I	TTAA	2 cut(s)	75, 303
TseFI	GTSAC	1 cut(s)	454
TseI	GCWGC	1 cut(s)	314
Tsp45I	GTSAC	1 cut(s)	454
TspDTI	ATGAA	3 cut(s)	17, 342, 390
VpaK11BI	GGWCC	1 cut(s)	384
VspI	ATTAAT	1 cut(s)	303
XapI	RAATTY	1 cut(s)	162
XceI	RCATGY	2 cut(s)	131, 267
XspI	CTAG	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.