Rh2CG318400

protein desumoylation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0005564
Physical Location & Seq
Forward (+)
40745245 .. 40746213
969 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG318400.1

Sequence Viewer

Length: 639 bp
ATGATCAATGGGTTGAGTACACAAGATCAACATGCCGCCTTGATCGATTTTAGGGGACATCAATTGGGGCTAGCAAGATATAGGCAAGCTGTGCTGTACGACAGCCTCCCCACTGATGAGTCCACAGACAGTCGTCGCGTCATTGCCAAGACTGTTTTGAGGCACCTTGATAGGGTCTTTGCTAACGACATCATGCATATGGAACTCGTGCATTTGGACCAATGGTTCGAGTTTAGGCACTTCACTCTTATCAATGGAGCCTTCAATCCGATACAAGACAACACTTGTGACTGTGGGATATATGTTATACGTCATATGCAAAATGGAGGTTCTACTTGGCGATTTGGGTTCAACTCAGCTGATCAGCGTGTGAAACTTGCTTTGGAATTAGTGAAGCATCCTAAGAACATAGATCAGGCATATGTCTTCAATAACATGCGCTGCATACGGCCTAGGGTCCTCACTAGTGGACGTGTAGGAGATGGCGATATGTGCACAGATACTTCTGGTTTTATGAAAACTCCAAAGAGCAACAATGCTAAAAAGAAGGTGACTGGAAACAGGAAAAGGGCAGCTGGTAACGTGGAGAATGGCCGTCTCAATCCCAGCAAGGTGCGCTGTATGCCGCCCCGACGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48

Protein Analysis

212

Amino Acids

24.19

Weight (kDa)

9.88

Isoelectric Point (pI)

28.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 162
AccII CGCG 1 cut(s) 138
AciI CCGC 2 cut(s) 36, 626
AcoI YGGCCR 1 cut(s) 592
AfaI GTAC 2 cut(s) 19, 98
AfiI CCNNNNNNNGG 1 cut(s) 172
AflIII ACRYGT 1 cut(s) 472
AgsI TTSAA 3 cut(s) 265, 352, 430
AhlI ACTAGT 1 cut(s) 464
AjiI CACGTC 1 cut(s) 473
AjuI GAANNNNNNNTTGG 2 cut(s) 365, 397
AloI GAACNNNNNNTCC 2 cut(s) 209, 241
AluBI AGCT 3 cut(s) 89, 359, 575
AluI AGCT 3 cut(s) 89, 359, 575
Alw21I GWGCWC 1 cut(s) 497
Alw26I GTCTC 1 cut(s) 602
Alw44I GTGCAC 1 cut(s) 493
AoxI GGCC 2 cut(s) 449, 592
ApaLI GTGCAC 1 cut(s) 493
ApeKI GCWGC 2 cut(s) 441, 572
ArsI GACNNNNNNTTYG 2 cut(s) 209, 241
AspA2I CCTAGG 1 cut(s) 452
AspLEI GCGC 2 cut(s) 441, 618
AspS9I GGNCC 2 cut(s) 217, 457
AsuHPI GGTGA 1 cut(s) 562
AsuNHI GCTAGC 1 cut(s) 70
AvaII GGWCC 2 cut(s) 217, 457
AvrII CCTAGG 1 cut(s) 452
BaeGI GKGCMC 1 cut(s) 497
BanI GGYRCC 1 cut(s) 162
BauI CACGAG 1 cut(s) 206
BbsI GAAGAC 1 cut(s) 418
Bbv12I GWGCWC 1 cut(s) 497
BbvI GCAGC 2 cut(s) 428, 584
BccI CCATC 1 cut(s) 476
BceAI ACGGC 2 cut(s) 464, 579
BclI TGATCA 2 cut(s) 3, 361
BcoDI GTCTC 1 cut(s) 602
BcuI ACTAGT 1 cut(s) 464
BfaI CTAG 3 cut(s) 71, 453, 465
BisI GCNGC 4 cut(s) 36, 442, 573, 626
BlnI CCTAGG 1 cut(s) 452
BlsI GCNGC 4 cut(s) 37, 443, 574, 627
Bme18I GGWCC 2 cut(s) 217, 457
BmgBI CACGTC 1 cut(s) 473
BmgT120I GGNCC 2 cut(s) 217, 457
BmiI GGNNCC 3 cut(s) 164, 259, 458
BmsI GCATC 1 cut(s) 406
BmtI GCTAGC 1 cut(s) 74
BoxI GACNNNNGTC 1 cut(s) 132
BpiI GAAGAC 1 cut(s) 418
Bsa29I ATCGAT 1 cut(s) 45
BsaJI CCNNGG 1 cut(s) 452
Bsc4I CCNNNNNNNGG 1 cut(s) 172
Bse1I ACTGG 1 cut(s) 559
Bse3DI GCAATG 1 cut(s) 141
BseCI ATCGAT 1 cut(s) 45
BseDI CCNNGG 1 cut(s) 452
BseGI GGATG 1 cut(s) 397
BseLI CCNNNNNNNGG 1 cut(s) 172
BseMI GCAATG 1 cut(s) 141
BseMII CTCAG 1 cut(s) 369
BseNI ACTGG 1 cut(s) 559
BseSI GKGCMC 1 cut(s) 497
BseXI GCAGC 2 cut(s) 428, 584
BseYI CCCAGC 1 cut(s) 605
Bsh1236I CGCG 1 cut(s) 138
BshFI GGCC 2 cut(s) 451, 594
BshNI GGYRCC 1 cut(s) 162
BshVI ATCGAT 1 cut(s) 45
BsiHKAI GWGCWC 1 cut(s) 497
BslFI GGGAC 1 cut(s) 69
BslI CCNNNNNNNGG 1 cut(s) 172
BsmAI GTCTC 1 cut(s) 602
BsmBI CGTCTC 1 cut(s) 602
BsmFI GGGAC 1 cut(s) 69
BsnI GGCC 2 cut(s) 451, 594
Bsp1286I GDGCHC 1 cut(s) 497
Bsp143I GATC 5 cut(s) 3, 25, 42, 361, 412
BspACI CCGC 2 cut(s) 36, 626
BspANI GGCC 2 cut(s) 451, 594
BspCNI CTCAG 1 cut(s) 368
BspDI ATCGAT 1 cut(s) 45
BspFNI CGCG 1 cut(s) 138
BspLI GGNNCC 3 cut(s) 164, 259, 458
BspOI GCTAGC 1 cut(s) 74
BspT107I GGYRCC 1 cut(s) 162
BsrDI GCAATG 1 cut(s) 141
BsrI ACTGG 1 cut(s) 559
BssECI CCNNGG 1 cut(s) 452
BssMI GATC 5 cut(s) 3, 25, 42, 361, 412
BssSI CACGAG 1 cut(s) 206
BssT1I CCWWGG 1 cut(s) 452
Bst2BI CACGAG 1 cut(s) 206
Bst4CI ACNGT 3 cut(s) 131, 154, 293
BstAPI GCANNNNNTGC 1 cut(s) 91
BstC8I GCNNGC 2 cut(s) 72, 87
BstDEI CTNAG 2 cut(s) 355, 402
BstF5I GGATG 1 cut(s) 397
BstFNI CGCG 1 cut(s) 138
BstHHI GCGC 2 cut(s) 441, 618
BstKTI GATC 5 cut(s) 6, 28, 45, 364, 415
BstMAI GTCTC 1 cut(s) 602
BstMBI GATC 5 cut(s) 3, 25, 42, 361, 412
BstMWI GCNNNNNNNGC 4 cut(s) 91, 492, 615, 622
BstNSI RCATGY 2 cut(s) 35, 439
BstPAI GACNNNNGTC 1 cut(s) 132
BstSLI GKGCMC 1 cut(s) 497
BstUI CGCG 1 cut(s) 138
BstV1I GCAGC 2 cut(s) 428, 584
BstV2I GAAGAC 1 cut(s) 418
Bsu15I ATCGAT 1 cut(s) 45
BsuRI GGCC 2 cut(s) 451, 594
BsuTUI ATCGAT 1 cut(s) 45
BtrI CACGTC 1 cut(s) 473
BtsCI GGATG 1 cut(s) 397
BtsIMutI CAGTG 1 cut(s) 111
Cac8I GCNNGC 2 cut(s) 72, 87
CfoI GCGC 2 cut(s) 441, 618
Cfr13I GGNCC 2 cut(s) 217, 457
ClaI ATCGAT 1 cut(s) 45
CseI GACGC 1 cut(s) 127
Csp6I GTAC 2 cut(s) 18, 97
CviAII CATG 3 cut(s) 32, 193, 436
CviJI RGCY 8 cut(s) 70, 89, 105, 260, 359, 451, 575, 594
CviKI_1 RGCY 8 cut(s) 70, 89, 105, 260, 359, 451, 575, 594
CviQI GTAC 2 cut(s) 18, 97
DdeI CTNAG 2 cut(s) 355, 402
DpnI GATC 5 cut(s) 5, 27, 44, 363, 414
DpnII GATC 5 cut(s) 3, 25, 42, 361, 412
EaeI YGGCCR 1 cut(s) 592
Eco130I CCWWGG 1 cut(s) 452
Eco47I GGWCC 2 cut(s) 217, 457
EcoO109I RGGNCCY 1 cut(s) 457
EcoT14I CCWWGG 1 cut(s) 452
EcoT22I ATGCAT 1 cut(s) 198
ErhI CCWWGG 1 cut(s) 452
Esp3I CGTCTC 1 cut(s) 602
FaeI CATG 3 cut(s) 35, 196, 439
FaqI GGGAC 1 cut(s) 69
FatI CATG 3 cut(s) 31, 192, 435
FauNDI CATATG 3 cut(s) 198, 315, 421
FbaI TGATCA 2 cut(s) 3, 361
Fnu4HI GCNGC 4 cut(s) 36, 442, 573, 626
FokI GGATG 1 cut(s) 384
Fsp4HI GCNGC 4 cut(s) 36, 442, 573, 626
FspBI CTAG 3 cut(s) 71, 453, 465
GlaI GCGC 2 cut(s) 440, 617
GluI GCNGC 4 cut(s) 36, 442, 573, 626
GsaI CCCAGC 1 cut(s) 609
HaeIII GGCC 2 cut(s) 451, 594
HgaI GACGC 1 cut(s) 127
HhaI GCGC 2 cut(s) 441, 618
Hin1II CATG 3 cut(s) 35, 196, 439
Hin6I GCGC 2 cut(s) 439, 616
HinP1I GCGC 2 cut(s) 439, 616
HinfI GANTC 1 cut(s) 119
HphI GGTGA 1 cut(s) 562
Hpy166II GTNNAC 4 cut(s) 20, 123, 470, 495
Hpy188I TCNGA 1 cut(s) 270
Hpy8I GTNNAC 4 cut(s) 20, 123, 470, 495
Hpy99I CGWCG 2 cut(s) 138, 636
HpyAV CCTTC 2 cut(s) 271, 541
HpyCH4III ACNGT 3 cut(s) 131, 154, 293
HpyCH4IV ACGT 3 cut(s) 310, 472, 582
HpyCH4V TGCA 5 cut(s) 196, 211, 319, 444, 495
HpyF10VI GCNNNNNNNGC 4 cut(s) 91, 492, 615, 622
HpyF3I CTNAG 2 cut(s) 355, 402
HpySE526I ACGT 3 cut(s) 310, 472, 582
Hsp92II CATG 3 cut(s) 35, 196, 439
HspAI GCGC 2 cut(s) 439, 616
Ksp22I TGATCA 2 cut(s) 3, 361
Kzo9I GATC 5 cut(s) 3, 25, 42, 361, 412
LmnI GCTCC 1 cut(s) 257
LpnPI CCDG 6 cut(s) 401, 492, 540, 547, 561, 619
Lsp1109I GCAGC 2 cut(s) 428, 584
LweI GCATC 1 cut(s) 406
MaeI CTAG 3 cut(s) 71, 453, 465
MaeII ACGT 3 cut(s) 310, 472, 582
MaeIII GTNAC 3 cut(s) 287, 550, 578
MalI GATC 5 cut(s) 5, 27, 44, 363, 414
MboI GATC 5 cut(s) 3, 25, 42, 361, 412
MboII GAAGA 1 cut(s) 418
MfeI CAATTG 1 cut(s) 62
MhlI GDGCHC 1 cut(s) 497
MluCI AATT 2 cut(s) 62, 386
MlyI GAGTC 1 cut(s) 128
MnlI CCTC 4 cut(s) 116, 153, 320, 470
Mph1103I ATGCAT 1 cut(s) 198
MslI CAYNNNNRTG 1 cut(s) 197
MspA1I CMGCKG 2 cut(s) 359, 575
MunI CAATTG 1 cut(s) 62
MvnI CGCG 1 cut(s) 138
MwoI GCNNNNNNNGC 4 cut(s) 91, 492, 615, 622
NdeI CATATG 3 cut(s) 198, 315, 421
NdeII GATC 5 cut(s) 3, 25, 42, 361, 412
NheI GCTAGC 1 cut(s) 70
NlaIII CATG 3 cut(s) 35, 196, 439
NlaIV GGNNCC 3 cut(s) 164, 259, 458
NmuCI GTSAC 2 cut(s) 287, 550
NsiI ATGCAT 1 cut(s) 198
NspI RCATGY 2 cut(s) 35, 439
PkrI GCNGC 4 cut(s) 37, 443, 574, 627
PleI GAGTC 1 cut(s) 127
PpsI GAGTC 1 cut(s) 127
PpuMI RGGWCCY 1 cut(s) 457
PshAI GACNNNNGTC 1 cut(s) 132
Psp5II RGGWCCY 1 cut(s) 457
PspFI CCCAGC 1 cut(s) 605
PspN4I GGNNCC 3 cut(s) 164, 259, 458
PspPI GGNCC 2 cut(s) 217, 457
PspPPI RGGWCCY 1 cut(s) 457
PvuII CAGCTG 2 cut(s) 359, 575
RsaI GTAC 2 cut(s) 19, 98
RsaNI GTAC 2 cut(s) 18, 97
RseI CAYNNNNRTG 1 cut(s) 197
SatI GCNGC 4 cut(s) 36, 442, 573, 626
Sau3AI GATC 5 cut(s) 3, 25, 42, 361, 412
Sau96I GGNCC 2 cut(s) 217, 457
SchI GAGTC 1 cut(s) 128
SduI GDGCHC 1 cut(s) 497
SfaNI GCATC 1 cut(s) 406
SinI GGWCC 2 cut(s) 217, 457
SmiMI CAYNNNNRTG 1 cut(s) 197
SpeI ACTAGT 1 cut(s) 464
Sse9I AATT 2 cut(s) 62, 386
SsiI CCGC 2 cut(s) 36, 626
SspMI CTAG 3 cut(s) 71, 453, 465
StyI CCWWGG 1 cut(s) 452
TaaI ACNGT 3 cut(s) 131, 154, 293
TaiI ACGT 3 cut(s) 313, 475, 585
TaqI TCGA 2 cut(s) 45, 228
TasI AATT 2 cut(s) 62, 386
TatI WGTACW 1 cut(s) 17
TauI GCSGC 2 cut(s) 38, 628
TscAI CASTG 1 cut(s) 118
TseFI GTSAC 2 cut(s) 287, 550
TseI GCWGC 2 cut(s) 441, 572
Tsp45I GTSAC 2 cut(s) 287, 550
TspDTI ATGAA 1 cut(s) 530
TspRI CASTG 1 cut(s) 118
VneI GTGCAC 1 cut(s) 493
VpaK11BI GGWCC 2 cut(s) 217, 457
XceI RCATGY 2 cut(s) 35, 439
XmaJI CCTAGG 1 cut(s) 452
XspI CTAG 3 cut(s) 71, 453, 465
Zsp2I ATGCAT 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.