Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0005564

Physical Location & Seq

Genomic Coordinates Reverse (-)

15481220 .. 15485285

Gene Structure 4066 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022941

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGAATTCTCATGCAGGCCAATTGTCCAGGATTGCAAACTTCTGTCATGATCTGCAGGTCCTGGACCTAGCAAAAGCTTCAGGGTCATCGGAAGGTACTGGTAAGAAAAAGGCTACCAAGACAAAGAATCAGTTAAGGCAGAAGGCAAGGGAAAGGGCAGAAGTACTAAAGAAAAAAAGGGATGAGAAGAAGATTGCCACAGTTAGAGCTGCTCCAACAAATGCAAGAGCTGCTCATTCTGCAAATGCAAGAGCTGCTGCTGCTTCAAACTCAAAAGCTGCTCCTGTTTCGAGCTCAAGAGATACTCCTTCACGCTCAAAAGCAACTGCTACAAAAGGTACAGCTCCTGTTTCAAGCTCTAGAGCCTCTGCAAAACCCACTAAATCATTAAAGAGGCTTAGAGAAAGTGGAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

139

Amino Acids

14.55

Weight (kDa)

11.42

Isoelectric Point (pI)

39.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005564)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000001694 RLG00000001803 RLG00000007893 RLG00000010044 RLG00000022360 RLG00000022941 RLG00000028365
rosa_multiflora	Rmu_sc0011772.1_g000001
rosa_roxburghii	Rroxscaffold_4G00316120 Rroxscaffold_7G00214530
rosa_rugosa	Rorug01G0267700 Rorug04G0149900
rosa_samantha	Rh1AG047500 Rh1DG148500 Rh1DG259400 Rh1DG276600 Rh1DG373800 Rh2AG039100 Rh2AG317500 Rh2AG317600 Rh2BG325800 Rh2BG325900 Rh2BG326000 Rh2CG318200 Rh2CG318300 Rh2CG318400 Rh3CG274500 Rh3CG354900
rosa_wichuraiana	Rw2G025690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	46
AcsI	RAATTY	1 cut(s)	4
AcuI	CTGAAG	1 cut(s)	63
AfaI	GTAC	3 cut(s)	97, 165, 340
AgsI	TTSAA	2 cut(s)	267, 354
AjnI	CCWGG	2 cut(s)	26, 60
AluBI	AGCT	8 cut(s)	77, 209, 230, 254, 278, 294, 344, 357
AluI	AGCT	8 cut(s)	77, 209, 230, 254, 278, 294, 344, 357
Alw21I	GWGCWC	1 cut(s)	296
AlwNI	CAGNNNCTG	2 cut(s)	61, 347
AoxI	GGCC	1 cut(s)	16
ApeKI	GCWGC	6 cut(s)	209, 230, 254, 257, 260, 278
ApoI	RAATTY	1 cut(s)	4
AspS9I	GGNCC	2 cut(s)	58, 64
AvaII	GGWCC	2 cut(s)	58, 64
BanII	GRGCYC	1 cut(s)	296
Bbv12I	GWGCWC	1 cut(s)	296
BbvI	GCAGC	6 cut(s)	196, 217, 241, 244, 247, 265
BciT130I	CCWGG	2 cut(s)	28, 62
BfaI	CTAG	2 cut(s)	68, 360
BfmI	CTRYAG	1 cut(s)	53
BfuAI	ACCTGC	1 cut(s)	46
BisI	GCNGC	6 cut(s)	210, 231, 255, 258, 261, 279
BlsI	GCNGC	6 cut(s)	211, 232, 256, 259, 262, 280
BmcAI	AGTACT	1 cut(s)	165
Bme1390I	CCNGG	2 cut(s)	28, 62
Bme18I	GGWCC	2 cut(s)	58, 64
BmgT120I	GGNCC	2 cut(s)	58, 64
BmrFI	CCNGG	2 cut(s)	28, 62
BpuEI	CTTGAG	1 cut(s)	280
Bse1I	ACTGG	1 cut(s)	103
BseBI	CCWGG	2 cut(s)	28, 62
BseGI	GGATG	1 cut(s)	187
BseNI	ACTGG	1 cut(s)	103
BseXI	GCAGC	6 cut(s)	196, 217, 241, 244, 247, 265
BshFI	GGCC	1 cut(s)	18
BsiHKAI	GWGCWC	1 cut(s)	296
BsnI	GGCC	1 cut(s)	18
Bsp1286I	GDGCHC	1 cut(s)	296
Bsp143I	GATC	1 cut(s)	49
BspANI	GGCC	1 cut(s)	18
BspHI	TCATGA	1 cut(s)	46
BspMAI	CTGCAG	1 cut(s)	57
BspMI	ACCTGC	1 cut(s)	46
BsrI	ACTGG	1 cut(s)	103
BssMI	GATC	1 cut(s)	49
Bst2UI	CCWGG	2 cut(s)	28, 62
Bst4CI	ACNGT	1 cut(s)	202
BstAPI	GCANNNNNTGC	2 cut(s)	230, 254
BstC8I	GCNNGC	1 cut(s)	16
BstDEI	CTNAG	1 cut(s)	398
BstF5I	GGATG	1 cut(s)	187
BstKTI	GATC	1 cut(s)	52
BstMBI	GATC	1 cut(s)	49
BstMWI	GCNNNNNNNGC	4 cut(s)	230, 239, 254, 260
BstNI	CCWGG	2 cut(s)	28, 62
BstSCI	CCNGG	2 cut(s)	26, 60
BstSFI	CTRYAG	1 cut(s)	53
BstV1I	GCAGC	6 cut(s)	196, 217, 241, 244, 247, 265
BsuRI	GGCC	1 cut(s)	18
BtsCI	GGATG	1 cut(s)	187
BveI	ACCTGC	1 cut(s)	46
Cac8I	GCNNGC	1 cut(s)	16
CaiI	CAGNNNCTG	2 cut(s)	61, 347
CciI	TCATGA	1 cut(s)	46
Cfr13I	GGNCC	2 cut(s)	58, 64
Csp6I	GTAC	3 cut(s)	96, 164, 339
CviAII	CATG	2 cut(s)	11, 47
CviQI	GTAC	3 cut(s)	96, 164, 339
DdeI	CTNAG	1 cut(s)	398
DpnI	GATC	1 cut(s)	51
DpnII	GATC	1 cut(s)	49
Ecl136II	GAGCTC	1 cut(s)	294
Eco24I	GRGCYC	1 cut(s)	296
Eco47I	GGWCC	2 cut(s)	58, 64
Eco53kI	GAGCTC	1 cut(s)	294
Eco57I	CTGAAG	1 cut(s)	63
EcoICRI	GAGCTC	1 cut(s)	294
EcoO109I	RGGNCCY	1 cut(s)	58
EcoRI	GAATTC	1 cut(s)	4
EcoRII	CCWGG	2 cut(s)	26, 60
EcoT38I	GRGCYC	1 cut(s)	296
FaeI	CATG	2 cut(s)	14, 50
FaiI	YATR	2 cut(s)	12, 48
FatI	CATG	2 cut(s)	10, 46
Fnu4HI	GCNGC	6 cut(s)	210, 231, 255, 258, 261, 279
FokI	GGATG	1 cut(s)	194
FriOI	GRGCYC	1 cut(s)	296
Fsp4HI	GCNGC	6 cut(s)	210, 231, 255, 258, 261, 279
FspBI	CTAG	2 cut(s)	68, 360
GluI	GCNGC	6 cut(s)	210, 231, 255, 258, 261, 279
HaeIII	GGCC	1 cut(s)	18
Hin1II	CATG	2 cut(s)	14, 50
HindIII	AAGCTT	1 cut(s)	75
HinfI	GANTC	1 cut(s)	127
Hpy188I	TCNGA	1 cut(s)	91
Hpy188III	TCNNGA	3 cut(s)	47, 297, 360
HpyAV	CCTTC	3 cut(s)	86, 136, 318
HpyCH4III	ACNGT	1 cut(s)	202
HpyCH4V	TGCA	7 cut(s)	14, 35, 55, 224, 242, 248, 371
HpyF10VI	GCNNNNNNNGC	4 cut(s)	230, 239, 254, 260
HpyF3I	CTNAG	1 cut(s)	398
Hsp92II	CATG	2 cut(s)	14, 50
Kzo9I	GATC	1 cut(s)	49
LmnI	GCTCC	3 cut(s)	217, 286, 349
LpnPI	CCDG	9 cut(s)	13, 40, 41, 47, 66, 74, 84, 297, 360
Lsp1109I	GCAGC	6 cut(s)	196, 217, 241, 244, 247, 265
MaeI	CTAG	2 cut(s)	68, 360
MalI	GATC	1 cut(s)	51
MboI	GATC	1 cut(s)	49
MboII	GAAGA	2 cut(s)	199, 202
MfeI	CAATTG	1 cut(s)	20
MhlI	GDGCHC	1 cut(s)	296
MluCI	AATT	2 cut(s)	4, 20
MmeI	TCCRAC	1 cut(s)	239
MnlI	CCTC	2 cut(s)	376, 387
MseI	TTAA	2 cut(s)	134, 389
MspR9I	CCNGG	2 cut(s)	28, 62
MunI	CAATTG	1 cut(s)	20
MvaI	CCWGG	2 cut(s)	28, 62
MwoI	GCNNNNNNNGC	4 cut(s)	230, 239, 254, 260
NdeII	GATC	1 cut(s)	49
NlaIII	CATG	2 cut(s)	14, 50
PagI	TCATGA	1 cut(s)	46
PfeI	GAWTC	1 cut(s)	127
PfoI	TCCNGGA	2 cut(s)	26, 60
PkrI	GCNGC	6 cut(s)	211, 232, 256, 259, 262, 280
PpuMI	RGGWCCY	1 cut(s)	58
Psp124BI	GAGCTC	1 cut(s)	296
Psp5II	RGGWCCY	1 cut(s)	58
Psp6I	CCWGG	2 cut(s)	26, 60
PspGI	CCWGG	2 cut(s)	26, 60
PspPI	GGNCC	2 cut(s)	58, 64
PspPPI	RGGWCCY	1 cut(s)	58
PstI	CTGCAG	1 cut(s)	57
PstNI	CAGNNNCTG	2 cut(s)	61, 347
RsaI	GTAC	3 cut(s)	97, 165, 340
RsaNI	GTAC	3 cut(s)	96, 164, 339
SacI	GAGCTC	1 cut(s)	296
SaqAI	TTAA	2 cut(s)	134, 389
SatI	GCNGC	6 cut(s)	210, 231, 255, 258, 261, 279
Sau3AI	GATC	1 cut(s)	49
Sau96I	GGNCC	2 cut(s)	58, 64
ScaI	AGTACT	1 cut(s)	165
ScrFI	CCNGG	2 cut(s)	28, 62
SduI	GDGCHC	1 cut(s)	296
SfcI	CTRYAG	1 cut(s)	53
SinI	GGWCC	2 cut(s)	58, 64
SmlI	CTYRAG	1 cut(s)	295
SmoI	CTYRAG	1 cut(s)	295
Sse9I	AATT	2 cut(s)	4, 20
SspMI	CTAG	2 cut(s)	68, 360
SstI	GAGCTC	1 cut(s)	296
StyD4I	CCNGG	2 cut(s)	26, 60
TaaI	ACNGT	1 cut(s)	202
TaqI	TCGA	1 cut(s)	290
TasI	AATT	2 cut(s)	4, 20
TatI	WGTACW	1 cut(s)	163
TfiI	GAWTC	1 cut(s)	127
Tru1I	TTAA	2 cut(s)	134, 389
Tru9I	TTAA	2 cut(s)	134, 389
TseI	GCWGC	6 cut(s)	209, 230, 254, 257, 260, 278
TspDTI	ATGAA	1 cut(s)	17
VpaK11BI	GGWCC	2 cut(s)	58, 64
XapI	RAATTY	1 cut(s)	4
XbaI	TCTAGA	1 cut(s)	359
XspI	CTAG	2 cut(s)	68, 360
ZrmI	AGTACT	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.