FvH4_4g14740

Stem-specific protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0012211
Physical Location & Seq
Forward (+)
18403128 .. 18406534
3407 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g14740.t1

Sequence Viewer

Length: 720 bp
ATGTTGGGAGTGTTCAGCAGCGAGATCGTGTCGCCGCCCGACGAGCTGGTCGCCGCCGGCAGCCGCACCCCTTCGCCGAAGATCACGGCGAATGCGCTGATCAACCGCTTCTGCCAGAGCAATGCCTCCGCCGTCTCCGTGCAGGTCGGCGACCACGTCCAGCTGGCCTACAGCCACGACAACGAGTCCGTGATACAACCGAGGTCATTTGCTGTTAAGGATGAGATATTCTGCTTGTTTGAGGGAGCACTTGACAACTTGGGGAGCTTGAGGCAGCAGTATGGCCTAGCCAAGTCTGCAAATGAAGTGATTTTGGTCATTGAGGCTTACAAGGCGCTTCGTGATCGGGCACCTTACCCACCAAACCATGTTGTTGGCCATCTCAGCGGAAATTTTGCTTTCATTGTATTTGACAAGTCCACTTCCACCTTGTTTGTTGCTTCCGACCAATTTGGCAAGGTGCCTCTGTCTTGGGGAATCACTGCTGATGGATATGTGGCCTTTGCTGATGATGCAGACTTGCTTAAGGGTGCTTGTGGCAAGTCACTTGCTTCATTCCCTCAAGGGTGTTTCTACTCCACAACTGTTGGAGGACTGAGAAGCTATGAGAATCCCAAAAATGTGATCACTGCTGTACCTGCTACTGATGAAGAGATCTGGGGTGCAACATTTAAGTTTTCACAGTCACAGTCGCACTCGAGCGAAATTGAAGGCGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3700

Protein Analysis

240

Amino Acids

25.58

Weight (kDa)

5.06

Isoelectric Point (pI)

44.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3700 PF12481 2 - 225 4.1e-92 Aluminium induced protein
GATase_6 PF13522 52 - 170 4.4e-11 Glutamine amidotransferase domain
GATase_7 PF13537 54 - 171 3.7e-11 Glutamine amidotransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012211)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19140 AT5G19140 AT5G19140
fragaria_vesca FvH4_4g14740 FvH4_4g14740
malus_domestica MD13G1185100.v1.1 MD16G1185700.v1.1
prunus_persica Prupe.1G152400_v2.0.a1 Prupe.1G152400_v2.0.a1
pyrus_communis pycom13g15970 pycom16g15550
rosa_chinensis RchiOBHm_Chr4g0417861
rosa_laevigata RLG00000007892
rosa_multiflora Rmu_sc0004911.1_g000008
rosa_roxburghii Rroxscaffold_5G00361280
rosa_rugosa Rorug04G0149900
rosa_samantha Rh4BG218800 Rh4DG210100
rosa_wichuraiana Rw4G018000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 47
Acc36I ACCTGC 2 cut(s) 133, 646
AccB1I GGYRCC 2 cut(s) 349, 460
AciI CCGC 7 cut(s) 35, 54, 64, 106, 129, 387, 714
AcoI YGGCCR 1 cut(s) 376
AcsI RAATTY 1 cut(s) 391
AfaI GTAC 1 cut(s) 636
AflII CTTAAG 1 cut(s) 524
AgsI TTSAA 1 cut(s) 710
AhdI GACNNNNNGTC 1 cut(s) 184
AjiI CACGTC 1 cut(s) 157
AluBI AGCT 4 cut(s) 46, 163, 267, 603
AluI AGCT 4 cut(s) 46, 163, 267, 603
Alw21I GWGCWC 1 cut(s) 250
Alw26I GTCTC 1 cut(s) 139
Ama87I CYCGRG 1 cut(s) 697
AoxI GGCC 4 cut(s) 165, 283, 376, 498
ApeKI GCWGC 3 cut(s) 18, 60, 274
ApoI RAATTY 1 cut(s) 391
AspLEI GCGC 2 cut(s) 97, 337
AvaI CYCGRG 1 cut(s) 697
BaeGI GKGCMC 1 cut(s) 352
BaeI ACNNNNGTAYC 2 cut(s) 618, 651
BalI TGGCCA 1 cut(s) 378
BanI GGYRCC 2 cut(s) 349, 460
Bbv12I GWGCWC 1 cut(s) 250
BbvI GCAGC 3 cut(s) 30, 72, 286
BccI CCATC 2 cut(s) 387, 482
BceAI ACGGC 2 cut(s) 102, 116
BcgI CGANNNNNNTGC 2 cut(s) 7, 41
BclI TGATCA 2 cut(s) 99, 624
BcoDI GTCTC 1 cut(s) 139
BfaI CTAG 1 cut(s) 287
BfmI CTRYAG 1 cut(s) 169
BfoI RGCGCY 1 cut(s) 338
BfrI CTTAAG 1 cut(s) 524
BfuAI ACCTGC 2 cut(s) 133, 646
BglII AGATCT 1 cut(s) 654
BisI GCNGC 6 cut(s) 19, 35, 54, 61, 64, 275
BlsI GCNGC 6 cut(s) 20, 36, 55, 62, 65, 276
BmeRI GACNNNNNGTC 1 cut(s) 184
BmeT110I CYCGRG 1 cut(s) 697
BmgBI CACGTC 1 cut(s) 157
BmiI GGNNCC 2 cut(s) 351, 462
BmsI GCATC 1 cut(s) 502
BpuEI CTTGAG 2 cut(s) 289, 546
BsaJI CCNNGG 1 cut(s) 200
Bse118I RCCGGY 1 cut(s) 56
Bse3DI GCAATG 1 cut(s) 127
BseDI CCNNGG 1 cut(s) 200
BseGI GGATG 1 cut(s) 226
BseMI GCAATG 1 cut(s) 127
BseMII CTCAG 2 cut(s) 397, 587
BseSI GKGCMC 1 cut(s) 352
BseXI GCAGC 3 cut(s) 30, 72, 286
BsgI GTGCAG 1 cut(s) 161
BshFI GGCC 4 cut(s) 167, 285, 378, 500
BshNI GGYRCC 2 cut(s) 349, 460
BsiHKAI GWGCWC 1 cut(s) 250
BsiHKCI CYCGRG 1 cut(s) 697
BsiSI CCGG 1 cut(s) 57
BsmAI GTCTC 1 cut(s) 139
BsmBI CGTCTC 1 cut(s) 139
BsmI GAATGC 1 cut(s) 97
BsnI GGCC 4 cut(s) 167, 285, 378, 500
BsoBI CYCGRG 1 cut(s) 697
Bsp1286I GDGCHC 2 cut(s) 250, 352
Bsp143I GATC 6 cut(s) 24, 81, 99, 343, 624, 654
BspACI CCGC 7 cut(s) 35, 54, 64, 106, 129, 387, 714
BspANI GGCC 4 cut(s) 167, 285, 378, 500
BspCNI CTCAG 2 cut(s) 396, 588
BspLI GGNNCC 2 cut(s) 351, 462
BspMI ACCTGC 2 cut(s) 133, 646
BspT107I GGYRCC 2 cut(s) 349, 460
BspTI CTTAAG 1 cut(s) 524
BsrDI GCAATG 1 cut(s) 127
BsrFI RCCGGY 1 cut(s) 56
BssAI RCCGGY 1 cut(s) 56
BssECI CCNNGG 1 cut(s) 200
BssMI GATC 6 cut(s) 24, 81, 99, 343, 624, 654
Bst4CI ACNGT 3 cut(s) 586, 684, 690
Bst6I CTCTTC 1 cut(s) 645
BstAFI CTTAAG 1 cut(s) 524
BstC8I GCNNGC 2 cut(s) 58, 165
BstDEI CTNAG 2 cut(s) 383, 596
BstF5I GGATG 1 cut(s) 226
BstH2I RGCGCY 1 cut(s) 338
BstHHI GCGC 2 cut(s) 97, 337
BstKTI GATC 6 cut(s) 27, 84, 102, 346, 627, 657
BstMAI GTCTC 1 cut(s) 139
BstMBI GATC 6 cut(s) 24, 81, 99, 343, 624, 654
BstMWI GCNNNNNNNGC 6 cut(s) 43, 296, 332, 384, 512, 638
BstSFI CTRYAG 1 cut(s) 169
BstSLI GKGCMC 1 cut(s) 352
BstV1I GCAGC 3 cut(s) 30, 72, 286
BstX2I RGATCY 1 cut(s) 654
BstXI CCANNNNNNTGG 1 cut(s) 374
BstYI RGATCY 1 cut(s) 654
BsuRI GGCC 4 cut(s) 167, 285, 378, 500
BtrI CACGTC 1 cut(s) 157
BtsCI GGATG 1 cut(s) 226
BtsI GCAGTG 2 cut(s) 480, 627
BtsIMutI CAGTG 2 cut(s) 480, 627
BveI ACCTGC 2 cut(s) 133, 646
Cac8I GCNNGC 2 cut(s) 58, 165
CfoI GCGC 2 cut(s) 97, 337
Cfr10I RCCGGY 1 cut(s) 56
Csp6I GTAC 1 cut(s) 635
CspCI CAANNNNNGTGG 4 cut(s) 415, 450, 568, 603
CviAII CATG 1 cut(s) 368
CviQI GTAC 1 cut(s) 635
DdeI CTNAG 2 cut(s) 383, 596
DpnI GATC 6 cut(s) 26, 83, 101, 345, 626, 656
DpnII GATC 6 cut(s) 24, 81, 99, 343, 624, 654
DrdI GACNNNNNNGTC 1 cut(s) 47
DriI GACNNNNNGTC 1 cut(s) 184
DseDI GACNNNNNNGTC 1 cut(s) 47
EaeI YGGCCR 1 cut(s) 376
Eam1104I CTCTTC 1 cut(s) 645
Eam1105I GACNNNNNGTC 1 cut(s) 184
EarI CTCTTC 1 cut(s) 645
EciI GGCGGA 1 cut(s) 118
Eco88I CYCGRG 1 cut(s) 697
Esp3I CGTCTC 1 cut(s) 139
FaeI CATG 1 cut(s) 371
FaiI YATR 4 cut(s) 282, 369, 495, 606
FatI CATG 1 cut(s) 367
FbaI TGATCA 2 cut(s) 99, 624
Fnu4HI GCNGC 6 cut(s) 19, 35, 54, 61, 64, 275
FokI GGATG 1 cut(s) 233
Fsp4HI GCNGC 6 cut(s) 19, 35, 54, 61, 64, 275
FspBI CTAG 1 cut(s) 287
GlaI GCGC 2 cut(s) 96, 336
GluI GCNGC 6 cut(s) 19, 35, 54, 61, 64, 275
HaeII RGCGCY 1 cut(s) 338
HaeIII GGCC 4 cut(s) 167, 285, 378, 500
HapII CCGG 1 cut(s) 57
HhaI GCGC 2 cut(s) 97, 337
Hin1II CATG 1 cut(s) 371
Hin6I GCGC 2 cut(s) 95, 335
HinP1I GCGC 2 cut(s) 95, 335
HinfI GANTC 3 cut(s) 185, 477, 610
HpaII CCGG 1 cut(s) 57
Hpy166II GTNNAC 1 cut(s) 420
Hpy188I TCNGA 1 cut(s) 445
Hpy188III TCNNGA 1 cut(s) 341
Hpy8I GTNNAC 1 cut(s) 420
Hpy99I CGWCG 1 cut(s) 44
HpyAV CCTTC 2 cut(s) 81, 704
HpyCH4III ACNGT 3 cut(s) 586, 684, 690
HpyCH4IV ACGT 1 cut(s) 156
HpyCH4V TGCA 4 cut(s) 142, 299, 515, 665
HpyF10VI GCNNNNNNNGC 6 cut(s) 43, 296, 332, 384, 512, 638
HpyF3I CTNAG 2 cut(s) 383, 596
HpySE526I ACGT 1 cut(s) 156
Hsp92II CATG 1 cut(s) 371
HspAI GCGC 2 cut(s) 95, 335
KroI GCCGGC 1 cut(s) 56
KroNI GCCGGC 1 cut(s) 58
Ksp22I TGATCA 2 cut(s) 99, 624
Kzo9I GATC 6 cut(s) 24, 81, 99, 343, 624, 654
LmnI GCTCC 2 cut(s) 245, 264
LpnPI CCDG 8 cut(s) 32, 70, 128, 128, 149, 173, 643, 651
Lsp1109I GCAGC 3 cut(s) 30, 72, 286
LweI GCATC 1 cut(s) 502
MaeI CTAG 1 cut(s) 287
MaeII ACGT 1 cut(s) 156
MaeIII GTNAC 2 cut(s) 543, 684
MalI GATC 6 cut(s) 26, 83, 101, 345, 626, 656
MboI GATC 6 cut(s) 24, 81, 99, 343, 624, 654
MboII GAAGA 2 cut(s) 91, 662
MflI RGATCY 1 cut(s) 654
MhlI GDGCHC 2 cut(s) 250, 352
MlsI TGGCCA 1 cut(s) 378
MluCI AATT 3 cut(s) 391, 449, 705
MluNI TGGCCA 1 cut(s) 378
MlyI GAGTC 1 cut(s) 194
MmeI TCCRAC 2 cut(s) 468, 568
MnlI CCTC 8 cut(s) 136, 195, 235, 264, 316, 474, 570, 584
Mox20I TGGCCA 1 cut(s) 378
MroNI GCCGGC 1 cut(s) 56
MscI TGGCCA 1 cut(s) 378
MseI TTAA 3 cut(s) 216, 525, 672
Msp20I TGGCCA 1 cut(s) 378
MspA1I CMGCKG 2 cut(s) 163, 387
MspCI CTTAAG 1 cut(s) 524
MspI CCGG 1 cut(s) 57
Mva1269I GAATGC 1 cut(s) 97
MwoI GCNNNNNNNGC 6 cut(s) 43, 296, 332, 384, 512, 638
NaeI GCCGGC 1 cut(s) 58
NdeII GATC 6 cut(s) 24, 81, 99, 343, 624, 654
NgoMIV GCCGGC 1 cut(s) 56
NlaIII CATG 1 cut(s) 371
NlaIV GGNNCC 2 cut(s) 351, 462
NmuCI GTSAC 2 cut(s) 543, 684
PaeR7I CTCGAG 1 cut(s) 697
PcsI WCGNNNNNNNCGW 1 cut(s) 153
PctI GAATGC 1 cut(s) 97
PdiI GCCGGC 1 cut(s) 58
PfeI GAWTC 2 cut(s) 477, 610
PflFI GACNNNGTC 1 cut(s) 155
PkrI GCNGC 6 cut(s) 20, 36, 55, 62, 65, 276
PleI GAGTC 1 cut(s) 193
PpsI GAGTC 1 cut(s) 193
PspN4I GGNNCC 2 cut(s) 351, 462
PspXI VCTCGAGB 1 cut(s) 697
PsuI RGATCY 1 cut(s) 654
PsyI GACNNNGTC 1 cut(s) 155
PvuII CAGCTG 1 cut(s) 163
RsaI GTAC 1 cut(s) 636
RsaNI GTAC 1 cut(s) 635
SaqAI TTAA 3 cut(s) 216, 525, 672
SatI GCNGC 6 cut(s) 19, 35, 54, 61, 64, 275
Sau3AI GATC 6 cut(s) 24, 81, 99, 343, 624, 654
SchI GAGTC 1 cut(s) 194
SduI GDGCHC 2 cut(s) 250, 352
SfaNI GCATC 1 cut(s) 502
SfcI CTRYAG 1 cut(s) 169
Sfr274I CTCGAG 1 cut(s) 697
SlaI CTCGAG 1 cut(s) 697
SmlI CTYRAG 4 cut(s) 268, 524, 561, 697
SmoI CTYRAG 4 cut(s) 268, 524, 561, 697
Sse9I AATT 3 cut(s) 391, 449, 705
SsiI CCGC 7 cut(s) 35, 54, 64, 106, 129, 387, 714
SspMI CTAG 1 cut(s) 287
TaaI ACNGT 3 cut(s) 586, 684, 690
TaiI ACGT 1 cut(s) 159
TaqI TCGA 1 cut(s) 698
TasI AATT 3 cut(s) 391, 449, 705
TauI GCSGC 3 cut(s) 37, 56, 66
TfiI GAWTC 2 cut(s) 477, 610
Tru1I TTAA 3 cut(s) 216, 525, 672
Tru9I TTAA 3 cut(s) 216, 525, 672
TscAI CASTG 2 cut(s) 487, 634
TseFI GTSAC 2 cut(s) 543, 684
TseI GCWGC 3 cut(s) 18, 60, 274
Tsp45I GTSAC 2 cut(s) 543, 684
TspDTI ATGAA 4 cut(s) 318, 391, 543, 663
TspGWI ACGGA 2 cut(s) 127, 178
TspRI CASTG 2 cut(s) 487, 634
Tth111I GACNNNGTC 1 cut(s) 155
Vha464I CTTAAG 1 cut(s) 524
XapI RAATTY 1 cut(s) 391
XhoI CTCGAG 1 cut(s) 697
XspI CTAG 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.