pycom13g15970

Stem-specific protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0012211
Physical Location & Seq
Forward (+)
11749700 .. 11762003
12304 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g15970.2

Sequence Viewer

Length: 711 bp
ATGTTGGCTGTTTTCAGCAGCGCGATCGTGTCGCCGCCAGACGAGTTGGTGGCCGCTGGCAGCCGAACTCCGTCGCCGAAGACCACGGCGGCGTCGCTAGTCAACCGCTTCGTCCAGACAAATGTCGCCGCCGTCTCCATACAAGTCGGCGACGACGCTCAGCTGGCCTACAGTCACAGCAACGAGTCACCGTTACAGCCTAGGTCATTTGCAGTGAAGGATGAGATATTCTGCTTGTTTGAGGGAGCACTTGACAACTTGGGAAGTTTGAGGCAGCAATATGGACTAGCCAAGTCTGCAAATGAAGTGATTTTGGTGATCGAGGCTTACAAGGCCCTGCGCGATCGCGCGCCTTACCCGCCAAACCATGTTGTTGGCCACCTCAGTGGAAACTTTGCTTTCATAGTATTTGACAAGTCCACGTCAACCGTGTTTGTGGCATCTGACCAATTTGGCAAGATTCCGCTCTCGTGGGGAATTACTGCTGATGGATATGTGGCCTTTGCTGATGATGTAGAACTGCTTAAGGGTGCTTGTGGCAAGTCGCTTGCTTCATTCCCGCAAGGATGTTTCTACTCCACGACGGTTGGAGGACTGAGAAGCTTTGAGAATCCTAAAAGTAAGATCACTGCTGTGCCTGCTACTGATGAAGAGATATGGGGTGCAACATTTAAGGTGGAAGGGCCATCAGTTTTTGCAGCCACAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3700

Protein Analysis

237

Amino Acids

25.09

Weight (kDa)

5.4

Isoelectric Point (pI)

34.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012211)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19140 AT5G19140 AT5G19140
fragaria_vesca FvH4_4g14740 FvH4_4g14740
malus_domestica MD13G1185100.v1.1 MD16G1185700.v1.1
prunus_persica Prupe.1G152400_v2.0.a1 Prupe.1G152400_v2.0.a1
pyrus_communis pycom13g15970 pycom16g15550
rosa_chinensis RchiOBHm_Chr4g0417861
rosa_laevigata RLG00000007892
rosa_multiflora Rmu_sc0004911.1_g000008
rosa_roxburghii Rroxscaffold_5G00361280
rosa_rugosa Rorug04G0149900
rosa_samantha Rh4BG218800 Rh4DG210100
rosa_wichuraiana Rw4G018000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 466
AccII CGCG 4 cut(s) 23, 342, 348, 350
AciI CCGC 8 cut(s) 35, 54, 89, 106, 129, 359, 464, 560
AcoI YGGCCR 2 cut(s) 51, 376
AcyI GRCGYC 1 cut(s) 92
AflII CTTAAG 1 cut(s) 524
AjiI CACGTC 1 cut(s) 423
AleI CACNNNNGTG 2 cut(s) 384, 632
AluBI AGCT 2 cut(s) 163, 603
AluI AGCT 2 cut(s) 163, 603
Alw21I GWGCWC 1 cut(s) 250
Alw26I GTCTC 1 cut(s) 139
AoxI GGCC 6 cut(s) 51, 165, 333, 376, 498, 683
ApeKI GCWGC 4 cut(s) 18, 60, 274, 698
AsiSI GCGATCGC 1 cut(s) 346
AspA2I CCTAGG 1 cut(s) 200
AspLEI GCGC 4 cut(s) 23, 342, 350, 352
AspS9I GGNCC 2 cut(s) 334, 683
AsuHPI GGTGA 2 cut(s) 180, 328
AvrII CCTAGG 1 cut(s) 200
BalI TGGCCA 1 cut(s) 378
BauI CACGAG 1 cut(s) 469
BbsI GAAGAC 1 cut(s) 86
Bbv12I GWGCWC 1 cut(s) 250
BbvI GCAGC 3 cut(s) 30, 72, 286
BccI CCATC 2 cut(s) 482, 694
BceAI ACGGC 2 cut(s) 102, 116
BcgI CGANNNNNNTGC 2 cut(s) 7, 41
BcoDI GTCTC 1 cut(s) 139
BfaI CTAG 3 cut(s) 98, 201, 287
BfmI CTRYAG 1 cut(s) 169
BfrI CTTAAG 1 cut(s) 524
BisI GCNGC 8 cut(s) 19, 35, 54, 61, 90, 129, 275, 699
BlnI CCTAGG 1 cut(s) 200
BlpI GCTNAGC 1 cut(s) 159
BlsI GCNGC 8 cut(s) 20, 36, 55, 62, 91, 130, 276, 700
BmgBI CACGTC 1 cut(s) 423
BmgT120I GGNCC 2 cut(s) 334, 683
BmsI GCATC 1 cut(s) 449
BoxI GACNNNNGTC 1 cut(s) 122
BpiI GAAGAC 1 cut(s) 86
Bpu1102I GCTNAGC 1 cut(s) 159
BsaHI GRCGYC 1 cut(s) 92
BsaJI CCNNGG 2 cut(s) 84, 200
BseDI CCNNGG 2 cut(s) 84, 200
BseGI GGATG 2 cut(s) 226, 572
BseMII CTCAG 3 cut(s) 173, 397, 587
BsePI GCGCGC 1 cut(s) 348
BseXI GCAGC 3 cut(s) 30, 72, 286
Bsh1236I CGCG 4 cut(s) 23, 342, 348, 350
Bsh1285I CGRYCG 2 cut(s) 27, 346
BshFI GGCC 6 cut(s) 53, 167, 335, 378, 500, 685
BsiEI CGRYCG 2 cut(s) 27, 346
BsiHKAI GWGCWC 1 cut(s) 250
BsmAI GTCTC 1 cut(s) 139
BsmBI CGTCTC 1 cut(s) 139
BsnI GGCC 6 cut(s) 53, 167, 335, 378, 500, 685
Bsp1286I GDGCHC 1 cut(s) 250
Bsp143I GATC 4 cut(s) 24, 318, 343, 624
Bsp1720I GCTNAGC 1 cut(s) 159
BspACI CCGC 8 cut(s) 35, 54, 89, 106, 129, 359, 464, 560
BspANI GGCC 6 cut(s) 53, 167, 335, 378, 500, 685
BspCNI CTCAG 3 cut(s) 172, 396, 588
BspFNI CGCG 4 cut(s) 23, 342, 348, 350
BspTI CTTAAG 1 cut(s) 524
BsrBI CCGCTC 1 cut(s) 466
BssECI CCNNGG 2 cut(s) 84, 200
BssHII GCGCGC 1 cut(s) 348
BssMI GATC 4 cut(s) 24, 318, 343, 624
BssNI GRCGYC 1 cut(s) 92
BssSI CACGAG 1 cut(s) 469
BssT1I CCWWGG 1 cut(s) 200
Bst2BI CACGAG 1 cut(s) 469
Bst4CI ACNGT 4 cut(s) 173, 192, 430, 586
Bst6I CTCTTC 1 cut(s) 645
BstACI GRCGYC 1 cut(s) 92
BstAFI CTTAAG 1 cut(s) 524
BstC8I GCNNGC 5 cut(s) 58, 165, 350, 549, 639
BstDEI CTNAG 3 cut(s) 159, 383, 596
BstDSI CCRYGG 1 cut(s) 84
BstF5I GGATG 2 cut(s) 226, 572
BstFNI CGCG 4 cut(s) 23, 342, 348, 350
BstHHI GCGC 4 cut(s) 23, 342, 350, 352
BstKTI GATC 4 cut(s) 27, 321, 346, 627
BstMAI GTCTC 1 cut(s) 139
BstMBI GATC 4 cut(s) 24, 318, 343, 624
BstMCI CGRYCG 2 cut(s) 27, 346
BstMWI GCNNNNNNNGC 5 cut(s) 164, 296, 332, 358, 638
BstPAI GACNNNNGTC 1 cut(s) 122
BstSFI CTRYAG 1 cut(s) 169
BstUI CGCG 4 cut(s) 23, 342, 348, 350
BstV1I GCAGC 3 cut(s) 30, 72, 286
BstV2I GAAGAC 1 cut(s) 86
BstXI CCANNNNNNTGG 2 cut(s) 374, 386
BsuRI GGCC 6 cut(s) 53, 167, 335, 378, 500, 685
BtgI CCRYGG 1 cut(s) 84
BtrI CACGTC 1 cut(s) 423
BtsCI GGATG 2 cut(s) 226, 572
BtsI GCAGTG 2 cut(s) 219, 627
BtsIMutI CAGTG 3 cut(s) 219, 391, 627
Cac8I GCNNGC 5 cut(s) 58, 165, 350, 549, 639
CfoI GCGC 4 cut(s) 23, 342, 350, 352
Cfr13I GGNCC 2 cut(s) 334, 683
CseI GACGC 2 cut(s) 81, 164
CspCI CAANNNNNGTGG 2 cut(s) 568, 603
CviAII CATG 1 cut(s) 368
DdeI CTNAG 3 cut(s) 159, 383, 596
DpnI GATC 4 cut(s) 26, 320, 345, 626
DpnII GATC 4 cut(s) 24, 318, 343, 624
EaeI YGGCCR 2 cut(s) 51, 376
Eam1104I CTCTTC 1 cut(s) 645
EarI CTCTTC 1 cut(s) 645
Eco130I CCWWGG 1 cut(s) 200
EcoO109I RGGNCCY 1 cut(s) 334
EcoT14I CCWWGG 1 cut(s) 200
ErhI CCWWGG 1 cut(s) 200
Esp3I CGTCTC 1 cut(s) 139
FaeI CATG 1 cut(s) 371
FaiI YATR 6 cut(s) 140, 282, 369, 404, 495, 658
FatI CATG 1 cut(s) 367
FauI CCCGC 2 cut(s) 366, 567
Fnu4HI GCNGC 8 cut(s) 19, 35, 54, 61, 90, 129, 275, 699
FokI GGATG 2 cut(s) 233, 579
Fsp4HI GCNGC 8 cut(s) 19, 35, 54, 61, 90, 129, 275, 699
FspBI CTAG 3 cut(s) 98, 201, 287
GlaI GCGC 4 cut(s) 22, 341, 349, 351
GluI GCNGC 8 cut(s) 19, 35, 54, 61, 90, 129, 275, 699
HaeIII GGCC 6 cut(s) 53, 167, 335, 378, 500, 685
HgaI GACGC 2 cut(s) 81, 164
HhaI GCGC 4 cut(s) 23, 342, 350, 352
Hin1I GRCGYC 1 cut(s) 92
Hin1II CATG 1 cut(s) 371
Hin6I GCGC 4 cut(s) 21, 340, 348, 350
HinP1I GCGC 4 cut(s) 21, 340, 348, 350
HincII GTYRAC 2 cut(s) 103, 426
HindII GTYRAC 2 cut(s) 103, 426
HindIII AAGCTT 1 cut(s) 601
HinfI GANTC 3 cut(s) 185, 460, 610
HphI GGTGA 2 cut(s) 180, 328
Hpy166II GTNNAC 3 cut(s) 103, 420, 426
Hpy188I TCNGA 1 cut(s) 445
Hpy188III TCNNGA 1 cut(s) 115
Hpy8I GTNNAC 3 cut(s) 103, 420, 426
Hpy99I CGWCG 5 cut(s) 76, 97, 155, 158, 586
HpyAV CCTTC 2 cut(s) 211, 674
HpyCH4III ACNGT 4 cut(s) 173, 192, 430, 586
HpyCH4IV ACGT 1 cut(s) 422
HpyCH4V TGCA 4 cut(s) 212, 299, 665, 698
HpyF10VI GCNNNNNNNGC 5 cut(s) 164, 296, 332, 358, 638
HpyF3I CTNAG 3 cut(s) 159, 383, 596
HpySE526I ACGT 1 cut(s) 422
Hsp92I GRCGYC 1 cut(s) 92
Hsp92II CATG 1 cut(s) 371
HspAI GCGC 4 cut(s) 21, 340, 348, 350
Kzo9I GATC 4 cut(s) 24, 318, 343, 624
LmnI GCTCC 1 cut(s) 245
LpnPI CCDG 6 cut(s) 42, 51, 128, 149, 350, 651
Lsp1109I GCAGC 3 cut(s) 30, 72, 286
LweI GCATC 1 cut(s) 449
MaeI CTAG 3 cut(s) 98, 201, 287
MaeII ACGT 1 cut(s) 422
MaeIII GTNAC 3 cut(s) 173, 186, 192
MalI GATC 4 cut(s) 26, 320, 345, 626
MbiI CCGCTC 1 cut(s) 466
MboI GATC 4 cut(s) 24, 318, 343, 624
MboII GAAGA 2 cut(s) 91, 662
MhlI GDGCHC 1 cut(s) 250
MlsI TGGCCA 1 cut(s) 378
MluCI AATT 2 cut(s) 449, 477
MluNI TGGCCA 1 cut(s) 378
MlyI GAGTC 1 cut(s) 194
MmeI TCCRAC 1 cut(s) 568
MnlI CCTC 5 cut(s) 235, 264, 316, 392, 584
Mox20I TGGCCA 1 cut(s) 378
MscI TGGCCA 1 cut(s) 378
MseI TTAA 2 cut(s) 525, 672
MslI CAYNNNNRTG 2 cut(s) 384, 632
Msp20I TGGCCA 1 cut(s) 378
MspA1I CMGCKG 2 cut(s) 56, 163
MspCI CTTAAG 1 cut(s) 524
MvnI CGCG 4 cut(s) 23, 342, 348, 350
MwoI GCNNNNNNNGC 5 cut(s) 164, 296, 332, 358, 638
NdeII GATC 4 cut(s) 24, 318, 343, 624
NlaIII CATG 1 cut(s) 371
NmuCI GTSAC 2 cut(s) 173, 186
OliI CACNNNNGTG 2 cut(s) 384, 632
PauI GCGCGC 1 cut(s) 348
PfeI GAWTC 2 cut(s) 460, 610
PkrI GCNGC 8 cut(s) 20, 36, 55, 62, 91, 130, 276, 700
Ple19I CGATCG 2 cut(s) 27, 346
PleI GAGTC 1 cut(s) 193
PpsI GAGTC 1 cut(s) 193
PshAI GACNNNNGTC 1 cut(s) 122
PspPI GGNCC 2 cut(s) 334, 683
PteI GCGCGC 1 cut(s) 348
PvuI CGATCG 2 cut(s) 27, 346
PvuII CAGCTG 1 cut(s) 163
RgaI GCGATCGC 1 cut(s) 346
RseI CAYNNNNRTG 2 cut(s) 384, 632
SaqAI TTAA 2 cut(s) 525, 672
SatI GCNGC 8 cut(s) 19, 35, 54, 61, 90, 129, 275, 699
Sau3AI GATC 4 cut(s) 24, 318, 343, 624
Sau96I GGNCC 2 cut(s) 334, 683
SchI GAGTC 1 cut(s) 194
SduI GDGCHC 1 cut(s) 250
SetI ASST 6 cut(s) 165, 206, 384, 425, 605, 678
SfaAI GCGATCGC 1 cut(s) 346
SfaNI GCATC 1 cut(s) 449
SfcI CTRYAG 1 cut(s) 169
SgfI GCGATCGC 1 cut(s) 346
SmiMI CAYNNNNRTG 2 cut(s) 384, 632
SmlI CTYRAG 1 cut(s) 524
SmoI CTYRAG 1 cut(s) 524
Sse9I AATT 2 cut(s) 449, 477
SsiI CCGC 8 cut(s) 35, 54, 89, 106, 129, 359, 464, 560
SspMI CTAG 3 cut(s) 98, 201, 287
StyI CCWWGG 1 cut(s) 200
TaaI ACNGT 4 cut(s) 173, 192, 430, 586
TaiI ACGT 1 cut(s) 425
TaqI TCGA 1 cut(s) 321
TasI AATT 2 cut(s) 449, 477
TauI GCSGC 4 cut(s) 37, 56, 92, 131
TfiI GAWTC 2 cut(s) 460, 610
Tru1I TTAA 2 cut(s) 525, 672
Tru9I TTAA 2 cut(s) 525, 672
TscAI CASTG 3 cut(s) 219, 391, 634
TseFI GTSAC 2 cut(s) 173, 186
TseI GCWGC 4 cut(s) 18, 60, 274, 698
Tsp45I GTSAC 2 cut(s) 173, 186
TspDTI ATGAA 4 cut(s) 318, 391, 543, 663
TspGWI ACGGA 1 cut(s) 60
TspRI CASTG 3 cut(s) 219, 391, 634
Vha464I CTTAAG 1 cut(s) 524
XmaJI CCTAGG 1 cut(s) 200
XspI CTAG 3 cut(s) 98, 201, 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.