Prupe.1G152400_v2.0.a1

Stem-specific protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0012211
Physical Location & Seq
Forward (+)
12034434 .. 12037557
3124 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G152400.1

Sequence Viewer

Length: 711 bp
ATGTTGGGAGTTTTCAGCAGCGCGATCGTATCGCCGCCGGACGAGCTGGTGGCCGCCGGCAGCCGCACTCCGTCTCCAAAGATAACGGCGGCGGCGCTGGTCAACCGCTTCGTCCAGAACAATGGGAACGCCGTGTCCGTACAGGTCGGCGACCATGCTCAGCTAGCCTACAGCCACAGCAACGAGTCAGCGTTACAGCCGAGGTCATTTGCAGTGAAGGATGAGATATTCTGCTTGTTTGAGGGAGCCCTTGACAACTTGGGAAGCTTGAGGCAGCAATATGGACTAGCCAAGTTTGCAAATGAAGTGCTTTTGGTGATTGAGGCCTACAAGGCACTGCGAGACCGGGCCCCCTACCCACCTAACCATGTGGTTGGCCACCTCAGTGGAAATTTTGCTTTCATAGTATTTGACAAGTCCACCTCCACCTTGTTCGTGGCTTCTGACCAATATGGCAAGGTGCCTCTGTCTTGGGGAATCACCGCTGATGGATATGTGGCCTTTGCTGATGACGCAGAGTTGCTTAAGGGTGCTTGTGGCAAGTCACTTGCCTCATTCCCTCAAGGATGCTTCTACTCCACAGCGGTTGGAGGCCTGAGAAGCTATGAGAATCCTAAAAACAAGATCACTGCTATACCTGCTACTGAAGAAGAGTTCTGGGGTGCAACATTTAAGGTGGAAGGGCCAGCAGTTTTTGCAGCCACAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3700

Protein Analysis

237

Amino Acids

25.18

Weight (kDa)

5.81

Isoelectric Point (pI)

32.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012211)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19140 AT5G19140 AT5G19140
fragaria_vesca FvH4_4g14740 FvH4_4g14740
malus_domestica MD13G1185100.v1.1 MD16G1185700.v1.1
prunus_persica Prupe.1G152400_v2.0.a1 Prupe.1G152400_v2.0.a1
pyrus_communis pycom13g15970 pycom16g15550
rosa_chinensis RchiOBHm_Chr4g0417861
rosa_laevigata RLG00000007892
rosa_multiflora Rmu_sc0004911.1_g000008
rosa_roxburghii Rroxscaffold_5G00361280
rosa_rugosa Rorug04G0149900
rosa_samantha Rh4BG218800 Rh4DG210100
rosa_wichuraiana Rw4G018000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 646
AccB1I GGYRCC 1 cut(s) 460
AccII CGCG 1 cut(s) 23
AciI CCGC 8 cut(s) 35, 54, 64, 89, 92, 106, 483, 584
AcoI YGGCCR 2 cut(s) 51, 376
AcsI RAATTY 1 cut(s) 391
AcuI CTGAAG 1 cut(s) 666
AfaI GTAC 1 cut(s) 141
AflII CTTAAG 1 cut(s) 524
AleI CACNNNNGTG 1 cut(s) 384
AloI GAACNNNNNNTCC 2 cut(s) 119, 151
AluBI AGCT 4 cut(s) 46, 163, 267, 603
AluI AGCT 4 cut(s) 46, 163, 267, 603
Alw26I GTCTC 2 cut(s) 78, 336
AoxI GGCC 7 cut(s) 51, 324, 348, 376, 498, 592, 683
ApaI GGGCCC 1 cut(s) 352
ApeKI GCWGC 4 cut(s) 18, 60, 274, 698
ApoI RAATTY 1 cut(s) 391
AspLEI GCGC 2 cut(s) 23, 97
AspS9I GGNCC 3 cut(s) 348, 349, 683
AsuC2I CCSGG 1 cut(s) 347
AsuHPI GGTGA 2 cut(s) 328, 472
AsuNHI GCTAGC 1 cut(s) 163
BaeGI GKGCMC 1 cut(s) 352
BalI TGGCCA 1 cut(s) 378
BanI GGYRCC 1 cut(s) 460
BanII GRGCYC 2 cut(s) 250, 352
BbvI GCAGC 3 cut(s) 30, 72, 286
BccI CCATC 1 cut(s) 482
BceAI ACGGC 2 cut(s) 102, 116
BcgI CGANNNNNNTGC 2 cut(s) 7, 41
BcnI CCSGG 1 cut(s) 347
BcoDI GTCTC 2 cut(s) 78, 336
BfaI CTAG 2 cut(s) 164, 287
BfmI CTRYAG 1 cut(s) 169
BfoI RGCGCY 1 cut(s) 98
BfrI CTTAAG 1 cut(s) 524
BfuAI ACCTGC 1 cut(s) 646
BglI GCCNNNNNGGC 1 cut(s) 332
BisI GCNGC 9 cut(s) 19, 35, 54, 61, 64, 90, 93, 275, 699
BlpI GCTNAGC 1 cut(s) 159
BlsI GCNGC 9 cut(s) 20, 36, 55, 62, 65, 91, 94, 276, 700
Bme1390I CCNGG 1 cut(s) 347
BmgT120I GGNCC 3 cut(s) 348, 349, 683
BmiI GGNNCC 4 cut(s) 247, 350, 351, 462
BmrFI CCNGG 1 cut(s) 347
BmsI GCATC 1 cut(s) 557
BmtI GCTAGC 1 cut(s) 167
Bpu1102I GCTNAGC 1 cut(s) 159
BpuEI CTTGAG 2 cut(s) 289, 546
BpuMI CCSGG 1 cut(s) 347
BsaI GGTCTC 1 cut(s) 336
BsaJI CCNNGG 1 cut(s) 200
BsaXI ACNNNNNCTCC 2 cut(s) 58, 88
Bse118I RCCGGY 1 cut(s) 56
BseDI CCNNGG 1 cut(s) 200
BseGI GGATG 2 cut(s) 226, 572
BseMII CTCAG 3 cut(s) 173, 397, 587
BseSI GKGCMC 1 cut(s) 352
BseXI GCAGC 3 cut(s) 30, 72, 286
Bsh1236I CGCG 1 cut(s) 23
Bsh1285I CGRYCG 1 cut(s) 27
BshFI GGCC 7 cut(s) 53, 326, 350, 378, 500, 594, 685
BshNI GGYRCC 1 cut(s) 460
BsiEI CGRYCG 1 cut(s) 27
BsiSI CCGG 3 cut(s) 38, 57, 346
BsmAI GTCTC 2 cut(s) 78, 336
BsmBI CGTCTC 1 cut(s) 78
BsnI GGCC 7 cut(s) 53, 326, 350, 378, 500, 594, 685
Bso31I GGTCTC 1 cut(s) 336
Bsp120I GGGCCC 1 cut(s) 348
Bsp1286I GDGCHC 2 cut(s) 250, 352
Bsp143I GATC 2 cut(s) 24, 624
Bsp1720I GCTNAGC 1 cut(s) 159
BspACI CCGC 8 cut(s) 35, 54, 64, 89, 92, 106, 483, 584
BspANI GGCC 7 cut(s) 53, 326, 350, 378, 500, 594, 685
BspCNI CTCAG 3 cut(s) 172, 396, 588
BspFNI CGCG 1 cut(s) 23
BspLI GGNNCC 4 cut(s) 247, 350, 351, 462
BspMI ACCTGC 1 cut(s) 646
BspOI GCTAGC 1 cut(s) 167
BspT107I GGYRCC 1 cut(s) 460
BspTI CTTAAG 1 cut(s) 524
BspTNI GGTCTC 1 cut(s) 336
BsrFI RCCGGY 1 cut(s) 56
BssAI RCCGGY 1 cut(s) 56
BssECI CCNNGG 1 cut(s) 200
BssMI GATC 2 cut(s) 24, 624
Bst6I CTCTTC 1 cut(s) 645
BstAFI CTTAAG 1 cut(s) 524
BstAPI GCANNNNNTGC 1 cut(s) 695
BstC8I GCNNGC 3 cut(s) 58, 165, 687
BstDEI CTNAG 3 cut(s) 159, 383, 596
BstF5I GGATG 2 cut(s) 226, 572
BstFNI CGCG 1 cut(s) 23
BstH2I RGCGCY 1 cut(s) 98
BstHHI GCGC 2 cut(s) 23, 97
BstKTI GATC 2 cut(s) 27, 627
BstMAI GTCTC 2 cut(s) 78, 336
BstMBI GATC 2 cut(s) 24, 624
BstMCI CGRYCG 1 cut(s) 27
BstMWI GCNNNNNNNGC 8 cut(s) 43, 164, 296, 332, 512, 600, 638, 695
BstSCI CCNGG 1 cut(s) 345
BstSFI CTRYAG 1 cut(s) 169
BstSLI GKGCMC 1 cut(s) 352
BstUI CGCG 1 cut(s) 23
BstV1I GCAGC 3 cut(s) 30, 72, 286
BstXI CCANNNNNNTGG 3 cut(s) 122, 374, 386
BsuRI GGCC 7 cut(s) 53, 326, 350, 378, 500, 594, 685
BtsCI GGATG 2 cut(s) 226, 572
BtsI GCAGTG 3 cut(s) 219, 335, 627
BtsIMutI CAGTG 4 cut(s) 219, 335, 391, 627
BveI ACCTGC 1 cut(s) 646
Cac8I GCNNGC 3 cut(s) 58, 165, 687
CfoI GCGC 2 cut(s) 23, 97
Cfr10I RCCGGY 1 cut(s) 56
Cfr13I GGNCC 3 cut(s) 348, 349, 683
CseI GACGC 1 cut(s) 521
Csp6I GTAC 1 cut(s) 140
CspCI CAANNNNNGTGG 2 cut(s) 568, 603
CviAII CATG 2 cut(s) 155, 368
CviQI GTAC 1 cut(s) 140
DdeI CTNAG 3 cut(s) 159, 383, 596
DpnI GATC 2 cut(s) 26, 626
DpnII GATC 2 cut(s) 24, 624
EaeI YGGCCR 2 cut(s) 51, 376
Eam1104I CTCTTC 1 cut(s) 645
EarI CTCTTC 1 cut(s) 645
Eco147I AGGCCT 2 cut(s) 326, 594
Eco24I GRGCYC 2 cut(s) 250, 352
Eco31I GGTCTC 1 cut(s) 336
Eco57I CTGAAG 1 cut(s) 666
EcoO109I RGGNCCY 1 cut(s) 349
EcoT38I GRGCYC 2 cut(s) 250, 352
Esp3I CGTCTC 1 cut(s) 78
FaeI CATG 2 cut(s) 158, 371
FaiI YATR 8 cut(s) 156, 282, 369, 404, 453, 495, 606, 635
FatI CATG 2 cut(s) 154, 367
Fnu4HI GCNGC 9 cut(s) 19, 35, 54, 61, 64, 90, 93, 275, 699
FokI GGATG 2 cut(s) 233, 579
FriOI GRGCYC 2 cut(s) 250, 352
Fsp4HI GCNGC 9 cut(s) 19, 35, 54, 61, 64, 90, 93, 275, 699
FspBI CTAG 2 cut(s) 164, 287
GlaI GCGC 2 cut(s) 22, 96
GluI GCNGC 9 cut(s) 19, 35, 54, 61, 64, 90, 93, 275, 699
HaeII RGCGCY 1 cut(s) 98
HaeIII GGCC 7 cut(s) 53, 326, 350, 378, 500, 594, 685
HapII CCGG 3 cut(s) 38, 57, 346
HgaI GACGC 1 cut(s) 521
HhaI GCGC 2 cut(s) 23, 97
Hin1II CATG 2 cut(s) 158, 371
Hin6I GCGC 2 cut(s) 21, 95
HinP1I GCGC 2 cut(s) 21, 95
HincII GTYRAC 1 cut(s) 103
HindII GTYRAC 1 cut(s) 103
HindIII AAGCTT 1 cut(s) 265
HinfI GANTC 3 cut(s) 185, 477, 610
HpaII CCGG 3 cut(s) 38, 57, 346
HphI GGTGA 2 cut(s) 328, 472
Hpy166II GTNNAC 2 cut(s) 103, 420
Hpy188I TCNGA 1 cut(s) 445
Hpy188III TCNNGA 1 cut(s) 115
Hpy8I GTNNAC 2 cut(s) 103, 420
HpyAV CCTTC 2 cut(s) 211, 674
HpyCH4V TGCA 4 cut(s) 212, 299, 665, 698
HpyF10VI GCNNNNNNNGC 8 cut(s) 43, 164, 296, 332, 512, 600, 638, 695
HpyF3I CTNAG 3 cut(s) 159, 383, 596
Hsp92II CATG 2 cut(s) 158, 371
HspAI GCGC 2 cut(s) 21, 95
KroI GCCGGC 1 cut(s) 56
KroNI GCCGGC 1 cut(s) 58
Kzo9I GATC 2 cut(s) 24, 624
LmnI GCTCC 1 cut(s) 245
Lsp1109I GCAGC 3 cut(s) 30, 72, 286
LweI GCATC 1 cut(s) 557
MaeI CTAG 2 cut(s) 164, 287
MaeIII GTNAC 2 cut(s) 192, 543
MalI GATC 2 cut(s) 26, 626
MboI GATC 2 cut(s) 24, 624
MboII GAAGA 2 cut(s) 659, 662
MhlI GDGCHC 2 cut(s) 250, 352
MlsI TGGCCA 1 cut(s) 378
MluCI AATT 1 cut(s) 391
MluNI TGGCCA 1 cut(s) 378
MlyI GAGTC 1 cut(s) 194
MmeI TCCRAC 1 cut(s) 568
Mox20I TGGCCA 1 cut(s) 378
MroNI GCCGGC 1 cut(s) 56
MscI TGGCCA 1 cut(s) 378
MseI TTAA 2 cut(s) 525, 672
MslI CAYNNNNRTG 1 cut(s) 384
Msp20I TGGCCA 1 cut(s) 378
MspA1I CMGCKG 2 cut(s) 485, 584
MspCI CTTAAG 1 cut(s) 524
MspI CCGG 3 cut(s) 38, 57, 346
MspR9I CCNGG 1 cut(s) 347
MvnI CGCG 1 cut(s) 23
MwoI GCNNNNNNNGC 8 cut(s) 43, 164, 296, 332, 512, 600, 638, 695
NaeI GCCGGC 1 cut(s) 58
NciI CCSGG 1 cut(s) 347
NdeII GATC 2 cut(s) 24, 624
NgoMIV GCCGGC 1 cut(s) 56
NheI GCTAGC 1 cut(s) 163
NlaIII CATG 2 cut(s) 158, 371
NlaIV GGNNCC 4 cut(s) 247, 350, 351, 462
NmeAIII GCCGAG 1 cut(s) 225
NmuCI GTSAC 1 cut(s) 543
OliI CACNNNNGTG 1 cut(s) 384
PceI AGGCCT 2 cut(s) 326, 594
PcsI WCGNNNNNNNCGW 1 cut(s) 135
PdiI GCCGGC 1 cut(s) 58
PfeI GAWTC 2 cut(s) 477, 610
PkrI GCNGC 9 cut(s) 20, 36, 55, 62, 65, 91, 94, 276, 700
Ple19I CGATCG 1 cut(s) 27
PleI GAGTC 1 cut(s) 193
PpsI GAGTC 1 cut(s) 193
PspN4I GGNNCC 4 cut(s) 247, 350, 351, 462
PspOMI GGGCCC 1 cut(s) 348
PspPI GGNCC 3 cut(s) 348, 349, 683
PvuI CGATCG 1 cut(s) 27
RsaI GTAC 1 cut(s) 141
RsaNI GTAC 1 cut(s) 140
RseI CAYNNNNRTG 1 cut(s) 384
SaqAI TTAA 2 cut(s) 525, 672
SatI GCNGC 9 cut(s) 19, 35, 54, 61, 64, 90, 93, 275, 699
Sau3AI GATC 2 cut(s) 24, 624
Sau96I GGNCC 3 cut(s) 348, 349, 683
SchI GAGTC 1 cut(s) 194
ScrFI CCNGG 1 cut(s) 347
SduI GDGCHC 2 cut(s) 250, 352
SfaNI GCATC 1 cut(s) 557
SfcI CTRYAG 1 cut(s) 169
SmiMI CAYNNNNRTG 1 cut(s) 384
SmlI CTYRAG 3 cut(s) 268, 524, 561
SmoI CTYRAG 3 cut(s) 268, 524, 561
Sse9I AATT 1 cut(s) 391
SseBI AGGCCT 2 cut(s) 326, 594
SsiI CCGC 8 cut(s) 35, 54, 64, 89, 92, 106, 483, 584
SspMI CTAG 2 cut(s) 164, 287
StuI AGGCCT 2 cut(s) 326, 594
StyD4I CCNGG 1 cut(s) 345
TasI AATT 1 cut(s) 391
TauI GCSGC 5 cut(s) 37, 56, 66, 92, 95
TfiI GAWTC 2 cut(s) 477, 610
Tru1I TTAA 2 cut(s) 525, 672
Tru9I TTAA 2 cut(s) 525, 672
TscAI CASTG 4 cut(s) 219, 342, 391, 634
TseFI GTSAC 1 cut(s) 543
TseI GCWGC 4 cut(s) 18, 60, 274, 698
Tsp45I GTSAC 1 cut(s) 543
TspDTI ATGAA 2 cut(s) 318, 391
TspGWI ACGGA 2 cut(s) 60, 127
TspRI CASTG 4 cut(s) 219, 342, 391, 634
Vha464I CTTAAG 1 cut(s) 524
XapI RAATTY 1 cut(s) 391
XcmI CCANNNNNNNNNTGG 1 cut(s) 433
XspI CTAG 2 cut(s) 164, 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.