Rroxscaffold_5G00361280

Stem-specific protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0012211
Physical Location & Seq
Reverse (-)
41933552 .. 41936633
3082 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00361280.1

Sequence Viewer

Length: 786 bp
ATGAAATCGCACCCCCACCTTGCCAACGATCCCATCACTTGTCCGAGCTTTTCACCTTCATTTCTCGAGTTTTTCTTTTGCTCTTTCCGGTCGAATCAGTCAGTGGTCGTCATCATGTTGGGAGTGTTCAGCAGCGCGATAGTGTCCCCTCCCGACGAGCTAGTCGCCGCCGGGAGCCGCACGCCGTCGCCGAAGATCACGGCGAATGCGCTGATCAACCGCTTCGTCGAGAGCAATTCCTCCGCCGTGTCCATACAGGTCGGCGACCACGTCCAGCTGGCCTACAGCCACGACAACGAGTCCCCGATACAACCGAGGTCGTTTGCTGTTAAGGATGAGGTCTTCTGCTTGTTTGAGGGAGCACTTGACAACTTGGGAAGCTTGAGGCAGCAATATGGCCTGGCCAAGTCTGCAAATGAAGTGATTTTGGTCATTGAGGCTTACAAGGCGCTTCGCGATCGGGCACCTTACCCACCCAACCATGTTGTTGGCCATCTCCATGGAAATTTTGCTTTCATAGACCAATTTGGCAAGGTCCCTCTCTCTTGGGGAATCACTGCTGATGGATATGTGGCCTTTGCTGATGATGCGGAGTTACTTAAGGGTGCTTGTGGCAAGTCACTTGCTTCATTCCCTCAAGGGTGTTTCTACTCAACAAGTGTTGGAGGACTGAGAAGCTATGAGAATCCTAAATATGTAATCACTGCTGTACCGGCTACTGATGAAGAGATCTGGGGTGCAACATTTAAGGTTGAAGGGCCATCAGTTCTTGCAGCCACAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3700

Protein Analysis

261

Amino Acids

28.14

Weight (kDa)

5.62

Isoelectric Point (pI)

39.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3700 PF12481 40 - 251 1.9e-79 Aluminium induced protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012211)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19140 AT5G19140 AT5G19140
fragaria_vesca FvH4_4g14740 FvH4_4g14740
malus_domestica MD13G1185100.v1.1 MD16G1185700.v1.1
prunus_persica Prupe.1G152400_v2.0.a1 Prupe.1G152400_v2.0.a1
pyrus_communis pycom13g15970 pycom16g15550
rosa_chinensis RchiOBHm_Chr4g0417861
rosa_laevigata RLG00000007892
rosa_multiflora Rmu_sc0004911.1_g000008
rosa_roxburghii Rroxscaffold_5G00361280
rosa_rugosa Rorug04G0149900
rosa_samantha Rh4BG218800 Rh4DG210100
rosa_wichuraiana Rw4G018000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 161
AccB1I GGYRCC 1 cut(s) 463
AccII CGCG 2 cut(s) 137, 456
AciI CCGC 5 cut(s) 168, 178, 220, 243, 590
AclWI GGATC 1 cut(s) 23
AcoI YGGCCR 2 cut(s) 402, 490
AcsI RAATTY 1 cut(s) 505
AfaI GTAC 1 cut(s) 711
AflII CTTAAG 1 cut(s) 599
AgsI TTSAA 1 cut(s) 755
AhdI GACNNNNNGTC 1 cut(s) 298
AjiI CACGTC 1 cut(s) 271
AjnI CCWGG 1 cut(s) 399
AluBI AGCT 5 cut(s) 48, 160, 277, 381, 678
AluI AGCT 5 cut(s) 48, 160, 277, 381, 678
Alw21I GWGCWC 1 cut(s) 364
AlwI GGATC 1 cut(s) 23
Ama87I CYCGRG 1 cut(s) 65
AoxI GGCC 6 cut(s) 279, 397, 402, 490, 573, 758
ApeKI GCWGC 3 cut(s) 132, 388, 773
ApoI RAATTY 1 cut(s) 505
AspLEI GCGC 3 cut(s) 137, 211, 451
AspS9I GGNCC 2 cut(s) 535, 758
AsuC2I CCSGG 1 cut(s) 172
AsuHPI GGTGA 1 cut(s) 45
AvaI CYCGRG 1 cut(s) 65
AvaII GGWCC 1 cut(s) 535
BaeGI GKGCMC 1 cut(s) 466
BaeI ACNNNNGTAYC 2 cut(s) 693, 726
BalI TGGCCA 2 cut(s) 404, 492
BanI GGYRCC 1 cut(s) 463
BbsI GAAGAC 1 cut(s) 334
Bbv12I GWGCWC 1 cut(s) 364
BbvI GCAGC 2 cut(s) 144, 400
BccI CCATC 4 cut(s) 41, 501, 557, 769
BceAI ACGGC 3 cut(s) 169, 216, 230
BciT130I CCWGG 1 cut(s) 401
BclI TGATCA 1 cut(s) 213
BcnI CCSGG 1 cut(s) 172
BfaI CTAG 1 cut(s) 161
BfmI CTRYAG 1 cut(s) 283
BfoI RGCGCY 1 cut(s) 452
BfrI CTTAAG 1 cut(s) 599
BglII AGATCT 1 cut(s) 729
BisI GCNGC 5 cut(s) 133, 168, 178, 389, 774
BlsI GCNGC 5 cut(s) 134, 169, 179, 390, 775
Bme1390I CCNGG 2 cut(s) 172, 401
Bme18I GGWCC 1 cut(s) 535
BmeRI GACNNNNNGTC 1 cut(s) 298
BmeT110I CYCGRG 1 cut(s) 65
BmgBI CACGTC 1 cut(s) 271
BmgT120I GGNCC 2 cut(s) 535, 758
BmiI GGNNCC 3 cut(s) 176, 465, 537
BmrFI CCNGG 2 cut(s) 172, 401
BmsI GCATC 1 cut(s) 577
BpiI GAAGAC 1 cut(s) 334
BpuEI CTTGAG 2 cut(s) 403, 621
BpuMI CCSGG 1 cut(s) 172
BsaJI CCNNGG 2 cut(s) 314, 499
BsaWI WCCGGW 1 cut(s) 87
Bse118I RCCGGY 1 cut(s) 712
BseBI CCWGG 1 cut(s) 401
BseDI CCNNGG 2 cut(s) 314, 499
BseGI GGATG 1 cut(s) 340
BseMII CTCAG 1 cut(s) 662
BseSI GKGCMC 1 cut(s) 466
BseXI GCAGC 2 cut(s) 144, 400
Bsh1236I CGCG 2 cut(s) 137, 456
Bsh1285I CGRYCG 2 cut(s) 92, 460
BshFI GGCC 6 cut(s) 281, 399, 404, 492, 575, 760
BshNI GGYRCC 1 cut(s) 463
BsiEI CGRYCG 2 cut(s) 92, 460
BsiHKAI GWGCWC 1 cut(s) 364
BsiHKCI CYCGRG 1 cut(s) 65
BsiSI CCGG 3 cut(s) 88, 171, 713
BslFI GGGAC 3 cut(s) 130, 286, 521
BsmFI GGGAC 3 cut(s) 130, 286, 521
BsmI GAATGC 1 cut(s) 211
BsnI GGCC 6 cut(s) 281, 399, 404, 492, 575, 760
BsoBI CYCGRG 1 cut(s) 65
Bsp1286I GDGCHC 2 cut(s) 364, 466
Bsp143I GATC 5 cut(s) 28, 195, 213, 457, 729
Bsp19I CCATGG 1 cut(s) 499
Bsp68I TCGCGA 1 cut(s) 456
BspACI CCGC 5 cut(s) 168, 178, 220, 243, 590
BspANI GGCC 6 cut(s) 281, 399, 404, 492, 575, 760
BspCNI CTCAG 1 cut(s) 663
BspFNI CGCG 2 cut(s) 137, 456
BspLI GGNNCC 3 cut(s) 176, 465, 537
BspPI GGATC 1 cut(s) 23
BspT107I GGYRCC 1 cut(s) 463
BspTI CTTAAG 1 cut(s) 599
BsrFI RCCGGY 1 cut(s) 712
BssAI RCCGGY 1 cut(s) 712
BssECI CCNNGG 2 cut(s) 314, 499
BssMI GATC 5 cut(s) 28, 195, 213, 457, 729
BssT1I CCWWGG 1 cut(s) 499
Bst2UI CCWGG 1 cut(s) 401
Bst6I CTCTTC 1 cut(s) 720
BstAFI CTTAAG 1 cut(s) 599
BstC8I GCNNGC 2 cut(s) 182, 279
BstDEI CTNAG 1 cut(s) 671
BstDSI CCRYGG 1 cut(s) 499
BstF5I GGATG 1 cut(s) 340
BstFNI CGCG 2 cut(s) 137, 456
BstH2I RGCGCY 1 cut(s) 452
BstHHI GCGC 3 cut(s) 137, 211, 451
BstKTI GATC 5 cut(s) 31, 198, 216, 460, 732
BstMBI GATC 5 cut(s) 28, 195, 213, 457, 729
BstMCI CGRYCG 2 cut(s) 92, 460
BstMWI GCNNNNNNNGC 4 cut(s) 410, 446, 587, 713
BstNI CCWGG 1 cut(s) 401
BstSCI CCNGG 2 cut(s) 170, 399
BstSFI CTRYAG 1 cut(s) 283
BstSLI GKGCMC 1 cut(s) 466
BstUI CGCG 2 cut(s) 137, 456
BstV1I GCAGC 2 cut(s) 144, 400
BstV2I GAAGAC 1 cut(s) 334
BstX2I RGATCY 1 cut(s) 729
BstXI CCANNNNNNTGG 2 cut(s) 488, 500
BstYI RGATCY 1 cut(s) 729
BsuRI GGCC 6 cut(s) 281, 399, 404, 492, 575, 760
BtgI CCRYGG 1 cut(s) 499
BtrI CACGTC 1 cut(s) 271
BtsCI GGATG 1 cut(s) 340
BtsI GCAGTG 2 cut(s) 555, 702
BtsIMutI CAGTG 3 cut(s) 108, 555, 702
BtuMI TCGCGA 1 cut(s) 456
Cac8I GCNNGC 2 cut(s) 182, 279
CfoI GCGC 3 cut(s) 137, 211, 451
Cfr10I RCCGGY 1 cut(s) 712
Cfr13I GGNCC 2 cut(s) 535, 758
Csp6I GTAC 1 cut(s) 710
CviAII CATG 3 cut(s) 115, 482, 500
CviQI GTAC 1 cut(s) 710
DdeI CTNAG 1 cut(s) 671
DpnI GATC 5 cut(s) 30, 197, 215, 459, 731
DpnII GATC 5 cut(s) 28, 195, 213, 457, 729
DrdI GACNNNNNNGTC 1 cut(s) 161
DriI GACNNNNNGTC 1 cut(s) 298
DseDI GACNNNNNNGTC 1 cut(s) 161
EaeI YGGCCR 2 cut(s) 402, 490
Eam1104I CTCTTC 1 cut(s) 720
Eam1105I GACNNNNNGTC 1 cut(s) 298
EarI CTCTTC 1 cut(s) 720
EciI GGCGGA 1 cut(s) 232
Eco130I CCWWGG 1 cut(s) 499
Eco47I GGWCC 1 cut(s) 535
Eco88I CYCGRG 1 cut(s) 65
EcoO109I RGGNCCY 1 cut(s) 535
EcoRII CCWGG 1 cut(s) 399
EcoT14I CCWWGG 1 cut(s) 499
ErhI CCWWGG 1 cut(s) 499
FaeI CATG 3 cut(s) 118, 485, 503
FaiI YATR 9 cut(s) 116, 254, 396, 483, 501, 518, 570, 681, 696
FaqI GGGAC 3 cut(s) 130, 286, 521
FatI CATG 3 cut(s) 114, 481, 499
FbaI TGATCA 1 cut(s) 213
Fnu4HI GCNGC 5 cut(s) 133, 168, 178, 389, 774
FokI GGATG 1 cut(s) 347
Fsp4HI GCNGC 5 cut(s) 133, 168, 178, 389, 774
FspBI CTAG 1 cut(s) 161
GlaI GCGC 3 cut(s) 136, 210, 450
GluI GCNGC 5 cut(s) 133, 168, 178, 389, 774
HaeII RGCGCY 1 cut(s) 452
HaeIII GGCC 6 cut(s) 281, 399, 404, 492, 575, 760
HapII CCGG 3 cut(s) 88, 171, 713
HhaI GCGC 3 cut(s) 137, 211, 451
Hin1II CATG 3 cut(s) 118, 485, 503
Hin6I GCGC 3 cut(s) 135, 209, 449
HinP1I GCGC 3 cut(s) 135, 209, 449
HindIII AAGCTT 1 cut(s) 379
HinfI GANTC 4 cut(s) 94, 299, 552, 685
HpaII CCGG 3 cut(s) 88, 171, 713
HphI GGTGA 1 cut(s) 45
Hpy188I TCNGA 1 cut(s) 45
Hpy188III TCNNGA 4 cut(s) 65, 152, 229, 455
Hpy99I CGWCG 3 cut(s) 158, 190, 230
HpyAV CCTTC 2 cut(s) 66, 749
HpyCH4IV ACGT 1 cut(s) 270
HpyCH4V TGCA 3 cut(s) 413, 740, 773
HpyF10VI GCNNNNNNNGC 4 cut(s) 410, 446, 587, 713
HpyF3I CTNAG 1 cut(s) 671
HpySE526I ACGT 1 cut(s) 270
Hsp92II CATG 3 cut(s) 118, 485, 503
HspAI GCGC 3 cut(s) 135, 209, 449
Ksp22I TGATCA 1 cut(s) 213
Kzo9I GATC 5 cut(s) 28, 195, 213, 457, 729
LmnI GCTCC 2 cut(s) 174, 359
LpnPI CCDG 9 cut(s) 101, 184, 242, 263, 287, 386, 413, 718, 726
Lsp1109I GCAGC 2 cut(s) 144, 400
LweI GCATC 1 cut(s) 577
MaeI CTAG 1 cut(s) 161
MaeII ACGT 1 cut(s) 270
MaeIII GTNAC 2 cut(s) 594, 618
MalI GATC 5 cut(s) 30, 197, 215, 459, 731
MboI GATC 5 cut(s) 28, 195, 213, 457, 729
MboII GAAGA 3 cut(s) 205, 334, 737
MflI RGATCY 1 cut(s) 729
MhlI GDGCHC 2 cut(s) 364, 466
MlsI TGGCCA 2 cut(s) 404, 492
MluCI AATT 3 cut(s) 235, 505, 524
MluNI TGGCCA 2 cut(s) 404, 492
MlyI GAGTC 1 cut(s) 308
MmeI TCCRAC 1 cut(s) 643
Mox20I TGGCCA 2 cut(s) 404, 492
MscI TGGCCA 2 cut(s) 404, 492
MseI TTAA 3 cut(s) 330, 600, 747
MslI CAYNNNNRTG 1 cut(s) 498
Msp20I TGGCCA 2 cut(s) 404, 492
MspA1I CMGCKG 1 cut(s) 277
MspCI CTTAAG 1 cut(s) 599
MspI CCGG 3 cut(s) 88, 171, 713
MspR9I CCNGG 2 cut(s) 172, 401
Mva1269I GAATGC 1 cut(s) 211
MvaI CCWGG 1 cut(s) 401
MvnI CGCG 2 cut(s) 137, 456
MwoI GCNNNNNNNGC 4 cut(s) 410, 446, 587, 713
NciI CCSGG 1 cut(s) 172
NcoI CCATGG 1 cut(s) 499
NdeII GATC 5 cut(s) 28, 195, 213, 457, 729
NlaIII CATG 3 cut(s) 118, 485, 503
NlaIV GGNNCC 3 cut(s) 176, 465, 537
NmuCI GTSAC 1 cut(s) 618
NruI TCGCGA 1 cut(s) 456
PaeR7I CTCGAG 1 cut(s) 65
PcsI WCGNNNNNNNCGW 2 cut(s) 188, 267
PctI GAATGC 1 cut(s) 211
PfeI GAWTC 3 cut(s) 94, 552, 685
PflFI GACNNNGTC 1 cut(s) 269
PkrI GCNGC 5 cut(s) 134, 169, 179, 390, 775
Ple19I CGATCG 1 cut(s) 460
PleI GAGTC 1 cut(s) 307
PpsI GAGTC 1 cut(s) 307
PpuMI RGGWCCY 1 cut(s) 535
Psp5II RGGWCCY 1 cut(s) 535
Psp6I CCWGG 1 cut(s) 399
PspGI CCWGG 1 cut(s) 399
PspN4I GGNNCC 3 cut(s) 176, 465, 537
PspPI GGNCC 2 cut(s) 535, 758
PspPPI RGGWCCY 1 cut(s) 535
PsuI RGATCY 1 cut(s) 729
PsyI GACNNNGTC 1 cut(s) 269
PvuI CGATCG 1 cut(s) 460
PvuII CAGCTG 1 cut(s) 277
RruI TCGCGA 1 cut(s) 456
RsaI GTAC 1 cut(s) 711
RsaNI GTAC 1 cut(s) 710
RseI CAYNNNNRTG 1 cut(s) 498
SaqAI TTAA 3 cut(s) 330, 600, 747
SatI GCNGC 5 cut(s) 133, 168, 178, 389, 774
Sau3AI GATC 5 cut(s) 28, 195, 213, 457, 729
Sau96I GGNCC 2 cut(s) 535, 758
SchI GAGTC 1 cut(s) 308
ScrFI CCNGG 2 cut(s) 172, 401
SduI GDGCHC 2 cut(s) 364, 466
SfaNI GCATC 1 cut(s) 577
SfcI CTRYAG 1 cut(s) 283
Sfr274I CTCGAG 1 cut(s) 65
SinI GGWCC 1 cut(s) 535
SlaI CTCGAG 1 cut(s) 65
SmiMI CAYNNNNRTG 1 cut(s) 498
SmlI CTYRAG 4 cut(s) 65, 382, 599, 636
SmoI CTYRAG 4 cut(s) 65, 382, 599, 636
Sse9I AATT 3 cut(s) 235, 505, 524
SsiI CCGC 5 cut(s) 168, 178, 220, 243, 590
SspMI CTAG 1 cut(s) 161
StyD4I CCNGG 2 cut(s) 170, 399
StyI CCWWGG 1 cut(s) 499
TaiI ACGT 1 cut(s) 273
TaqI TCGA 3 cut(s) 66, 92, 228
TasI AATT 3 cut(s) 235, 505, 524
TauI GCSGC 2 cut(s) 170, 180
TfiI GAWTC 3 cut(s) 94, 552, 685
Tru1I TTAA 3 cut(s) 330, 600, 747
Tru9I TTAA 3 cut(s) 330, 600, 747
TscAI CASTG 3 cut(s) 108, 562, 709
TseFI GTSAC 1 cut(s) 618
TseI GCWGC 3 cut(s) 132, 388, 773
Tsp45I GTSAC 1 cut(s) 618
TspDTI ATGAA 6 cut(s) 17, 48, 432, 505, 618, 738
TspRI CASTG 3 cut(s) 108, 562, 709
Tth111I GACNNNGTC 1 cut(s) 269
Vha464I CTTAAG 1 cut(s) 599
VpaK11BI GGWCC 1 cut(s) 535
XapI RAATTY 1 cut(s) 505
XhoI CTCGAG 1 cut(s) 65
XspI CTAG 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.