AT5G19550

Aspartate aminotransferase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
6597971 .. 6601971
4001 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G19550.1

Sequence Viewer

Length: 1218 bp
ATGGATTCCGTCTTCTCTAACGTTGCTCGTGCTCCCGAAGATCCTATTCTCGGTGTAACTGTTGCTTACAACAATGATCCTAGTCCTGTTAAGATCAATTTGGGTGTCGGTGCCTACCGAACTGAGGAAGGGAAGCCTCTTGTTCTTGATGTGGTGCGTAAGGCAGAGCAACAGCTAGTGAACGATCCGTCTCGGGTCAAGGAATACATTCCCATTGTTGGTATTTCCGATTTTAACAAGTTAAGCGCCAAGCTCATCTTAGGTGCTGACAGTCCTGCGATTACAGAAAGTAGAGTTACTACAGTCCAGTGCTTGTCTGGTACTGGTTCGTTGAGAGTTGGGGCTGAGTTTCTCAAAACACACTACCACCAAAGTGTCATTTACATTCCAAAACCAACTTGGGGGAACCATCCCAAAGTTTTCAACTTGGCAGGCTTGTCTGTGGAGTATTTCCGCTACTATGATCCTGCAACCCGTGGTCTTGACTTCAAAGGCTTGCTCGAGGATCTTGGCGCTGCACCATCTGGAGCTATTGTCTTACTTCATGCATGTGCACACAATCCCACTGGAGTTGACCCAACCTCTGAACAGTGGGAACAGATTCGACAGCTGATGAGATCTAAAAGCTTATTACCCTTTTTTGATAGTGCATATCAGGGTTTTGCTAGTGGTAGCCTTGACACAGATGCACAATCTGTCCGTACATTTGTTGCTGATGGCGGTGAATGCTTGATAGCTCAAAGTTACGCCAAAAATATGGGACTTTATGGGGAGCGTGTTGGTGCCCTTAGCATTGTCTGCAAGTCAGCAGATGTGGCTAGTAAGGTTGAGAGCCAGGTGAAGCTTGTTGTGCGGCCCATGTATTCGAGCCCCCCTATTCATGGAGCATCAATTGTTGCCACCATTCTAAAAAGCAGTGATATGTACAACAACTGGACCATCGAGCTGAAAGAAATGGCTGACCGTATAAAGAGCATGCGCCAACAGTTATTTGAAGCTATACAAGCTAGAGGTACACCTGGTGACTGGAGTCATATTATCAAACAGATTGGGATGTTTACATTTACTGGATTGAACAAGGAGCAAGTTGAATTCATGACCAAAGAGTTCCACATTTACATGACCTCTGATGGGAGAATAAGCATGGCAGGTCTAAGTTCGAAGACAGTGCCTCACCTTGCCGATGCTATGCATGCTGCAGTGACCCGCCTCGGCTAA

Protein Analysis

405

Amino Acids

44.27

Weight (kDa)

6.8

Isoelectric Point (pI)

39.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_1_2 PF00155 31 - 396 6.4e-98 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011825)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1139
AccB1I GGYRCC 2 cut(s) 110, 782
AciI CCGC 4 cut(s) 454, 720, 853, 1207
AclI AACGTT 1 cut(s) 21
AclWI GGATC 5 cut(s) 35, 71, 179, 458, 513
AcsI RAATTY 1 cut(s) 1091
AdeI CACNNNGTG 1 cut(s) 1022
AfaI GTAC 4 cut(s) 322, 703, 926, 1015
AfiI CCNNNNNNNGG 6 cut(s) 50, 124, 218, 401, 881, 1131
AgsI TTSAA 5 cut(s) 424, 490, 995, 1075, 1091
AjnI CCWGG 2 cut(s) 834, 1018
AleI CACNNNNGTG 1 cut(s) 372
Alw21I GWGCWC 2 cut(s) 34, 556
Alw26I GTCTC 1 cut(s) 195
Alw44I GTGCAC 1 cut(s) 552
AlwI GGATC 5 cut(s) 35, 71, 179, 458, 513
Ama87I CYCGRG 2 cut(s) 192, 500
AoxI GGCC 1 cut(s) 854
ApaLI GTGCAC 1 cut(s) 552
ApeKI GCWGC 2 cut(s) 515, 1196
ApoI RAATTY 1 cut(s) 1091
Asp700I GAANNNNTTC 2 cut(s) 207, 600
AspLEI GCGC 3 cut(s) 248, 515, 981
AspS9I GGNCC 2 cut(s) 855, 936
AsuHPI GGTGA 4 cut(s) 734, 850, 1034, 1166
AsuII TTCGAA 1 cut(s) 1160
AvaI CYCGRG 2 cut(s) 192, 500
AvaII GGWCC 1 cut(s) 936
BaeGI GKGCMC 2 cut(s) 556, 787
BanI GGYRCC 2 cut(s) 110, 782
BanII GRGCYC 1 cut(s) 872
BauI CACGAG 1 cut(s) 27
BbsI GAAGAC 2 cut(s) 4, 1169
Bbv12I GWGCWC 2 cut(s) 34, 556
BbvI GCAGC 2 cut(s) 502, 1183
BccI CCATC 5 cut(s) 417, 529, 710, 947, 1124
BcgI CGANNNNNNTGC 2 cut(s) 1150, 1184
BciT130I CCWGG 2 cut(s) 836, 1020
BcoDI GTCTC 1 cut(s) 195
BfaI CTAG 5 cut(s) 81, 176, 666, 819, 1008
BfmI CTRYAG 2 cut(s) 300, 1197
BfoI RGCGCY 2 cut(s) 249, 516
BfuAI ACCTGC 1 cut(s) 1139
BglII AGATCT 1 cut(s) 617
BisI GCNGC 3 cut(s) 516, 854, 1197
BlsI GCNGC 3 cut(s) 517, 855, 1198
Bme1390I CCNGG 2 cut(s) 836, 1020
Bme18I GGWCC 1 cut(s) 936
BmeT110I CYCGRG 2 cut(s) 192, 500
BmgT120I GGNCC 2 cut(s) 855, 936
BmiI GGNNCC 3 cut(s) 112, 407, 784
BmrFI CCNGG 2 cut(s) 836, 1020
BmsI GCATC 3 cut(s) 676, 896, 1174
BoxI GACNNNNGTC 1 cut(s) 1029
BpiI GAAGAC 2 cut(s) 4, 1169
BpmI CTGGAG 3 cut(s) 546, 588, 1048
Bpu10I CCTNAGC 1 cut(s) 788
Bpu14I TTCGAA 1 cut(s) 1160
BsaJI CCNNGG 2 cut(s) 475, 1210
BsaXI ACNNNNNCTCC 2 cut(s) 519, 549
Bsc4I CCNNNNNNNGG 6 cut(s) 50, 124, 218, 401, 881, 1131
Bse1I ACTGG 6 cut(s) 307, 328, 571, 938, 1031, 1072
BseBI CCWGG 2 cut(s) 836, 1020
BseDI CCNNGG 2 cut(s) 475, 1210
BseGI GGATG 2 cut(s) 409, 1059
BseLI CCNNNNNNNGG 6 cut(s) 50, 124, 218, 401, 881, 1131
BseMII CTCAG 2 cut(s) 114, 336
BseNI ACTGG 6 cut(s) 307, 328, 571, 938, 1031, 1072
BseSI GKGCMC 2 cut(s) 556, 787
BseXI GCAGC 2 cut(s) 502, 1183
BsgI GTGCAG 1 cut(s) 501
BshFI GGCC 1 cut(s) 856
BshNI GGYRCC 2 cut(s) 110, 782
BsiHKAI GWGCWC 2 cut(s) 34, 556
BsiHKCI CYCGRG 2 cut(s) 192, 500
BslFI GGGAC 1 cut(s) 774
BslI CCNNNNNNNGG 6 cut(s) 50, 124, 218, 401, 881, 1131
BsmAI GTCTC 1 cut(s) 195
BsmBI CGTCTC 1 cut(s) 195
BsmFI GGGAC 1 cut(s) 774
BsmI GAATGC 1 cut(s) 731
BsnI GGCC 1 cut(s) 856
BsoBI CYCGRG 2 cut(s) 192, 500
Bsp119I TTCGAA 1 cut(s) 1160
Bsp1286I GDGCHC 4 cut(s) 34, 556, 787, 872
Bsp1407I TGTACA 1 cut(s) 924
Bsp143I GATC 7 cut(s) 40, 76, 93, 184, 463, 505, 617
BspACI CCGC 4 cut(s) 454, 720, 853, 1207
BspANI GGCC 1 cut(s) 856
BspCNI CTCAG 2 cut(s) 115, 337
BspHI TCATGA 1 cut(s) 1095
BspLI GGNNCC 3 cut(s) 112, 407, 784
BspMAI CTGCAG 1 cut(s) 1201
BspMI ACCTGC 1 cut(s) 1139
BspPI GGATC 5 cut(s) 35, 71, 179, 458, 513
BspT104I TTCGAA 1 cut(s) 1160
BspT107I GGYRCC 2 cut(s) 110, 782
BsrGI TGTACA 1 cut(s) 924
BsrI ACTGG 6 cut(s) 307, 328, 571, 938, 1031, 1072
BssECI CCNNGG 2 cut(s) 475, 1210
BssMI GATC 7 cut(s) 40, 76, 93, 184, 463, 505, 617
BssSI CACGAG 1 cut(s) 27
Bst2BI CACGAG 1 cut(s) 27
Bst2UI CCWGG 2 cut(s) 836, 1020
Bst4CI ACNGT 7 cut(s) 61, 272, 304, 591, 965, 987, 1168
BstAPI GCANNNNNTGC 1 cut(s) 798
BstAUI TGTACA 1 cut(s) 924
BstBI TTCGAA 1 cut(s) 1160
BstC8I GCNNGC 4 cut(s) 433, 497, 977, 1194
BstDEI CTNAG 5 cut(s) 123, 259, 345, 788, 1154
BstDSI CCRYGG 1 cut(s) 475
BstF5I GGATG 2 cut(s) 409, 1059
BstH2I RGCGCY 2 cut(s) 249, 516
BstHHI GCGC 3 cut(s) 248, 515, 981
BstKTI GATC 7 cut(s) 43, 79, 96, 187, 466, 508, 620
BstMAI GTCTC 1 cut(s) 195
BstMBI GATC 7 cut(s) 40, 76, 93, 184, 463, 505, 617
BstMWI GCNNNNNNNGC 6 cut(s) 726, 798, 815, 850, 1004, 1193
BstNI CCWGG 2 cut(s) 836, 1020
BstNSI RCATGY 3 cut(s) 552, 979, 1196
BstPAI GACNNNNGTC 1 cut(s) 1029
BstSCI CCNGG 2 cut(s) 834, 1018
BstSFI CTRYAG 2 cut(s) 300, 1197
BstSLI GKGCMC 2 cut(s) 556, 787
BstV1I GCAGC 2 cut(s) 502, 1183
BstV2I GAAGAC 2 cut(s) 4, 1169
BstX2I RGATCY 3 cut(s) 40, 505, 617
BstXI CCANNNNNNTGG 1 cut(s) 757
BstYI RGATCY 3 cut(s) 40, 505, 617
BsuRI GGCC 1 cut(s) 856
BtgI CCRYGG 1 cut(s) 475
BtsCI GGATG 2 cut(s) 409, 1059
BtsI GCAGTG 2 cut(s) 922, 1206
BtsIMutI CAGTG 6 cut(s) 314, 564, 596, 922, 1173, 1206
BveI ACCTGC 1 cut(s) 1139
Cac8I GCNNGC 4 cut(s) 433, 497, 977, 1194
CciI TCATGA 1 cut(s) 1095
CfoI GCGC 3 cut(s) 248, 515, 981
Cfr13I GGNCC 2 cut(s) 855, 936
CsiI ACCWGGT 1 cut(s) 1018
Csp6I GTAC 4 cut(s) 321, 702, 925, 1014
CspCI CAANNNNNGTGG 2 cut(s) 553, 588
CviAII CATG 9 cut(s) 545, 549, 859, 881, 976, 1096, 1120, 1144, 1193
CviQI GTAC 4 cut(s) 321, 702, 925, 1014
DdeI CTNAG 5 cut(s) 123, 259, 345, 788, 1154
DpnI GATC 7 cut(s) 42, 78, 95, 186, 465, 507, 619
DpnII GATC 7 cut(s) 40, 76, 93, 184, 463, 505, 617
DraIII CACNNNGTG 1 cut(s) 1022
Eco24I GRGCYC 1 cut(s) 872
Eco47I GGWCC 1 cut(s) 936
Eco88I CYCGRG 2 cut(s) 192, 500
EcoRI GAATTC 1 cut(s) 1091
EcoRII CCWGG 2 cut(s) 834, 1018
EcoT22I ATGCAT 2 cut(s) 550, 1194
EcoT38I GRGCYC 1 cut(s) 872
Esp3I CGTCTC 1 cut(s) 195
FaeI CATG 9 cut(s) 548, 552, 862, 884, 979, 1099, 1123, 1147, 1196
FalI AAGNNNNNCTT 2 cut(s) 242, 274
FaqI GGGAC 1 cut(s) 774
FatI CATG 9 cut(s) 544, 548, 858, 880, 975, 1095, 1119, 1143, 1192
FauI CCCGC 1 cut(s) 1214
Fnu4HI GCNGC 3 cut(s) 516, 854, 1197
FokI GGATG 2 cut(s) 396, 1066
FriOI GRGCYC 1 cut(s) 872
Fsp4HI GCNGC 3 cut(s) 516, 854, 1197
FspBI CTAG 5 cut(s) 81, 176, 666, 819, 1008
GlaI GCGC 3 cut(s) 247, 514, 980
GluI GCNGC 3 cut(s) 516, 854, 1197
GsuI CTGGAG 3 cut(s) 546, 588, 1048
HaeII RGCGCY 2 cut(s) 249, 516
HaeIII GGCC 1 cut(s) 856
HhaI GCGC 3 cut(s) 248, 515, 981
Hin1II CATG 9 cut(s) 548, 552, 862, 884, 979, 1099, 1123, 1147, 1196
Hin6I GCGC 3 cut(s) 246, 513, 979
HinP1I GCGC 3 cut(s) 246, 513, 979
HincII GTYRAC 1 cut(s) 574
HindII GTYRAC 1 cut(s) 574
HindIII AAGCTT 2 cut(s) 625, 842
HinfI GANTC 3 cut(s) 5, 601, 1030
HphI GGTGA 4 cut(s) 734, 850, 1034, 1166
Hpy166II GTNNAC 5 cut(s) 181, 554, 574, 1016, 1059
Hpy188I TCNGA 3 cut(s) 229, 586, 1129
Hpy188III TCNNGA 5 cut(s) 35, 146, 482, 525, 1096
Hpy8I GTNNAC 5 cut(s) 181, 554, 574, 1016, 1059
HpyAV CCTTC 1 cut(s) 122
HpyCH4III ACNGT 7 cut(s) 61, 272, 304, 591, 965, 987, 1168
HpyCH4IV ACGT 1 cut(s) 21
HpyCH4V TGCA 9 cut(s) 470, 518, 548, 554, 650, 689, 801, 1192, 1199
HpyF10VI GCNNNNNNNGC 6 cut(s) 726, 798, 815, 850, 1004, 1193
HpyF3I CTNAG 5 cut(s) 123, 259, 345, 788, 1154
HpySE526I ACGT 1 cut(s) 21
Hsp92II CATG 9 cut(s) 548, 552, 862, 884, 979, 1099, 1123, 1147, 1196
HspAI GCGC 3 cut(s) 246, 513, 979
Kzo9I GATC 7 cut(s) 40, 76, 93, 184, 463, 505, 617
LmnI GCTCC 5 cut(s) 37, 527, 772, 884, 1081
Lsp1109I GCAGC 2 cut(s) 502, 1183
LweI GCATC 3 cut(s) 676, 896, 1174
MabI ACCWGGT 1 cut(s) 1018
MaeI CTAG 5 cut(s) 81, 176, 666, 819, 1008
MaeII ACGT 1 cut(s) 21
MaeIII GTNAC 5 cut(s) 55, 295, 743, 1022, 1201
MalI GATC 7 cut(s) 42, 78, 95, 186, 465, 507, 619
MboI GATC 7 cut(s) 40, 76, 93, 184, 463, 505, 617
MboII GAAGA 3 cut(s) 4, 50, 1174
MfeI CAATTG 1 cut(s) 891
MflI RGATCY 3 cut(s) 40, 505, 617
MhlI GDGCHC 4 cut(s) 34, 556, 787, 872
MluCI AATT 3 cut(s) 97, 891, 1091
MlyI GAGTC 1 cut(s) 1039
MnlI CCTC 7 cut(s) 118, 147, 496, 592, 1004, 1135, 1182
Mph1103I ATGCAT 2 cut(s) 550, 1194
MroXI GAANNNNTTC 2 cut(s) 207, 600
MseI TTAA 3 cut(s) 90, 234, 242
MslI CAYNNNNRTG 3 cut(s) 372, 549, 1118
MspA1I CMGCKG 1 cut(s) 610
MspR9I CCNGG 2 cut(s) 836, 1020
MunI CAATTG 1 cut(s) 891
Mva1269I GAATGC 1 cut(s) 731
MvaI CCWGG 2 cut(s) 836, 1020
MwoI GCNNNNNNNGC 6 cut(s) 726, 798, 815, 850, 1004, 1193
NdeII GATC 7 cut(s) 40, 76, 93, 184, 463, 505, 617
NlaIII CATG 9 cut(s) 548, 552, 862, 884, 979, 1099, 1123, 1147, 1196
NlaIV GGNNCC 3 cut(s) 112, 407, 784
NmeAIII GCCGAG 1 cut(s) 1191
NmuCI GTSAC 2 cut(s) 1022, 1201
NsiI ATGCAT 2 cut(s) 550, 1194
NspI RCATGY 3 cut(s) 552, 979, 1196
NspV TTCGAA 1 cut(s) 1160
OliI CACNNNNGTG 1 cut(s) 372
PaeI GCATGC 2 cut(s) 979, 1196
PaeR7I CTCGAG 1 cut(s) 500
PagI TCATGA 1 cut(s) 1095
PctI GAATGC 1 cut(s) 731
PdmI GAANNNNTTC 2 cut(s) 207, 600
PfeI GAWTC 2 cut(s) 5, 601
PkrI GCNGC 3 cut(s) 517, 855, 1198
PleI GAGTC 1 cut(s) 1038
PpsI GAGTC 1 cut(s) 1038
PshAI GACNNNNGTC 1 cut(s) 1029
Psp1406I AACGTT 1 cut(s) 21
Psp6I CCWGG 2 cut(s) 834, 1018
PspGI CCWGG 2 cut(s) 834, 1018
PspN4I GGNNCC 3 cut(s) 112, 407, 784
PspPI GGNCC 2 cut(s) 855, 936
PspXI VCTCGAGB 1 cut(s) 500
PstI CTGCAG 1 cut(s) 1201
PsuI RGATCY 3 cut(s) 40, 505, 617
PvuII CAGCTG 1 cut(s) 610
RsaI GTAC 4 cut(s) 322, 703, 926, 1015
RsaNI GTAC 4 cut(s) 321, 702, 925, 1014
RseI CAYNNNNRTG 3 cut(s) 372, 549, 1118
SaqAI TTAA 3 cut(s) 90, 234, 242
SatI GCNGC 3 cut(s) 516, 854, 1197
Sau3AI GATC 7 cut(s) 40, 76, 93, 184, 463, 505, 617
Sau96I GGNCC 2 cut(s) 855, 936
SchI GAGTC 1 cut(s) 1039
ScrFI CCNGG 2 cut(s) 836, 1020
SduI GDGCHC 4 cut(s) 34, 556, 787, 872
SexAI ACCWGGT 1 cut(s) 1018
SfaNI GCATC 3 cut(s) 676, 896, 1174
SfcI CTRYAG 2 cut(s) 300, 1197
Sfr274I CTCGAG 1 cut(s) 500
SfuI TTCGAA 1 cut(s) 1160
SinI GGWCC 1 cut(s) 936
SlaI CTCGAG 1 cut(s) 500
SmiMI CAYNNNNRTG 3 cut(s) 372, 549, 1118
SmlI CTYRAG 1 cut(s) 500
SmoI CTYRAG 1 cut(s) 500
SphI GCATGC 2 cut(s) 979, 1196
Sse9I AATT 3 cut(s) 97, 891, 1091
SsiI CCGC 4 cut(s) 454, 720, 853, 1207
SspMI CTAG 5 cut(s) 81, 176, 666, 819, 1008
StyD4I CCNGG 2 cut(s) 834, 1018
TaaI ACNGT 7 cut(s) 61, 272, 304, 591, 965, 987, 1168
TaiI ACGT 1 cut(s) 24
TaqI TCGA 5 cut(s) 501, 604, 866, 942, 1160
TasI AATT 3 cut(s) 97, 891, 1091
TatI WGTACW 1 cut(s) 924
TauI GCSGC 1 cut(s) 856
TfiI GAWTC 2 cut(s) 5, 601
Tru1I TTAA 3 cut(s) 90, 234, 242
Tru9I TTAA 3 cut(s) 90, 234, 242
TscAI CASTG 6 cut(s) 314, 571, 596, 922, 1173, 1206
TseFI GTSAC 2 cut(s) 1022, 1201
TseI GCWGC 2 cut(s) 515, 1196
Tsp45I GTSAC 2 cut(s) 1022, 1201
TspDTI ATGAA 3 cut(s) 533, 869, 1084
TspGWI ACGGA 2 cut(s) 177, 689
TspRI CASTG 6 cut(s) 314, 571, 596, 922, 1173, 1206
VneI GTGCAC 1 cut(s) 552
VpaK11BI GGWCC 1 cut(s) 936
XapI RAATTY 1 cut(s) 1091
XceI RCATGY 3 cut(s) 552, 979, 1196
XcmI CCANNNNNNNNNTGG 2 cut(s) 314, 396
XhoI CTCGAG 1 cut(s) 500
XmnI GAANNNNTTC 2 cut(s) 207, 600
XspI CTAG 5 cut(s) 81, 176, 666, 819, 1008
Zsp2I ATGCAT 2 cut(s) 550, 1194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.