Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0011825

Physical Location & Seq

Genomic Coordinates Forward (+)

10733772 .. 10736592

Gene Structure 2821 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1117300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGAGTCCCAAGCCGGCGGTTCCGTATTCTCCCACGTCCCTCAGGTCCCTGAAGTCCCACTTTACGCGATGCAGGCTGCTTATGGCAAAGACCCAAGTCCTCAGAAGCTGAATTTGGGCATTGGTGTTTACAGAACTGAGGATGGGAGACCTGTCCTTTTAGATGTGGTTAGTCGAGCGGAGCGGTTACTAGTCAATGACTTGTCCAGTTTTAAGGAGTATCTTCCTATTACTGGAATGCCAGATTTCAACAGATTGAGTGCTGCACTCGTTTTGGGTGCTGACAGCCCTGCTATAAGGGACAATAGAGTGACTACTGCCCAGTGCTTGTCTGGTAGCGGTTCAATAAGGATTGGAGCCGATTTTTTAGCAAAGCATTACGGTCAACATCGTATAGTGTACATGTCCCAGCAAACATATGGAAACCACCCAAATTTTTTCTCAGCGGCGGGGATAGCTATTAAGACTTACCGTTACTATGACCCAGGAACGCGTGGACTGGACTTTCAAGGCATGCTGGAAGATCTTCGTTCTTCCCCAACAGGAGCTATCGTGCTTCTCCAAGCATGTGCGCAAAACCCCACTGGTGTTGATCCAACTATGTCACAGTGGGAGCAGATAAGACAGTTGATCAGATCAAAAGGGTTGTTACCGTTTTTTGACTGTGCTTATCAGGGTTTTGTCAGTGGAAATCTGGAAGAGGATGCGCAATCTATTCGCCTTTTTGTTGCTGATGGTGGTGAAAGCCTTATAGCCCAGTCATATTCAAAGAATATGGGACTTTACGGAGAACGTGTTGGGGCACTCAGCATTGTTTGCAAGACAGCAGAAGTGGCTAGTAATGTCGAAAGCCAGCTGAAACTCGTGATCAGGCCCATGTATTCTAACCCACCCATTCATGGGGCAGCCATAGTGGCTGCTATCCTAAAGGACAGGGATATGTACAATGAATGGAGTAATGAAGTGAAGGCAATGGCTGACCGCCTTATGAGCATGCGCCAACACCTATTCAATGCGCTGCGTGACAAAGGCACTGCAATCTCTCTCTCCCTCTCTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00270 ko00330 ko00350 ko00360 ko00400 ko00710 ko00950 ko00960 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00220 map00250 map00270 map00330 map00350 map00360 map00400 map00710 map00950 map00960 map01100 map01110 map01120 map01130 map01200 map01210 map01230

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

354

Amino Acids

38.64

Weight (kDa)

6.6

Isoelectric Point (pI)

38.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_1_2	PF00155	35 - 345	5e-75	Aminotransferase class I and II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62800 AT1G62800 AT1G62800 AT5G19550
fragaria_vesca	FvH4_2g36020
malus_domestica	MD08G1117300.v1.1
prunus_persica	Prupe.1G451800_v2.0.a1 Prupe.1G451800_v2.0.a1
pyrus_communis	pycom08g09790
rosa_chinensis	RchiOBHm_Chr6g0305831
rosa_laevigata	RLG00000010854
rosa_roxburghii	Rroxscaffold_7G00162290
rosa_rugosa	Rorug06G0344000 Rorug06G0344100.1 Rorug06G0344200
rosa_samantha	Rh6AG456000 Rh6BG445100 Rh6CG470000
rosa_wichuraiana	Rw6G039790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	573, 708
AccBSI	CCGCTC	2 cut(s)	179, 184
AccII	CGCG	2 cut(s)	68, 493
AciI	CCGC	7 cut(s)	18, 179, 184, 339, 446, 449, 982
AclWI	GGATC	1 cut(s)	587
AcsI	RAATTY	2 cut(s)	112, 433
AcuI	CTGAAG	1 cut(s)	72
AfaI	GTAC	2 cut(s)	401, 944
AfiI	CCNNNNNNNGG	3 cut(s)	233, 899, 900
AflIII	ACRYGT	3 cut(s)	402, 491, 793
AgsI	TTSAA	5 cut(s)	250, 345, 509, 768, 1012
AhlI	ACTAGT	1 cut(s)	190
AjiI	CACGTC	1 cut(s)	37
AjnI	CCWGG	1 cut(s)	484
AjuI	GAANNNNNNNTTGG	2 cut(s)	98, 130
AluBI	AGCT	4 cut(s)	109, 458, 548, 856
AluI	AGCT	4 cut(s)	109, 458, 548, 856
Alw26I	GTCTC	1 cut(s)	142
AlwI	GGATC	1 cut(s)	587
AlwNI	CAGNNNCTG	1 cut(s)	109
AoxI	GGCC	1 cut(s)	872
ApeKI	GCWGC	5 cut(s)	77, 263, 905, 917, 1018
ApoI	RAATTY	2 cut(s)	112, 433
Asp700I	GAANNNNTTC	1 cut(s)	525
AspLEI	GCGC	4 cut(s)	574, 709, 999, 1018
AspS9I	GGNCC	2 cut(s)	46, 873
AsuHPI	GGTGA	1 cut(s)	752
AvaII	GGWCC	1 cut(s)	46
AxyI	CCTNAGG	1 cut(s)	42
BaeGI	GKGCMC	1 cut(s)	805
BauI	CACGAG	1 cut(s)	863
BbvI	GCAGC	5 cut(s)	64, 250, 904, 917, 1005
BccI	CCATC	2 cut(s)	137, 728
BcgI	CGANNNNNNTGC	2 cut(s)	698, 732
BciT130I	CCWGG	1 cut(s)	486
BclI	TGATCA	2 cut(s)	630, 867
BcoDI	GTCTC	1 cut(s)	142
BcuI	ACTAGT	1 cut(s)	190
BfaI	CTAG	2 cut(s)	191, 837
BglI	GCCNNNNNGGC	1 cut(s)	914
BglII	AGATCT	1 cut(s)	523
BisI	GCNGC	6 cut(s)	78, 264, 447, 906, 918, 1019
BlsI	GCNGC	6 cut(s)	79, 265, 448, 907, 919, 1020
Bme1390I	CCNGG	1 cut(s)	486
Bme18I	GGWCC	1 cut(s)	46
BmgBI	CACGTC	1 cut(s)	37
BmgT120I	GGNCC	2 cut(s)	46, 873
BmiI	GGNNCC	3 cut(s)	22, 48, 358
BmrFI	CCNGG	1 cut(s)	486
BmrI	ACTGGG	2 cut(s)	316, 751
BmsI	GCATC	2 cut(s)	60, 694
BmuI	ACTGGG	2 cut(s)	316, 751
BoxI	GACNNNNGTC	1 cut(s)	96
BsaI	GGTCTC	1 cut(s)	142
BsaJI	CCNNGG	1 cut(s)	484
BsaXI	ACNNNNNCTCC	4 cut(s)	537, 567, 780, 810
Bsc4I	CCNNNNNNNGG	3 cut(s)	233, 899, 900
Bse118I	RCCGGY	1 cut(s)	14
Bse1I	ACTGG	6 cut(s)	207, 238, 322, 504, 589, 757
Bse21I	CCTNAGG	1 cut(s)	42
Bse3DI	GCAATG	1 cut(s)	978
BseBI	CCWGG	1 cut(s)	486
BseDI	CCNNGG	1 cut(s)	484
BseGI	GGATG	2 cut(s)	148, 709
BseLI	CCNNNNNNNGG	3 cut(s)	233, 899, 900
BseMI	GCAATG	1 cut(s)	978
BseMII	CTCAG	5 cut(s)	56, 116, 129, 456, 820
BseNI	ACTGG	6 cut(s)	207, 238, 322, 504, 589, 757
BseSI	GKGCMC	1 cut(s)	805
BseXI	GCAGC	5 cut(s)	64, 250, 904, 917, 1005
BseYI	CCCAGC	1 cut(s)	408
BsgI	GTGCAG	1 cut(s)	249
Bsh1236I	CGCG	2 cut(s)	68, 493
BshFI	GGCC	1 cut(s)	874
BsiSI	CCGG	1 cut(s)	15
BslFI	GGGAC	6 cut(s)	23, 32, 41, 314, 391, 792
BslI	CCNNNNNNNGG	3 cut(s)	233, 899, 900
BsmAI	GTCTC	1 cut(s)	142
BsmFI	GGGAC	6 cut(s)	23, 32, 41, 314, 391, 792
BsmI	GAATGC	1 cut(s)	243
BsnI	GGCC	1 cut(s)	874
Bso31I	GGTCTC	1 cut(s)	142
Bsp1286I	GDGCHC	1 cut(s)	805
Bsp1407I	TGTACA	2 cut(s)	399, 942
Bsp143I	GATC	5 cut(s)	523, 592, 630, 635, 867
BspACI	CCGC	7 cut(s)	18, 179, 184, 339, 446, 449, 982
BspANI	GGCC	1 cut(s)	874
BspCNI	CTCAG	5 cut(s)	55, 115, 130, 455, 819
BspFNI	CGCG	2 cut(s)	68, 493
BspLI	GGNNCC	3 cut(s)	22, 48, 358
BspPI	GGATC	1 cut(s)	587
BspTNI	GGTCTC	1 cut(s)	142
BsrBI	CCGCTC	2 cut(s)	179, 184
BsrDI	GCAATG	1 cut(s)	978
BsrFI	RCCGGY	1 cut(s)	14
BsrGI	TGTACA	2 cut(s)	399, 942
BsrI	ACTGG	6 cut(s)	207, 238, 322, 504, 589, 757
BssAI	RCCGGY	1 cut(s)	14
BssECI	CCNNGG	1 cut(s)	484
BssMI	GATC	5 cut(s)	523, 592, 630, 635, 867
BssSI	CACGAG	1 cut(s)	863
Bst2BI	CACGAG	1 cut(s)	863
Bst2UI	CCWGG	1 cut(s)	486
Bst4CI	ACNGT	6 cut(s)	383, 473, 609, 627, 654, 665
Bst6I	CTCTTC	1 cut(s)	693
BstAPI	GCANNNNNTGC	1 cut(s)	816
BstAUI	TGTACA	2 cut(s)	399, 942
BstC8I	GCNNGC	5 cut(s)	16, 75, 515, 854, 995
BstDEI	CTNAG	5 cut(s)	42, 102, 138, 442, 806
BstF5I	GGATG	2 cut(s)	148, 709
BstFNI	CGCG	2 cut(s)	68, 493
BstHHI	GCGC	4 cut(s)	574, 709, 999, 1018
BstKTI	GATC	5 cut(s)	526, 595, 633, 638, 870
BstMAI	GTCTC	1 cut(s)	142
BstMBI	GATC	5 cut(s)	523, 592, 630, 635, 867
BstMWI	GCNNNNNNNGC	6 cut(s)	74, 455, 816, 833, 914, 990
BstNI	CCWGG	1 cut(s)	486
BstNSI	RCATGY	4 cut(s)	406, 517, 570, 997
BstPAI	GACNNNNGTC	1 cut(s)	96
BstSCI	CCNGG	1 cut(s)	484
BstSLI	GKGCMC	1 cut(s)	805
BstUI	CGCG	2 cut(s)	68, 493
BstV1I	GCAGC	5 cut(s)	64, 250, 904, 917, 1005
BstX2I	RGATCY	1 cut(s)	523
BstYI	RGATCY	1 cut(s)	523
Bsu36I	CCTNAGG	1 cut(s)	42
BsuRI	GGCC	1 cut(s)	874
BtgZI	GCGATG	1 cut(s)	83
BtrI	CACGTC	1 cut(s)	37
BtsCI	GGATG	2 cut(s)	148, 709
BtsI	GCAGTG	1 cut(s)	1032
BtsIMutI	CAGTG	5 cut(s)	329, 582, 614, 691, 1032
Cac8I	GCNNGC	5 cut(s)	16, 75, 515, 854, 995
CaiI	CAGNNNCTG	1 cut(s)	109
CfoI	GCGC	4 cut(s)	574, 709, 999, 1018
Cfr10I	RCCGGY	1 cut(s)	14
Cfr13I	GGNCC	2 cut(s)	46, 873
Csp6I	GTAC	2 cut(s)	400, 943
CspCI	CAANNNNNGTGG	2 cut(s)	571, 606
CviAII	CATG	6 cut(s)	403, 514, 567, 877, 899, 994
CviQI	GTAC	2 cut(s)	400, 943
DdeI	CTNAG	5 cut(s)	42, 102, 138, 442, 806
DpnI	GATC	5 cut(s)	525, 594, 632, 637, 869
DpnII	GATC	5 cut(s)	523, 592, 630, 635, 867
Eam1104I	CTCTTC	1 cut(s)	693
EarI	CTCTTC	1 cut(s)	693
Eco31I	GGTCTC	1 cut(s)	142
Eco47I	GGWCC	1 cut(s)	46
Eco57I	CTGAAG	1 cut(s)	72
Eco81I	CCTNAGG	1 cut(s)	42
EcoO109I	RGGNCCY	1 cut(s)	46
EcoRII	CCWGG	1 cut(s)	484
FaeI	CATG	6 cut(s)	406, 517, 570, 880, 902, 997
FalI	AAGNNNNNCTT	2 cut(s)	45, 77
FaqI	GGGAC	6 cut(s)	23, 32, 41, 314, 391, 792
FatI	CATG	6 cut(s)	402, 513, 566, 876, 898, 993
FauI	CCCGC	1 cut(s)	442
FauNDI	CATATG	1 cut(s)	418
FbaI	TGATCA	2 cut(s)	630, 867
Fnu4HI	GCNGC	6 cut(s)	78, 264, 447, 906, 918, 1019
FokI	GGATG	2 cut(s)	155, 716
Fsp4HI	GCNGC	6 cut(s)	78, 264, 447, 906, 918, 1019
FspBI	CTAG	2 cut(s)	191, 837
FspI	TGCGCA	2 cut(s)	573, 708
GlaI	GCGC	4 cut(s)	573, 708, 998, 1017
GluI	GCNGC	6 cut(s)	78, 264, 447, 906, 918, 1019
GsaI	CCCAGC	1 cut(s)	412
HaeIII	GGCC	1 cut(s)	874
HapII	CCGG	1 cut(s)	15
HhaI	GCGC	4 cut(s)	574, 709, 999, 1018
Hin1II	CATG	6 cut(s)	406, 517, 570, 880, 902, 997
Hin6I	GCGC	4 cut(s)	572, 707, 997, 1016
HinP1I	GCGC	4 cut(s)	572, 707, 997, 1016
HincII	GTYRAC	1 cut(s)	386
HindII	GTYRAC	1 cut(s)	386
HinfI	GANTC	1 cut(s)	5
HpaII	CCGG	1 cut(s)	15
HphI	GGTGA	1 cut(s)	752
Hpy166II	GTNNAC	4 cut(s)	130, 386, 400, 497
Hpy188I	TCNGA	3 cut(s)	105, 635, 1061
Hpy188III	TCNNGA	2 cut(s)	695, 865
Hpy8I	GTNNAC	4 cut(s)	130, 386, 400, 497
HpyAV	CCTTC	1 cut(s)	961
HpyCH4III	ACNGT	6 cut(s)	383, 473, 609, 627, 654, 665
HpyCH4IV	ACGT	2 cut(s)	36, 793
HpyCH4V	TGCA	4 cut(s)	73, 266, 819, 1037
HpyF10VI	GCNNNNNNNGC	6 cut(s)	74, 455, 816, 833, 914, 990
HpyF3I	CTNAG	5 cut(s)	42, 102, 138, 442, 806
HpySE526I	ACGT	2 cut(s)	36, 793
Hsp92II	CATG	6 cut(s)	406, 517, 570, 880, 902, 997
HspAI	GCGC	4 cut(s)	572, 707, 997, 1016
KroI	GCCGGC	1 cut(s)	14
KroNI	GCCGGC	1 cut(s)	16
Ksp22I	TGATCA	2 cut(s)	630, 867
Kzo9I	GATC	5 cut(s)	523, 592, 630, 635, 867
LmnI	GCTCC	4 cut(s)	181, 356, 545, 613
Lsp1109I	GCAGC	5 cut(s)	64, 250, 904, 917, 1005
LweI	GCATC	2 cut(s)	60, 694
MaeI	CTAG	2 cut(s)	191, 837
MaeII	ACGT	2 cut(s)	36, 793
MaeIII	GTNAC	6 cut(s)	186, 310, 473, 603, 648, 1022
MalI	GATC	5 cut(s)	525, 594, 632, 637, 869
MbiI	CCGCTC	2 cut(s)	179, 184
MboI	GATC	5 cut(s)	523, 592, 630, 635, 867
MboII	GAAGA	5 cut(s)	215, 518, 525, 533, 710
MflI	RGATCY	1 cut(s)	523
MhlI	GDGCHC	1 cut(s)	805
MluCI	AATT	2 cut(s)	112, 433
MluI	ACGCGT	1 cut(s)	491
MlyI	GAGTC	1 cut(s)	14
MmeI	TCCRAC	1 cut(s)	620
MnlI	CCTC	5 cut(s)	51, 111, 133, 694, 1061
MroNI	GCCGGC	1 cut(s)	14
MroXI	GAANNNNTTC	1 cut(s)	525
MseI	TTAA	2 cut(s)	213, 462
MspA1I	CMGCKG	2 cut(s)	446, 856
MspI	CCGG	1 cut(s)	15
MspR9I	CCNGG	1 cut(s)	486
Mva1269I	GAATGC	1 cut(s)	243
MvaI	CCWGG	1 cut(s)	486
MvnI	CGCG	2 cut(s)	68, 493
MwoI	GCNNNNNNNGC	6 cut(s)	74, 455, 816, 833, 914, 990
NaeI	GCCGGC	1 cut(s)	16
NdeI	CATATG	1 cut(s)	418
NdeII	GATC	5 cut(s)	523, 592, 630, 635, 867
NgoMIV	GCCGGC	1 cut(s)	14
NlaIII	CATG	6 cut(s)	406, 517, 570, 880, 902, 997
NlaIV	GGNNCC	3 cut(s)	22, 48, 358
NmuCI	GTSAC	3 cut(s)	310, 603, 1022
NsbI	TGCGCA	2 cut(s)	573, 708
NspI	RCATGY	4 cut(s)	406, 517, 570, 997
PaeI	GCATGC	2 cut(s)	517, 997
PciI	ACATGT	1 cut(s)	402
PctI	GAATGC	1 cut(s)	243
PdiI	GCCGGC	1 cut(s)	16
PdmI	GAANNNNTTC	1 cut(s)	525
PkrI	GCNGC	6 cut(s)	79, 265, 448, 907, 919, 1020
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
PpuMI	RGGWCCY	1 cut(s)	46
PscI	ACATGT	1 cut(s)	402
PshAI	GACNNNNGTC	1 cut(s)	96
Psp5II	RGGWCCY	1 cut(s)	46
Psp6I	CCWGG	1 cut(s)	484
PspFI	CCCAGC	1 cut(s)	408
PspGI	CCWGG	1 cut(s)	484
PspN4I	GGNNCC	3 cut(s)	22, 48, 358
PspPI	GGNCC	2 cut(s)	46, 873
PspPPI	RGGWCCY	1 cut(s)	46
PstNI	CAGNNNCTG	1 cut(s)	109
PsuI	RGATCY	1 cut(s)	523
PvuII	CAGCTG	1 cut(s)	856
RsaI	GTAC	2 cut(s)	401, 944
RsaNI	GTAC	2 cut(s)	400, 943
SaqAI	TTAA	2 cut(s)	213, 462
SatI	GCNGC	6 cut(s)	78, 264, 447, 906, 918, 1019
Sau3AI	GATC	5 cut(s)	523, 592, 630, 635, 867
Sau96I	GGNCC	2 cut(s)	46, 873
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	1 cut(s)	486
SduI	GDGCHC	1 cut(s)	805
SetI	ASST	9 cut(s)	39, 48, 111, 154, 460, 550, 796, 858, 1008
SfaNI	GCATC	2 cut(s)	60, 694
SinI	GGWCC	1 cut(s)	46
SpeI	ACTAGT	1 cut(s)	190
SphI	GCATGC	2 cut(s)	517, 997
Sse9I	AATT	2 cut(s)	112, 433
SsiI	CCGC	7 cut(s)	18, 179, 184, 339, 446, 449, 982
SspMI	CTAG	2 cut(s)	191, 837
StyD4I	CCNGG	1 cut(s)	484
TaaI	ACNGT	6 cut(s)	383, 473, 609, 627, 654, 665
TaiI	ACGT	2 cut(s)	39, 796
TaqI	TCGA	2 cut(s)	175, 846
TasI	AATT	2 cut(s)	112, 433
TatI	WGTACW	2 cut(s)	399, 942
TauI	GCSGC	1 cut(s)	449
Tru1I	TTAA	2 cut(s)	213, 462
Tru9I	TTAA	2 cut(s)	213, 462
TscAI	CASTG	5 cut(s)	329, 589, 614, 691, 1039
TseFI	GTSAC	3 cut(s)	310, 603, 1022
TseI	GCWGC	5 cut(s)	77, 263, 905, 917, 1018
Tsp45I	GTSAC	3 cut(s)	310, 603, 1022
TspDTI	ATGAA	3 cut(s)	887, 963, 975
TspGWI	ACGGA	2 cut(s)	13, 801
TspRI	CASTG	5 cut(s)	329, 589, 614, 691, 1039
VpaK11BI	GGWCC	1 cut(s)	46
XapI	RAATTY	2 cut(s)	112, 433
XceI	RCATGY	4 cut(s)	406, 517, 570, 997
XcmI	CCANNNNNNNNNTGG	2 cut(s)	329, 416
XmnI	GAANNNNTTC	1 cut(s)	525
XspI	CTAG	2 cut(s)	191, 837

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.