Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0011825

Physical Location & Seq

Genomic Coordinates Forward (+)

38029681 .. 38033361

Gene Structure 3681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G451800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGGAGATGGAGTCCCGAGATGGTGGTTCTGTATTTGCCCACATTCCTAAGGTTCCTGAAGTACCACTTTATGCGTTGCAGGTTGCTTATGGCAAAGACCCGAGTCCCCTGAAGCTGAATTTGGGCTTTGGTGTTTATAGAACAGAGGATGGGAAGCCTTTTATTTTGAATGTAGTTAGAAGAGTGGAGCGCTTACTAGTTAATGACATGTCCAATTTTAAGGAGTATCTTCCTATTACCGGAATCGCAGAATTCAACAGATGGAGTGCTAGACTCATTTTGGGTGCTGACAGCCCTGCTATTAAGGAGAATAGAGTCACCACTGTCCAATGCTTGTCTGGTACTGGCTCATTGAGGATCGGAGCTGAGTTTTTAGCGAAATATTACCCCCAACACCATACAGTGTACATGTCCCAGCCAACATATGGAAACCACCCAAATTTGTTCTCTGTGGCAGGGCTAGCAATAAAAACTTATCGTTACTATGACCCAGGAACATGTGGACTGGACTTTCAAGGCATGTTGGAAGATCTCCAATCAGCCCCATCCGGAGCTATCGTGCTTCTCCAAGCGTGTGCTCATAACCCTACTGGTGTTGATCCAACTATTCCACAGTGGGAGCAGATAAGACAATTGATGAGATCAAAAGGGTTGTTACCTTTCTTTGATTCTGCTTATCAGGGTTTTGTCAGTGGAAATCTGGATGACGATGCCCAATCTATTCGTCTGTTTGTTGCTGATGGCGGCGAATGCCTTATAGCCCAATCATATTCAAAGATTATGGGGCTTTATGGTGAACGTGTTGGTGCACTCAGCATTGTTTGCAAGACAGCAGACGTGGCTAGCCATGTTGAAAGCCAGCTGAAACTTGTGATCAGGCCCATGTATTCTAACCCACCCATTCATGGGGCAGCCATCGCGGCTGCCATCCTAAAGGACAGGGATTTGTACAACGAATGGAGTATAGAAGTGAAGGTAATGAATGACCGCCTTATTAGCATGCGCCAACACCTATTCGATGCACTGTGTGATAAAGGTACTCCTGGTGACTGGAGTCACATAACCAAACATGTGGGGATGTTTACTTTCTCTGGATTGAACCCTGCACAAGTTGCATTCATGACAAAAGAGTACCATATCTACATGCCATCTGATGGGAGGATTAACATGGCGGGTCTTGGTCCTAAGACAGTTCCTCTTCTTGTAGATGCAATACATGCAGCTGTTACCACCCTTTGTCTAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00270 ko00330 ko00350 ko00360 ko00400 ko00710 ko00950 ko00960 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00220 map00250 map00270 map00330 map00350 map00360 map00400 map00710 map00950 map00960 map01100 map01110 map01120 map01130 map01200 map01210 map01230

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

416

Amino Acids

45.76

Weight (kDa)

6.46

Isoelectric Point (pI)

42.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62800 AT1G62800 AT1G62800 AT5G19550
fragaria_vesca	FvH4_2g36020
malus_domestica	MD08G1117300.v1.1
prunus_persica	Prupe.1G451800_v2.0.a1 Prupe.1G451800_v2.0.a1
pyrus_communis	pycom08g09790
rosa_chinensis	RchiOBHm_Chr6g0305831
rosa_laevigata	RLG00000010854
rosa_roxburghii	Rroxscaffold_7G00162290
rosa_rugosa	Rorug06G0344000 Rorug06G0344100.1 Rorug06G0344200
rosa_samantha	Rh6AG456000 Rh6BG445100 Rh6CG470000
rosa_wichuraiana	Rw6G039790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	70
AccB7I	CCANNNNNTGG	2 cut(s)	425, 1154
AccII	CGCG	1 cut(s)	920
AccIII	TCCGGA	1 cut(s)	548
AciI	CCGC	4 cut(s)	744, 920, 988, 1172
AclWI	GGATC	2 cut(s)	365, 593
AcsI	RAATTY	3 cut(s)	118, 251, 439
AcuI	CTGAAG	2 cut(s)	78, 131
AdeI	CACNNNGTG	1 cut(s)	1028
AfaI	GTAC	6 cut(s)	63, 343, 407, 950, 1039, 1133
AfeI	AGCGCT	1 cut(s)	191
AfiI	CCNNNNNNNGG	5 cut(s)	239, 425, 905, 906, 1154
AflIII	ACRYGT	5 cut(s)	207, 408, 497, 799, 1069
AgsI	TTSAA	6 cut(s)	169, 256, 515, 774, 854, 1099
AhlI	ACTAGT	1 cut(s)	196
AjiI	CACGTC	1 cut(s)	838
AjnI	CCWGG	2 cut(s)	490, 1042
AjuI	GAANNNNNNNTTGG	2 cut(s)	104, 136
AluBI	AGCT	5 cut(s)	115, 365, 554, 862, 1223
AluI	AGCT	5 cut(s)	115, 365, 554, 862, 1223
Alw21I	GWGCWC	2 cut(s)	580, 811
Alw44I	GTGCAC	1 cut(s)	807
AlwI	GGATC	2 cut(s)	365, 593
Ama87I	CYCGRG	2 cut(s)	15, 100
Aor13HI	TCCGGA	1 cut(s)	548
Aor51HI	AGCGCT	1 cut(s)	191
AoxI	GGCC	1 cut(s)	878
ApaLI	GTGCAC	1 cut(s)	807
ApeKI	GCWGC	3 cut(s)	911, 923, 1220
ApoI	RAATTY	3 cut(s)	118, 251, 439
AspLEI	GCGC	2 cut(s)	192, 1005
AspS9I	GGNCC	2 cut(s)	879, 1181
AsuHPI	GGTGA	3 cut(s)	310, 806, 1058
AsuNHI	GCTAGC	2 cut(s)	460, 842
AvaI	CYCGRG	2 cut(s)	15, 100
AvaII	GGWCC	1 cut(s)	1181
AxyI	CCTNAGG	1 cut(s)	48
BaeGI	GKGCMC	1 cut(s)	811
Bbv12I	GWGCWC	2 cut(s)	580, 811
BbvI	GCAGC	3 cut(s)	910, 923, 1232
BccI	CCATC	9 cut(s)	14, 143, 255, 553, 734, 923, 935, 1148, 1156
BciT130I	CCWGG	2 cut(s)	492, 1044
BclI	TGATCA	1 cut(s)	873
BcuI	ACTAGT	1 cut(s)	196
BfaI	CTAG	4 cut(s)	197, 270, 461, 843
BfoI	RGCGCY	1 cut(s)	193
BfuAI	ACCTGC	1 cut(s)	70
BglI	GCCNNNNNGGC	1 cut(s)	920
BglII	AGATCT	1 cut(s)	529
BisI	GCNGC	5 cut(s)	745, 912, 921, 924, 1221
BlsI	GCNGC	5 cut(s)	746, 913, 922, 925, 1222
Bme1390I	CCNGG	2 cut(s)	492, 1044
Bme18I	GGWCC	1 cut(s)	1181
BmeT110I	CYCGRG	2 cut(s)	15, 100
BmgBI	CACGTC	1 cut(s)	838
BmgT120I	GGNCC	2 cut(s)	879, 1181
BmiI	GGNNCC	1 cut(s)	54
BmrFI	CCNGG	2 cut(s)	492, 1044
BmsI	GCATC	3 cut(s)	700, 1009, 1198
BmtI	GCTAGC	2 cut(s)	464, 846
BoxI	GACNNNNGTC	2 cut(s)	102, 1053
BpmI	CTGGAG	1 cut(s)	1072
BsaJI	CCNNGG	1 cut(s)	490
BsaWI	WCCGGW	2 cut(s)	239, 548
BsaXI	ACNNNNNCTCC	3 cut(s)	26, 543, 573
Bsc4I	CCNNNNNNNGG	5 cut(s)	239, 425, 905, 906, 1154
Bse1I	ACTGG	4 cut(s)	349, 510, 595, 1055
Bse21I	CCTNAGG	1 cut(s)	48
BseAI	TCCGGA	1 cut(s)	548
BseBI	CCWGG	2 cut(s)	492, 1044
BseDI	CCNNGG	1 cut(s)	490
BseGI	GGATG	5 cut(s)	154, 545, 709, 927, 1083
BseLI	CCNNNNNNNGG	5 cut(s)	239, 425, 905, 906, 1154
BseMII	CTCAG	2 cut(s)	357, 826
BseNI	ACTGG	4 cut(s)	349, 510, 595, 1055
BseSI	GKGCMC	1 cut(s)	811
BseXI	GCAGC	3 cut(s)	910, 923, 1232
BseYI	CCCAGC	1 cut(s)	414
BsgI	GTGCAG	1 cut(s)	1089
Bsh1236I	CGCG	1 cut(s)	920
BshFI	GGCC	1 cut(s)	880
BsiHKAI	GWGCWC	2 cut(s)	580, 811
BsiHKCI	CYCGRG	2 cut(s)	15, 100
BsiSI	CCGG	2 cut(s)	240, 549
BslFI	GGGAC	2 cut(s)	90, 397
BslI	CCNNNNNNNGG	5 cut(s)	239, 425, 905, 906, 1154
BsmFI	GGGAC	2 cut(s)	90, 397
BsmI	GAATGC	2 cut(s)	755, 1115
BsnI	GGCC	1 cut(s)	880
BsoBI	CYCGRG	2 cut(s)	15, 100
Bsp1286I	GDGCHC	2 cut(s)	580, 811
Bsp13I	TCCGGA	1 cut(s)	548
Bsp1407I	TGTACA	2 cut(s)	405, 948
Bsp143I	GATC	5 cut(s)	357, 529, 598, 641, 873
BspACI	CCGC	4 cut(s)	744, 920, 988, 1172
BspANI	GGCC	1 cut(s)	880
BspCNI	CTCAG	2 cut(s)	358, 825
BspEI	TCCGGA	1 cut(s)	548
BspFNI	CGCG	1 cut(s)	920
BspHI	TCATGA	1 cut(s)	1119
BspLI	GGNNCC	1 cut(s)	54
BspMI	ACCTGC	1 cut(s)	70
BspOI	GCTAGC	2 cut(s)	464, 846
BspPI	GGATC	2 cut(s)	365, 593
BsrGI	TGTACA	2 cut(s)	405, 948
BsrI	ACTGG	4 cut(s)	349, 510, 595, 1055
BssECI	CCNNGG	1 cut(s)	490
BssMI	GATC	5 cut(s)	357, 529, 598, 641, 873
Bst2UI	CCWGG	2 cut(s)	492, 1044
Bst4CI	ACNGT	5 cut(s)	325, 403, 615, 1026, 1192
Bst6I	CTCTTC	2 cut(s)	175, 1203
BstAPI	GCANNNNNTGC	3 cut(s)	822, 1112, 1217
BstAUI	TGTACA	2 cut(s)	405, 948
BstC8I	GCNNGC	4 cut(s)	462, 844, 860, 1001
BstDEI	CTNAG	4 cut(s)	48, 366, 812, 1185
BstF5I	GGATG	5 cut(s)	154, 545, 709, 927, 1083
BstFNI	CGCG	1 cut(s)	920
BstH2I	RGCGCY	1 cut(s)	193
BstHHI	GCGC	2 cut(s)	192, 1005
BstKTI	GATC	5 cut(s)	360, 532, 601, 644, 876
BstMBI	GATC	5 cut(s)	357, 529, 598, 641, 873
BstMWI	GCNNNNNNNGC	9 cut(s)	461, 750, 822, 839, 917, 920, 996, 1112, 1217
BstNI	CCWGG	2 cut(s)	492, 1044
BstNSI	RCATGY	8 cut(s)	211, 412, 501, 523, 1003, 1073, 1147, 1220
BstPAI	GACNNNNGTC	2 cut(s)	102, 1053
BstSCI	CCNGG	2 cut(s)	490, 1042
BstSLI	GKGCMC	1 cut(s)	811
BstUI	CGCG	1 cut(s)	920
BstV1I	GCAGC	3 cut(s)	910, 923, 1232
BstX2I	RGATCY	1 cut(s)	529
BstXI	CCANNNNNNTGG	1 cut(s)	1072
BstYI	RGATCY	1 cut(s)	529
Bsu36I	CCTNAGG	1 cut(s)	48
BsuRI	GGCC	1 cut(s)	880
BtgZI	GCGATG	1 cut(s)	901
BtrI	CACGTC	1 cut(s)	838
BtsCI	GGATG	5 cut(s)	154, 545, 709, 927, 1083
BtsIMutI	CAGTG	5 cut(s)	321, 408, 620, 697, 1022
BveI	ACCTGC	1 cut(s)	70
Cac8I	GCNNGC	4 cut(s)	462, 844, 860, 1001
CciI	TCATGA	1 cut(s)	1119
CfoI	GCGC	2 cut(s)	192, 1005
Cfr13I	GGNCC	2 cut(s)	879, 1181
Csp6I	GTAC	6 cut(s)	62, 342, 406, 949, 1038, 1132
CviQI	GTAC	6 cut(s)	62, 342, 406, 949, 1038, 1132
DdeI	CTNAG	4 cut(s)	48, 366, 812, 1185
DpnI	GATC	5 cut(s)	359, 531, 600, 643, 875
DpnII	GATC	5 cut(s)	357, 529, 598, 641, 873
DraIII	CACNNNGTG	1 cut(s)	1028
Eam1104I	CTCTTC	2 cut(s)	175, 1203
EarI	CTCTTC	2 cut(s)	175, 1203
Eco47I	GGWCC	1 cut(s)	1181
Eco47III	AGCGCT	1 cut(s)	191
Eco57I	CTGAAG	2 cut(s)	78, 131
Eco81I	CCTNAGG	1 cut(s)	48
Eco88I	CYCGRG	2 cut(s)	15, 100
EcoRI	GAATTC	1 cut(s)	251
EcoRII	CCWGG	2 cut(s)	490, 1042
FalI	AAGNNNNNCTT	2 cut(s)	51, 83
FaqI	GGGAC	2 cut(s)	90, 397
FauI	CCCGC	1 cut(s)	1165
FauNDI	CATATG	1 cut(s)	424
FbaI	TGATCA	1 cut(s)	873
Fnu4HI	GCNGC	5 cut(s)	745, 912, 921, 924, 1221
FokI	GGATG	5 cut(s)	161, 532, 716, 914, 1090
Fsp4HI	GCNGC	5 cut(s)	745, 912, 921, 924, 1221
FspBI	CTAG	4 cut(s)	197, 270, 461, 843
GlaI	GCGC	2 cut(s)	191, 1004
GluI	GCNGC	5 cut(s)	745, 912, 921, 924, 1221
GsaI	CCCAGC	1 cut(s)	418
GsuI	CTGGAG	1 cut(s)	1072
HaeII	RGCGCY	1 cut(s)	193
HaeIII	GGCC	1 cut(s)	880
HapII	CCGG	2 cut(s)	240, 549
HhaI	GCGC	2 cut(s)	192, 1005
Hin6I	GCGC	2 cut(s)	190, 1003
HinP1I	GCGC	2 cut(s)	190, 1003
HinfI	GANTC	7 cut(s)	11, 103, 243, 273, 315, 668, 1054
HpaII	CCGG	2 cut(s)	240, 549
HphI	GGTGA	3 cut(s)	310, 806, 1058
Hpy166II	GTNNAC	5 cut(s)	406, 503, 797, 809, 1083
Hpy188I	TCNGA	2 cut(s)	362, 1153
Hpy188III	TCNNGA	6 cut(s)	15, 56, 549, 701, 1092, 1120
Hpy8I	GTNNAC	5 cut(s)	406, 503, 797, 809, 1083
HpyAV	CCTTC	1 cut(s)	967
HpyCH4III	ACNGT	5 cut(s)	325, 403, 615, 1026, 1192
HpyCH4IV	ACGT	2 cut(s)	799, 837
HpyCH4V	TGCA	8 cut(s)	79, 809, 825, 1022, 1106, 1115, 1211, 1220
HpyF10VI	GCNNNNNNNGC	9 cut(s)	461, 750, 822, 839, 917, 920, 996, 1112, 1217
HpyF3I	CTNAG	4 cut(s)	48, 366, 812, 1185
HpySE526I	ACGT	2 cut(s)	799, 837
HspAI	GCGC	2 cut(s)	190, 1003
Kpn2I	TCCGGA	1 cut(s)	548
Ksp22I	TGATCA	1 cut(s)	873
Kzo9I	GATC	5 cut(s)	357, 529, 598, 641, 873
LmnI	GCTCC	4 cut(s)	187, 362, 551, 619
Lsp1109I	GCAGC	3 cut(s)	910, 923, 1232
LweI	GCATC	3 cut(s)	700, 1009, 1198
MaeI	CTAG	4 cut(s)	197, 270, 461, 843
MaeII	ACGT	2 cut(s)	799, 837
MaeIII	GTNAC	6 cut(s)	316, 479, 654, 1046, 1055, 1225
MalI	GATC	5 cut(s)	359, 531, 600, 643, 875
MboI	GATC	5 cut(s)	357, 529, 598, 641, 873
MboII	GAAGA	4 cut(s)	192, 221, 539, 1190
MfeI	CAATTG	1 cut(s)	632
MflI	RGATCY	1 cut(s)	529
MhlI	GDGCHC	2 cut(s)	580, 811
MluCI	AATT	6 cut(s)	118, 214, 251, 439, 632, 1243
MlyI	GAGTC	5 cut(s)	20, 112, 267, 324, 1063
MmeI	TCCRAC	2 cut(s)	504, 626
MnlI	CCTC	4 cut(s)	139, 348, 1152, 1206
MroI	TCCGGA	1 cut(s)	548
MseI	TTAA	4 cut(s)	201, 219, 303, 1164
MspA1I	CMGCKG	2 cut(s)	862, 1223
MspI	CCGG	2 cut(s)	240, 549
MspR9I	CCNGG	2 cut(s)	492, 1044
MunI	CAATTG	1 cut(s)	632
Mva1269I	GAATGC	2 cut(s)	755, 1115
MvaI	CCWGG	2 cut(s)	492, 1044
MvnI	CGCG	1 cut(s)	920
MwoI	GCNNNNNNNGC	9 cut(s)	461, 750, 822, 839, 917, 920, 996, 1112, 1217
NdeI	CATATG	1 cut(s)	424
NdeII	GATC	5 cut(s)	357, 529, 598, 641, 873
NheI	GCTAGC	2 cut(s)	460, 842
NlaIV	GGNNCC	1 cut(s)	54
NmuCI	GTSAC	3 cut(s)	316, 1046, 1055
NspI	RCATGY	8 cut(s)	211, 412, 501, 523, 1003, 1073, 1147, 1220
PaeI	GCATGC	1 cut(s)	1003
PagI	TCATGA	1 cut(s)	1119
PciI	ACATGT	4 cut(s)	207, 408, 497, 1069
PctI	GAATGC	2 cut(s)	755, 1115
PfeI	GAWTC	2 cut(s)	243, 668
PflMI	CCANNNNNTGG	2 cut(s)	425, 1154
PkrI	GCNGC	5 cut(s)	746, 913, 922, 925, 1222
PleI	GAGTC	5 cut(s)	19, 111, 267, 323, 1062
PpsI	GAGTC	5 cut(s)	19, 111, 267, 323, 1062
PscI	ACATGT	4 cut(s)	207, 408, 497, 1069
PshAI	GACNNNNGTC	2 cut(s)	102, 1053
Psp6I	CCWGG	2 cut(s)	490, 1042
PspFI	CCCAGC	1 cut(s)	414
PspGI	CCWGG	2 cut(s)	490, 1042
PspN4I	GGNNCC	1 cut(s)	54
PspPI	GGNCC	2 cut(s)	879, 1181
PsuI	RGATCY	1 cut(s)	529
PvuII	CAGCTG	2 cut(s)	862, 1223
RsaI	GTAC	6 cut(s)	63, 343, 407, 950, 1039, 1133
RsaNI	GTAC	6 cut(s)	62, 342, 406, 949, 1038, 1132
SaqAI	TTAA	4 cut(s)	201, 219, 303, 1164
SatI	GCNGC	5 cut(s)	745, 912, 921, 924, 1221
Sau3AI	GATC	5 cut(s)	357, 529, 598, 641, 873
Sau96I	GGNCC	2 cut(s)	879, 1181
SchI	GAGTC	5 cut(s)	20, 112, 267, 324, 1063
ScrFI	CCNGG	2 cut(s)	492, 1044
SduI	GDGCHC	2 cut(s)	580, 811
SfaNI	GCATC	3 cut(s)	700, 1009, 1198
SinI	GGWCC	1 cut(s)	1181
SpeI	ACTAGT	1 cut(s)	196
SphI	GCATGC	1 cut(s)	1003
Sse9I	AATT	6 cut(s)	118, 214, 251, 439, 632, 1243
SsiI	CCGC	4 cut(s)	744, 920, 988, 1172
SspI	AATATT	1 cut(s)	383
SspMI	CTAG	4 cut(s)	197, 270, 461, 843
StyD4I	CCNGG	2 cut(s)	490, 1042
TaaI	ACNGT	5 cut(s)	325, 403, 615, 1026, 1192
TaiI	ACGT	2 cut(s)	802, 840
TaqI	TCGA	1 cut(s)	1017
TasI	AATT	6 cut(s)	118, 214, 251, 439, 632, 1243
TatI	WGTACW	2 cut(s)	405, 948
TauI	GCSGC	2 cut(s)	747, 923
TfiI	GAWTC	2 cut(s)	243, 668
Tru1I	TTAA	4 cut(s)	201, 219, 303, 1164
Tru9I	TTAA	4 cut(s)	201, 219, 303, 1164
TscAI	CASTG	5 cut(s)	328, 408, 620, 697, 1029
TseFI	GTSAC	3 cut(s)	316, 1046, 1055
TseI	GCWGC	3 cut(s)	911, 923, 1220
Tsp45I	GTSAC	3 cut(s)	316, 1046, 1055
TspDTI	ATGAA	3 cut(s)	893, 995, 1108
TspRI	CASTG	5 cut(s)	328, 408, 620, 697, 1029
Van91I	CCANNNNNTGG	2 cut(s)	425, 1154
VneI	GTGCAC	1 cut(s)	807
VpaK11BI	GGWCC	1 cut(s)	1181
XapI	RAATTY	3 cut(s)	118, 251, 439
XceI	RCATGY	8 cut(s)	211, 412, 501, 523, 1003, 1073, 1147, 1220
XcmI	CCANNNNNNNNNTGG	2 cut(s)	335, 422
XspI	CTAG	4 cut(s)	197, 270, 461, 843

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.