Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0011825

Physical Location & Seq

Genomic Coordinates Forward (+)

4809610 .. 4812979

Gene Structure 3370 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010854

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGGAGCCACAAGAAGGCGGTTCTGTATTCGCACACATTCCTCACGTTCCTGAAGTCCCAATTTACGCGATGATGGTTGCTTTCAGCAGAGACCCAAGTCCACTGAAGCTCAATTTAGGGATTGGTGTCTATAGAACTGAGGATGGGAAACCTTTTCAATTGAATGTAGTTAGACGAGTGGAGCGGTTACTAGTTAATGACAGGTCCACTTTTAAGGAGTATCTTCCTATTACTGGGACTGCTGAGTTCAACAGATTGAGTGCTAAGCTCATTTTGGGTGCTGACAGCCCTGCTATCAAGGAGAATAGAGTCACTACTGTCCAGTGCTTATCTGGTAGTGGATCACTGAGGGTCGGAGCCGAGTTTCTAGCAAACCATTACCACCATCATACGGTCTACATGTCCCAGCCAACATATGCAGCCCACCCAGCTTTTTTCTCTGCAGCAGGGCTAGCTATCAAGACTTACCGTTACTATGACCCCGGAACATGTGGACTGGACTTCCAAGGAATGTTAGAAGATCTTTTGTCTGCCCCATCAGGAGCTATTGTGCTTCTCCAAGCATGTGCACATAACCCCACAGGTGTTGATCCAACTCTTCCACAGTGGGAGCAGATAAGACAGTTGATTAGAGCAAAGGGATTGTTTCCTTTCTTTGACTCTGCTTATCAGGGTCTTGTCAGTGGAAATCTGGATGAGGATGCACAATTTATTCGTCTGTTTGTTGCTGATGGTGGTGAGTGCCTTATAGCTCAGTCATATTCGAAGATTATGGGACTTTATGGAGAACGTGTTGGTGCCCTCAGCATTGTTTGCAAGACAGCAGAAGTGGCTAGCCATGTTGAAAGCCAGCTGAAACTTGTGATCAGGCCCATGTATTCTAGCCCCCCAATTCATGGGGCATCCATAGTGGCCACCATCTTAAAGGATAGGGATATGTATGAGGAATGGGGTGTTGAAGTGAAGGCAATGACTGACCGCCTTATTAGCACGCGTAGACAACTATTTGATGCTCTGCGTGATAGAGATACTCCTGGTGACTGGGCGCACATTATCAGGCATGTTGGATTGTTTACTTTCTCAGGACTGAACCCTGAACAAGTTGCTTTCATGAATAAAGAGTACCATATCTACATGCCATCCGATGGGAGGATCAACATGGCAGCTCTAGGTCCTAAGACGGTTCCTCGTCTTGCAGATGCAATACATGCAGCTGTTAACATTGGTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00270 ko00330 ko00350 ko00360 ko00400 ko00710 ko00950 ko00960 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00220 map00250 map00270 map00330 map00350 map00360 map00400 map00710 map00950 map00960 map01100 map01110 map01120 map01130 map01200 map01210 map01230

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

411

Amino Acids

45.24

Weight (kDa)

6.4

Isoelectric Point (pI)

45.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_1_2	PF00155	36 - 402	7.5e-87	Aminotransferase class I and II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62800 AT1G62800 AT1G62800 AT5G19550
fragaria_vesca	FvH4_2g36020
malus_domestica	MD08G1117300.v1.1
prunus_persica	Prupe.1G451800_v2.0.a1 Prupe.1G451800_v2.0.a1
pyrus_communis	pycom08g09790
rosa_chinensis	RchiOBHm_Chr6g0305831
rosa_laevigata	RLG00000010854
rosa_roxburghii	Rroxscaffold_7G00162290
rosa_rugosa	Rorug06G0344000 Rorug06G0344100.1 Rorug06G0344200
rosa_samantha	Rh6AG456000 Rh6BG445100 Rh6CG470000
rosa_wichuraiana	Rw6G039790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	797
AccB7I	CCANNNNNTGG	2 cut(s)	896, 1145
AccBSI	CCGCTC	1 cut(s)	184
AccI	GTMKAC	2 cut(s)	396, 997
AccII	CGCG	2 cut(s)	68, 994
AciI	CCGC	3 cut(s)	18, 184, 979
AclWI	GGATC	3 cut(s)	349, 584, 1160
AcoI	YGGCCR	1 cut(s)	912
AcuI	CTGAAG	2 cut(s)	72, 125
AfaI	GTAC	1 cut(s)	1124
AfiI	CCNNNNNNNGG	6 cut(s)	14, 233, 391, 896, 1145, 1149
AflIII	ACRYGT	4 cut(s)	399, 488, 790, 992
AgsI	TTSAA	5 cut(s)	158, 163, 250, 845, 959
AhlI	ACTAGT	1 cut(s)	190
AjnI	CCWGG	1 cut(s)	1033
AluBI	AGCT	9 cut(s)	109, 268, 431, 455, 545, 752, 853, 1166, 1214
AluI	AGCT	9 cut(s)	109, 268, 431, 455, 545, 752, 853, 1166, 1214
Alw21I	GWGCWC	1 cut(s)	571
Alw26I	GTCTC	1 cut(s)	84
Alw44I	GTGCAC	1 cut(s)	567
AlwI	GGATC	3 cut(s)	349, 584, 1160
AoxI	GGCC	2 cut(s)	869, 912
ApaLI	GTGCAC	1 cut(s)	567
ApeKI	GCWGC	4 cut(s)	419, 443, 1163, 1211
AspLEI	GCGC	1 cut(s)	1048
AspS9I	GGNCC	3 cut(s)	204, 870, 1172
AsuC2I	CCSGG	1 cut(s)	483
AsuHPI	GGTGA	2 cut(s)	749, 1049
AsuII	TTCGAA	1 cut(s)	764
AsuNHI	GCTAGC	2 cut(s)	451, 833
AvaII	GGWCC	2 cut(s)	204, 1172
BaeGI	GKGCMC	2 cut(s)	571, 802
BalI	TGGCCA	1 cut(s)	914
BanI	GGYRCC	1 cut(s)	797
Bbv12I	GWGCWC	1 cut(s)	571
BbvCI	CCTCAGC	1 cut(s)	803
BbvI	GCAGC	4 cut(s)	431, 455, 1175, 1223
BccI	CCATC	8 cut(s)	67, 137, 393, 544, 725, 926, 1139, 1147
BciT130I	CCWGG	1 cut(s)	1035
BclI	TGATCA	1 cut(s)	864
BcnI	CCSGG	1 cut(s)	483
BcoDI	GTCTC	1 cut(s)	84
BcuI	ACTAGT	1 cut(s)	190
BfaI	CTAG	6 cut(s)	191, 368, 452, 834, 882, 1169
BfmI	CTRYAG	2 cut(s)	130, 441
BglII	AGATCT	1 cut(s)	520
BisI	GCNGC	4 cut(s)	420, 444, 1164, 1212
BlpI	GCTNAGC	1 cut(s)	264
BlsI	GCNGC	4 cut(s)	421, 445, 1165, 1213
Bme1390I	CCNGG	2 cut(s)	483, 1035
Bme18I	GGWCC	2 cut(s)	204, 1172
BmgT120I	GGNCC	3 cut(s)	204, 870, 1172
BmiI	GGNNCC	4 cut(s)	6, 358, 799, 1185
BmrFI	CCNGG	2 cut(s)	483, 1035
BmrI	ACTGGG	2 cut(s)	243, 1051
BmsI	GCATC	4 cut(s)	691, 911, 1000, 1189
BmtI	GCTAGC	2 cut(s)	455, 837
BmuI	ACTGGG	2 cut(s)	243, 1051
BoxI	GACNNNNGTC	1 cut(s)	96
Bpu10I	CCTNAGC	1 cut(s)	803
Bpu1102I	GCTNAGC	1 cut(s)	264
Bpu14I	TTCGAA	1 cut(s)	764
BpuMI	CCSGG	1 cut(s)	483
BsaI	GGTCTC	1 cut(s)	84
BsaJI	CCNNGG	2 cut(s)	481, 505
BsaXI	ACNNNNNCTCC	4 cut(s)	534, 564, 777, 807
Bsc4I	CCNNNNNNNGG	6 cut(s)	14, 233, 391, 896, 1145, 1149
Bse1I	ACTGG	4 cut(s)	238, 322, 501, 1046
Bse3DI	GCAATG	1 cut(s)	975
BseBI	CCWGG	1 cut(s)	1035
BseDI	CCNNGG	2 cut(s)	481, 505
BseGI	GGATG	5 cut(s)	148, 700, 706, 902, 1139
BseLI	CCNNNNNNNGG	6 cut(s)	14, 233, 391, 896, 1145, 1149
BseMI	GCAATG	1 cut(s)	975
BseMII	CTCAG	6 cut(s)	129, 234, 338, 767, 817, 1095
BseNI	ACTGG	4 cut(s)	238, 322, 501, 1046
BseSI	GKGCMC	2 cut(s)	571, 802
BseXI	GCAGC	4 cut(s)	431, 455, 1175, 1223
BseYI	CCCAGC	2 cut(s)	405, 427
Bsh1236I	CGCG	2 cut(s)	68, 994
BshFI	GGCC	2 cut(s)	871, 914
BshNI	GGYRCC	1 cut(s)	797
BsiHKAI	GWGCWC	1 cut(s)	571
BsiSI	CCGG	1 cut(s)	483
BslFI	GGGAC	4 cut(s)	41, 250, 388, 789
BslI	CCNNNNNNNGG	6 cut(s)	14, 233, 391, 896, 1145, 1149
BsmAI	GTCTC	1 cut(s)	84
BsmFI	GGGAC	4 cut(s)	41, 250, 388, 789
BsnI	GGCC	2 cut(s)	871, 914
Bso31I	GGTCTC	1 cut(s)	84
Bsp119I	TTCGAA	1 cut(s)	764
Bsp1286I	GDGCHC	2 cut(s)	571, 802
Bsp143I	GATC	5 cut(s)	341, 520, 589, 864, 1152
Bsp1720I	GCTNAGC	1 cut(s)	264
BspACI	CCGC	3 cut(s)	18, 184, 979
BspANI	GGCC	2 cut(s)	871, 914
BspCNI	CTCAG	6 cut(s)	130, 235, 339, 766, 816, 1094
BspFNI	CGCG	2 cut(s)	68, 994
BspHI	TCATGA	1 cut(s)	1110
BspLI	GGNNCC	4 cut(s)	6, 358, 799, 1185
BspMAI	CTGCAG	1 cut(s)	445
BspOI	GCTAGC	2 cut(s)	455, 837
BspPI	GGATC	3 cut(s)	349, 584, 1160
BspT104I	TTCGAA	1 cut(s)	764
BspT107I	GGYRCC	1 cut(s)	797
BspTNI	GGTCTC	1 cut(s)	84
BsrBI	CCGCTC	1 cut(s)	184
BsrDI	GCAATG	1 cut(s)	975
BsrI	ACTGG	4 cut(s)	238, 322, 501, 1046
BssECI	CCNNGG	2 cut(s)	481, 505
BssMI	GATC	5 cut(s)	341, 520, 589, 864, 1152
BssT1I	CCWWGG	1 cut(s)	505
Bst2UI	CCWGG	1 cut(s)	1035
Bst4CI	ACNGT	6 cut(s)	319, 394, 470, 606, 624, 1183
Bst6I	CTCTTC	1 cut(s)	603
BstAPI	GCANNNNNTGC	2 cut(s)	813, 1208
BstBI	TTCGAA	1 cut(s)	764
BstC8I	GCNNGC	4 cut(s)	453, 835, 851, 992
BstDEI	CTNAG	8 cut(s)	138, 243, 264, 347, 753, 803, 1081, 1176
BstF5I	GGATG	5 cut(s)	148, 700, 706, 902, 1139
BstFNI	CGCG	2 cut(s)	68, 994
BstHHI	GCGC	1 cut(s)	1048
BstKTI	GATC	5 cut(s)	344, 523, 592, 867, 1155
BstMAI	GTCTC	1 cut(s)	84
BstMBI	GATC	5 cut(s)	341, 520, 589, 864, 1152
BstMWI	GCNNNNNNNGC	6 cut(s)	428, 452, 813, 830, 987, 1208
BstNI	CCWGG	1 cut(s)	1035
BstNSI	RCATGY	6 cut(s)	403, 492, 567, 1064, 1138, 1211
BstPAI	GACNNNNGTC	1 cut(s)	96
BstSCI	CCNGG	2 cut(s)	481, 1033
BstSFI	CTRYAG	2 cut(s)	130, 441
BstSLI	GKGCMC	2 cut(s)	571, 802
BstUI	CGCG	2 cut(s)	68, 994
BstV1I	GCAGC	4 cut(s)	431, 455, 1175, 1223
BstX2I	RGATCY	1 cut(s)	520
BstYI	RGATCY	1 cut(s)	520
BsuRI	GGCC	2 cut(s)	871, 914
BtgZI	GCGATG	1 cut(s)	83
BtsCI	GGATG	5 cut(s)	148, 700, 706, 902, 1139
BtsIMutI	CAGTG	5 cut(s)	101, 329, 344, 611, 688
Cac8I	GCNNGC	4 cut(s)	453, 835, 851, 992
CciI	TCATGA	1 cut(s)	1110
CfoI	GCGC	1 cut(s)	1048
Cfr13I	GGNCC	3 cut(s)	204, 870, 1172
Csp6I	GTAC	1 cut(s)	1123
CspCI	CAANNNNNGTGG	2 cut(s)	568, 603
CviQI	GTAC	1 cut(s)	1123
DdeI	CTNAG	8 cut(s)	138, 243, 264, 347, 753, 803, 1081, 1176
DpnI	GATC	5 cut(s)	343, 522, 591, 866, 1154
DpnII	GATC	5 cut(s)	341, 520, 589, 864, 1152
EaeI	YGGCCR	1 cut(s)	912
Eam1104I	CTCTTC	1 cut(s)	603
EarI	CTCTTC	1 cut(s)	603
Eco130I	CCWWGG	1 cut(s)	505
Eco31I	GGTCTC	1 cut(s)	84
Eco47I	GGWCC	2 cut(s)	204, 1172
Eco57I	CTGAAG	2 cut(s)	72, 125
EcoO109I	RGGNCCY	1 cut(s)	1172
EcoRII	CCWGG	1 cut(s)	1033
EcoT14I	CCWWGG	1 cut(s)	505
ErhI	CCWWGG	1 cut(s)	505
FaqI	GGGAC	4 cut(s)	41, 250, 388, 789
FauNDI	CATATG	1 cut(s)	415
FbaI	TGATCA	1 cut(s)	864
FblI	GTMKAC	2 cut(s)	396, 997
Fnu4HI	GCNGC	4 cut(s)	420, 444, 1164, 1212
FokI	GGATG	5 cut(s)	155, 707, 713, 889, 1126
Fsp4HI	GCNGC	4 cut(s)	420, 444, 1164, 1212
FspBI	CTAG	6 cut(s)	191, 368, 452, 834, 882, 1169
GlaI	GCGC	1 cut(s)	1047
GluI	GCNGC	4 cut(s)	420, 444, 1164, 1212
GsaI	CCCAGC	2 cut(s)	409, 431
HaeIII	GGCC	2 cut(s)	871, 914
HapII	CCGG	1 cut(s)	483
HhaI	GCGC	1 cut(s)	1048
Hin6I	GCGC	1 cut(s)	1046
HinP1I	GCGC	1 cut(s)	1046
HincII	GTYRAC	1 cut(s)	1219
HindII	GTYRAC	1 cut(s)	1219
HinfI	GANTC	2 cut(s)	309, 659
HpaI	GTTAAC	1 cut(s)	1219
HpaII	CCGG	1 cut(s)	483
HphI	GGTGA	2 cut(s)	749, 1049
Hpy166II	GTNNAC	8 cut(s)	101, 207, 397, 494, 569, 998, 1074, 1219
Hpy188I	TCNGA	2 cut(s)	356, 1144
Hpy188III	TCNNGA	6 cut(s)	50, 460, 540, 692, 1083, 1111
Hpy8I	GTNNAC	8 cut(s)	101, 207, 397, 494, 569, 998, 1074, 1219
HpyAV	CCTTC	2 cut(s)	8, 958
HpyCH4III	ACNGT	6 cut(s)	319, 394, 470, 606, 624, 1183
HpyCH4IV	ACGT	2 cut(s)	45, 790
HpyCH4V	TGCA	8 cut(s)	419, 443, 569, 704, 816, 1196, 1202, 1211
HpyF10VI	GCNNNNNNNGC	6 cut(s)	428, 452, 813, 830, 987, 1208
HpyF3I	CTNAG	8 cut(s)	138, 243, 264, 347, 753, 803, 1081, 1176
HpySE526I	ACGT	2 cut(s)	45, 790
HspAI	GCGC	1 cut(s)	1046
Ksp22I	TGATCA	1 cut(s)	864
KspAI	GTTAAC	1 cut(s)	1219
Kzo9I	GATC	5 cut(s)	341, 520, 589, 864, 1152
LmnI	GCTCC	5 cut(s)	4, 181, 356, 542, 610
Lsp1109I	GCAGC	4 cut(s)	431, 455, 1175, 1223
LweI	GCATC	4 cut(s)	691, 911, 1000, 1189
MaeI	CTAG	6 cut(s)	191, 368, 452, 834, 882, 1169
MaeII	ACGT	2 cut(s)	45, 790
MaeIII	GTNAC	4 cut(s)	186, 310, 470, 1037
MalI	GATC	5 cut(s)	343, 522, 591, 866, 1154
MbiI	CCGCTC	1 cut(s)	184
MboI	GATC	5 cut(s)	341, 520, 589, 864, 1152
MboII	GAAGA	4 cut(s)	215, 530, 590, 778
MfeI	CAATTG	1 cut(s)	158
MflI	RGATCY	1 cut(s)	520
MhlI	GDGCHC	2 cut(s)	571, 802
MlsI	TGGCCA	1 cut(s)	914
MluCI	AATT	5 cut(s)	60, 112, 158, 707, 891
MluI	ACGCGT	1 cut(s)	992
MluNI	TGGCCA	1 cut(s)	914
MlyI	GAGTC	2 cut(s)	318, 653
MmeI	TCCRAC	3 cut(s)	334, 617, 1045
MnlI	CCTC	8 cut(s)	51, 133, 342, 691, 812, 937, 1143, 1197
Mox20I	TGGCCA	1 cut(s)	914
MscI	TGGCCA	1 cut(s)	914
MseI	TTAA	4 cut(s)	195, 213, 923, 1218
Msp20I	TGGCCA	1 cut(s)	914
MspA1I	CMGCKG	2 cut(s)	853, 1214
MspI	CCGG	1 cut(s)	483
MspR9I	CCNGG	2 cut(s)	483, 1035
MunI	CAATTG	1 cut(s)	158
MvaI	CCWGG	1 cut(s)	1035
MvnI	CGCG	2 cut(s)	68, 994
MwoI	GCNNNNNNNGC	6 cut(s)	428, 452, 813, 830, 987, 1208
NciI	CCSGG	1 cut(s)	483
NdeI	CATATG	1 cut(s)	415
NdeII	GATC	5 cut(s)	341, 520, 589, 864, 1152
NheI	GCTAGC	2 cut(s)	451, 833
NlaIV	GGNNCC	4 cut(s)	6, 358, 799, 1185
NmeAIII	GCCGAG	1 cut(s)	385
NmuCI	GTSAC	2 cut(s)	310, 1037
NspI	RCATGY	6 cut(s)	403, 492, 567, 1064, 1138, 1211
NspV	TTCGAA	1 cut(s)	764
PagI	TCATGA	1 cut(s)	1110
PciI	ACATGT	2 cut(s)	399, 488
PflMI	CCANNNNNTGG	2 cut(s)	896, 1145
PkrI	GCNGC	4 cut(s)	421, 445, 1165, 1213
PleI	GAGTC	2 cut(s)	317, 653
PpsI	GAGTC	2 cut(s)	317, 653
PpuMI	RGGWCCY	1 cut(s)	1172
PscI	ACATGT	2 cut(s)	399, 488
PshAI	GACNNNNGTC	1 cut(s)	96
Psp5II	RGGWCCY	1 cut(s)	1172
Psp6I	CCWGG	1 cut(s)	1033
PspFI	CCCAGC	2 cut(s)	405, 427
PspGI	CCWGG	1 cut(s)	1033
PspN4I	GGNNCC	4 cut(s)	6, 358, 799, 1185
PspPI	GGNCC	3 cut(s)	204, 870, 1172
PspPPI	RGGWCCY	1 cut(s)	1172
PstI	CTGCAG	1 cut(s)	445
PsuI	RGATCY	1 cut(s)	520
PvuII	CAGCTG	2 cut(s)	853, 1214
RsaI	GTAC	1 cut(s)	1124
RsaNI	GTAC	1 cut(s)	1123
SaqAI	TTAA	4 cut(s)	195, 213, 923, 1218
SatI	GCNGC	4 cut(s)	420, 444, 1164, 1212
Sau3AI	GATC	5 cut(s)	341, 520, 589, 864, 1152
Sau96I	GGNCC	3 cut(s)	204, 870, 1172
SchI	GAGTC	2 cut(s)	318, 653
ScrFI	CCNGG	2 cut(s)	483, 1035
SduI	GDGCHC	2 cut(s)	571, 802
SfaNI	GCATC	4 cut(s)	691, 911, 1000, 1189
SfcI	CTRYAG	2 cut(s)	130, 441
SfuI	TTCGAA	1 cut(s)	764
SinI	GGWCC	2 cut(s)	204, 1172
SpeI	ACTAGT	1 cut(s)	190
Sse9I	AATT	5 cut(s)	60, 112, 158, 707, 891
SsiI	CCGC	3 cut(s)	18, 184, 979
SspMI	CTAG	6 cut(s)	191, 368, 452, 834, 882, 1169
StyD4I	CCNGG	2 cut(s)	481, 1033
StyI	CCWWGG	1 cut(s)	505
TaaI	ACNGT	6 cut(s)	319, 394, 470, 606, 624, 1183
TaiI	ACGT	2 cut(s)	48, 793
TaqI	TCGA	1 cut(s)	764
TasI	AATT	5 cut(s)	60, 112, 158, 707, 891
Tru1I	TTAA	4 cut(s)	195, 213, 923, 1218
Tru9I	TTAA	4 cut(s)	195, 213, 923, 1218
TscAI	CASTG	5 cut(s)	108, 329, 351, 611, 688
TseFI	GTSAC	2 cut(s)	310, 1037
TseI	GCWGC	4 cut(s)	419, 443, 1163, 1211
Tsp45I	GTSAC	2 cut(s)	310, 1037
TspDTI	ATGAA	3 cut(s)	884, 1099, 1127
TspRI	CASTG	5 cut(s)	108, 329, 351, 611, 688
Van91I	CCANNNNNTGG	2 cut(s)	896, 1145
VneI	GTGCAC	1 cut(s)	567
VpaK11BI	GGWCC	2 cut(s)	204, 1172
XceI	RCATGY	6 cut(s)	403, 492, 567, 1064, 1138, 1211
XcmI	CCANNNNNNNNNTGG	1 cut(s)	329
XmiI	GTMKAC	2 cut(s)	396, 997
XspI	CTAG	6 cut(s)	191, 368, 452, 834, 882, 1169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.