AT5G19560

Nucleotide exchange factor

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
6602910 .. 6606506
3597 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G19560.4

Sequence Viewer

Length: 1482 bp
ATGTTCGATGGTCGGAACTCTGGACATTCATCTTTCTCTTCTCGTGGGGATGGCATGCATACACCCGAGCACGAACTCGCCGGACATGCTGCACCATCCACTCGTAGAGGCAAGCAAAATAGGAGATCAGACATGGAAGTGATGAAGGAAAGATTCGCAAAACTGCTTCTTGGAGAGGACATGTCAGGCGGTGGGACAGGGGAGACCTCTGCGTTAGCTTTGTCAAACGCCATCACCAAACTCGCTGATTCGATGTTTGGAGAGCAGATGAAATTGCAGCCTATGTATCCGGAGACAAAAGAGAATTGGAGGAAAGAAATGGGTTGGTTATTATCTGTGATTGATCACATTGTCCAGTTTGTTCCTTCTAGACAAATGGGTAAAAATGGCCAATTCACTGAGATCATGGTTACAAAACAAAGAGATGATTTGCTGACGAACATTCCAGCTTTACGCAAACTTGACTCGGTTCTTCTCGAAACTTTGGACAACTTCAAGGATCAGAAAGACTTTTGGTATGTGCCAAGAGATATGGAGGATGCAGATCACAATGGAGATTGGAGGAGGGATGAGAACTGGTGGTTACCAGTTGTTAAGGTTCCAACAGATGGCTTGTCTGAGGAATCACGTAGATGGTTGCAGAATCAGAAAGATTCTGTGGCTCAAGTCCTTAAAGCCGCCACGGCCATCAATGCTCATGTATTGTCTGAAATGCACGTTCCTGAAAACTACATTGATTCCCTTCCAAAGAATGGGAAGACAAGCTTGGGAGATTTTCTTTACAAGAGCATAACAGAGGAGAGCTTTGATCCTGACTACTTTGTCTCTTTCTTGGATTTGTCAACGGAACACAAAGTACTTGATCTAAAGAACAGGATTGAAGCTTCCATGGTGATCTGGAAGAGGAAGATGTGCCAGAAAGAGAAAGACGGGAAATCTCAGTGGGGATCCACTGTTAGCTTAGAGAAGAGGGAGCTTTTCGAAGTCCGAGCTGAGACCATTTTGGTTATGCTCAAACAACAATTTCCTGGGATCCCACAATCCTCCCTTGAAGTCTCCAAGATTAAAAACAACAAGGATGTTGGACAGGCGATTTTGGAGAGCTATTCAAGGGTACTAGAGAGTCTTGCTTCAAAGATAATGTCAAGAATAGAGGATGTTCTTGAAGCCGATCGGCTAGTTCAAAGACAGTTGATGGGAGAGGCAGAGACAAGATCAGAAAGCGAGGCAGAATCAGAATACGAGGAAACTGAAAAGGTGGTTGCAGCGGAAACACCAAACTCGAGGAAACTATCAGACTTCATAGGGTGGAGATTGTCATCTGATACTAAGAAGCATAGTTCAATGAGTGATATAGAATTCTTCCACAAAGTTGAGCAGGAGAAGGAGAAGCCCATGATGAAGTCTCCAAGAGCTCTACCGAAGAAATTTTCATATCTAGCAAAGTTAGAGAACATGAGAAGCCCTAGTGACAGACACTGA

Protein Analysis

493

Amino Acids

56.52

Weight (kDa)

5.95

Isoelectric Point (pI)

54.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRONE PF03759 62 - 414 6.1e-163 PRONE (Plant-specific Rop nucleotide exchanger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0010910)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 821
AccB7I CCANNNNNTGG 2 cut(s) 608, 752
AccIII TCCGGA 1 cut(s) 289
AciI CCGC 3 cut(s) 189, 678, 1268
AclWI GGATC 6 cut(s) 507, 803, 942, 955, 1027, 1040
AcoI YGGCCR 2 cut(s) 388, 684
AcsI RAATTY 2 cut(s) 1358, 1427
AfaI GTAC 2 cut(s) 858, 1116
AfiI CCNNNNNNNGG 2 cut(s) 608, 752
AflIII ACRYGT 1 cut(s) 180
AgsI TTSAA 8 cut(s) 496, 881, 1052, 1110, 1134, 1166, 1184, 1344
AjnI CCWGG 1 cut(s) 1027
AjuI GAANNNNNNNTTGG 2 cut(s) 749, 781
Alw21I GWGCWC 2 cut(s) 72, 1417
Alw26I GTCTC 7 cut(s) 197, 287, 829, 989, 1060, 1202, 1410
AlwI GGATC 6 cut(s) 507, 803, 942, 955, 1027, 1040
AlwNI CAGNNNCTG 1 cut(s) 1479
Ama87I CYCGRG 2 cut(s) 65, 1282
Aor13HI TCCGGA 1 cut(s) 289
AoxI GGCC 2 cut(s) 388, 684
ApeKI GCWGC 3 cut(s) 89, 277, 1265
ApoI RAATTY 2 cut(s) 1358, 1427
ArsI GACNNNNNNTTYG 2 cut(s) 1127, 1159
AsuHPI GGTGA 2 cut(s) 226, 904
AsuII TTCGAA 1 cut(s) 981
AvaI CYCGRG 2 cut(s) 65, 1282
BalI TGGCCA 1 cut(s) 390
BamHI GGATCC 2 cut(s) 947, 1032
BanII GRGCYC 1 cut(s) 1417
BauI CACGAG 1 cut(s) 42
BbsI GAAGAC 1 cut(s) 764
Bbv12I GWGCWC 2 cut(s) 72, 1417
BbvI GCAGC 3 cut(s) 76, 289, 1277
BccI CCATC 8 cut(s) 2, 44, 103, 239, 602, 627, 695, 1189
BceAI ACGGC 1 cut(s) 699
BciT130I CCWGG 1 cut(s) 1029
BciVI GTATCC 1 cut(s) 297
BclI TGATCA 1 cut(s) 343
BcoDI GTCTC 7 cut(s) 197, 287, 829, 989, 1060, 1202, 1410
BfaI CTAG 5 cut(s) 369, 1118, 1178, 1439, 1467
BfuI GTATCC 1 cut(s) 297
BglI GCCNNNNNGGC 1 cut(s) 683
BisI GCNGC 4 cut(s) 90, 278, 678, 1266
BlsI GCNGC 4 cut(s) 91, 279, 679, 1267
BmcAI AGTACT 1 cut(s) 858
Bme1390I CCNGG 1 cut(s) 1029
BmeT110I CYCGRG 2 cut(s) 65, 1282
BmiI GGNNCC 3 cut(s) 600, 949, 1034
BmrFI CCNGG 1 cut(s) 1029
BmsI GCATC 1 cut(s) 529
BpiI GAAGAC 1 cut(s) 764
Bpu14I TTCGAA 1 cut(s) 981
BpuEI CTTGAG 1 cut(s) 648
BsaAI YACGTR 1 cut(s) 629
BsaBI GATNNNNATC 2 cut(s) 543, 1318
BsaI GGTCTC 2 cut(s) 197, 989
BsaJI CCNNGG 3 cut(s) 681, 888, 1028
BsaWI WCCGGW 1 cut(s) 289
Bsc4I CCNNNNNNNGG 2 cut(s) 608, 752
Bse1I ACTGG 3 cut(s) 355, 581, 587
Bse8I GATNNNNATC 2 cut(s) 543, 1318
BseAI TCCGGA 1 cut(s) 289
BseBI CCWGG 1 cut(s) 1029
BseDI CCNNGG 3 cut(s) 681, 888, 1028
BseGI GGATG 6 cut(s) 55, 95, 544, 574, 1084, 1162
BseJI GATNNNNATC 2 cut(s) 543, 1318
BseLI CCNNNNNNNGG 2 cut(s) 608, 752
BseMII CTCAG 4 cut(s) 390, 609, 953, 984
BseNI ACTGG 3 cut(s) 355, 581, 587
BseRI GAGGAG 2 cut(s) 577, 812
BseXI GCAGC 3 cut(s) 76, 289, 1277
BsgI GTGCAG 1 cut(s) 75
Bsh1285I CGRYCG 1 cut(s) 1174
BshFI GGCC 2 cut(s) 390, 686
BsiEI CGRYCG 1 cut(s) 1174
BsiHKAI GWGCWC 2 cut(s) 72, 1417
BsiHKCI CYCGRG 2 cut(s) 65, 1282
BsiSI CCGG 2 cut(s) 81, 290
BslFI GGGAC 1 cut(s) 208
BslI CCNNNNNNNGG 2 cut(s) 608, 752
BsmAI GTCTC 7 cut(s) 197, 287, 829, 989, 1060, 1202, 1410
BsmFI GGGAC 1 cut(s) 208
BsnI GGCC 2 cut(s) 390, 686
Bso31I GGTCTC 2 cut(s) 197, 989
BsoBI CYCGRG 2 cut(s) 65, 1282
Bsp119I TTCGAA 1 cut(s) 981
Bsp1286I GDGCHC 2 cut(s) 72, 1417
Bsp13I TCCGGA 1 cut(s) 289
Bsp19I CCATGG 1 cut(s) 888
BspACI CCGC 3 cut(s) 189, 678, 1268
BspANI GGCC 2 cut(s) 390, 686
BspCNI CTCAG 4 cut(s) 391, 610, 952, 985
BspEI TCCGGA 1 cut(s) 289
BspLI GGNNCC 3 cut(s) 600, 949, 1034
BspPI GGATC 6 cut(s) 507, 803, 942, 955, 1027, 1040
BspT104I TTCGAA 1 cut(s) 981
BspTNI GGTCTC 2 cut(s) 197, 989
BsrI ACTGG 3 cut(s) 355, 581, 587
BssECI CCNNGG 3 cut(s) 681, 888, 1028
BssSI CACGAG 1 cut(s) 42
BssT1I CCWWGG 1 cut(s) 888
Bst2BI CACGAG 1 cut(s) 42
Bst2UI CCWGG 1 cut(s) 1029
Bst4CI ACNGT 2 cut(s) 955, 1191
Bst6I CTCTTC 3 cut(s) 43, 896, 962
BstBAI YACGTR 1 cut(s) 629
BstBI TTCGAA 1 cut(s) 981
BstC8I GCNNGC 2 cut(s) 56, 113
BstDEI CTNAG 6 cut(s) 399, 618, 939, 961, 993, 1329
BstDSI CCRYGG 2 cut(s) 681, 888
BstEII GGTNACC 1 cut(s) 582
BstF5I GGATG 6 cut(s) 55, 95, 544, 574, 1084, 1162
BstMAI GTCTC 7 cut(s) 197, 287, 829, 989, 1060, 1202, 1410
BstMCI CGRYCG 1 cut(s) 1174
BstMWI GCNNNNNNNGC 3 cut(s) 86, 683, 692
BstNI CCWGG 1 cut(s) 1029
BstNSI RCATGY 3 cut(s) 58, 89, 184
BstPI GGTNACC 1 cut(s) 582
BstSCI CCNGG 1 cut(s) 1027
BstV1I GCAGC 3 cut(s) 76, 289, 1277
BstV2I GAAGAC 1 cut(s) 764
BstX2I RGATCY 2 cut(s) 947, 1032
BstYI RGATCY 2 cut(s) 947, 1032
BsuI GTATCC 1 cut(s) 297
BsuRI GGCC 2 cut(s) 390, 686
BtgI CCRYGG 2 cut(s) 681, 888
BtsCI GGATG 6 cut(s) 55, 95, 544, 574, 1084, 1162
BtsIMutI CAGTG 4 cut(s) 396, 947, 951, 1477
Cac8I GCNNGC 2 cut(s) 56, 113
CaiI CAGNNNCTG 1 cut(s) 1479
Csp6I GTAC 2 cut(s) 857, 1115
CviAII CATG 9 cut(s) 55, 86, 133, 181, 406, 698, 889, 1396, 1456
CviQI GTAC 2 cut(s) 857, 1115
DdeI CTNAG 6 cut(s) 399, 618, 939, 961, 993, 1329
DrdI GACNNNNNNGTC 1 cut(s) 821
DseDI GACNNNNNNGTC 1 cut(s) 821
EaeI YGGCCR 2 cut(s) 388, 684
Eam1104I CTCTTC 3 cut(s) 43, 896, 962
EarI CTCTTC 3 cut(s) 43, 896, 962
Ecl136II GAGCTC 1 cut(s) 1415
Eco130I CCWWGG 1 cut(s) 888
Eco24I GRGCYC 1 cut(s) 1417
Eco31I GGTCTC 2 cut(s) 197, 989
Eco53kI GAGCTC 1 cut(s) 1415
Eco88I CYCGRG 2 cut(s) 65, 1282
Eco91I GGTNACC 1 cut(s) 582
EcoICRI GAGCTC 1 cut(s) 1415
EcoO65I GGTNACC 1 cut(s) 582
EcoRI GAATTC 1 cut(s) 1358
EcoRII CCWGG 1 cut(s) 1027
EcoT14I CCWWGG 1 cut(s) 888
EcoT22I ATGCAT 1 cut(s) 60
EcoT38I GRGCYC 1 cut(s) 1417
ErhI CCWWGG 1 cut(s) 888
FaeI CATG 9 cut(s) 58, 89, 136, 184, 409, 701, 892, 1399, 1459
FalI AAGNNNNNCTT 2 cut(s) 749, 781
FaqI GGGAC 1 cut(s) 208
FatI CATG 9 cut(s) 54, 85, 132, 180, 405, 697, 888, 1395, 1455
FbaI TGATCA 1 cut(s) 343
Fnu4HI GCNGC 4 cut(s) 90, 278, 678, 1266
FokI GGATG 6 cut(s) 62, 82, 551, 581, 1091, 1169
FriOI GRGCYC 1 cut(s) 1417
Fsp4HI GCNGC 4 cut(s) 90, 278, 678, 1266
FspBI CTAG 5 cut(s) 369, 1118, 1178, 1439, 1467
GluI GCNGC 4 cut(s) 90, 278, 678, 1266
HaeIII GGCC 2 cut(s) 390, 686
HapII CCGG 2 cut(s) 81, 290
Hin1II CATG 9 cut(s) 58, 89, 136, 184, 409, 701, 892, 1399, 1459
HincII GTYRAC 1 cut(s) 843
HindII GTYRAC 1 cut(s) 843
HindIII AAGCTT 2 cut(s) 763, 882
HinfI GANTC 9 cut(s) 153, 248, 464, 623, 643, 653, 737, 1123, 1232
HpaII CCGG 2 cut(s) 81, 290
HphI GGTGA 2 cut(s) 226, 904
Hpy166II GTNNAC 1 cut(s) 843
Hpy188III TCNNGA 9 cut(s) 21, 290, 369, 476, 722, 812, 898, 1146, 1163
Hpy8I GTNNAC 1 cut(s) 843
HpyAV CCTTC 4 cut(s) 139, 375, 752, 1378
HpyCH4III ACNGT 2 cut(s) 955, 1191
HpyCH4IV ACGT 2 cut(s) 628, 717
HpyCH4V TGCA 7 cut(s) 58, 92, 277, 542, 640, 715, 1265
HpyF10VI GCNNNNNNNGC 3 cut(s) 86, 683, 692
HpyF3I CTNAG 6 cut(s) 399, 618, 939, 961, 993, 1329
HpySE526I ACGT 2 cut(s) 628, 717
Hsp92II CATG 9 cut(s) 58, 89, 136, 184, 409, 701, 892, 1399, 1459
Kpn2I TCCGGA 1 cut(s) 289
Ksp22I TGATCA 1 cut(s) 343
LmnI GCTCC 1 cut(s) 973
Lsp1109I GCAGC 3 cut(s) 76, 289, 1277
LweI GCATC 1 cut(s) 529
MaeI CTAG 5 cut(s) 369, 1118, 1178, 1439, 1467
MaeII ACGT 2 cut(s) 628, 717
MaeIII GTNAC 3 cut(s) 409, 582, 1469
MboII GAAGA 8 cut(s) 30, 464, 769, 913, 919, 979, 1354, 1435
MflI RGATCY 2 cut(s) 947, 1032
MhlI GDGCHC 2 cut(s) 72, 1417
MlsI TGGCCA 1 cut(s) 390
MluCI AATT 6 cut(s) 272, 304, 392, 1022, 1358, 1427
MluNI TGGCCA 1 cut(s) 390
MlyI GAGTC 2 cut(s) 458, 1132
MmeI TCCRAC 2 cut(s) 626, 1063
Mox20I TGGCCA 1 cut(s) 390
Mph1103I ATGCAT 1 cut(s) 60
MroI TCCGGA 1 cut(s) 289
MscI TGGCCA 1 cut(s) 390
MseI TTAA 3 cut(s) 594, 672, 1065
MslI CAYNNNNRTG 2 cut(s) 137, 631
Msp20I TGGCCA 1 cut(s) 390
MspA1I CMGCKG 1 cut(s) 1268
MspI CCGG 2 cut(s) 81, 290
MspR9I CCNGG 1 cut(s) 1029
MvaI CCWGG 1 cut(s) 1029
MwoI GCNNNNNNNGC 3 cut(s) 86, 683, 692
NcoI CCATGG 1 cut(s) 888
NlaIII CATG 9 cut(s) 58, 89, 136, 184, 409, 701, 892, 1399, 1459
NlaIV GGNNCC 3 cut(s) 600, 949, 1034
NmuCI GTSAC 1 cut(s) 1469
NsiI ATGCAT 1 cut(s) 60
NspI RCATGY 3 cut(s) 58, 89, 184
NspV TTCGAA 1 cut(s) 981
PaeI GCATGC 1 cut(s) 58
PaeR7I CTCGAG 1 cut(s) 1282
PciI ACATGT 1 cut(s) 180
PfeI GAWTC 7 cut(s) 153, 248, 623, 643, 653, 737, 1232
PflMI CCANNNNNTGG 2 cut(s) 608, 752
PkrI GCNGC 4 cut(s) 91, 279, 679, 1267
Ple19I CGATCG 1 cut(s) 1174
PleI GAGTC 2 cut(s) 458, 1131
PpsI GAGTC 2 cut(s) 458, 1131
Ppu21I YACGTR 1 cut(s) 629
PscI ACATGT 1 cut(s) 180
Psp124BI GAGCTC 1 cut(s) 1417
Psp6I CCWGG 1 cut(s) 1027
PspEI GGTNACC 1 cut(s) 582
PspGI CCWGG 1 cut(s) 1027
PspN4I GGNNCC 3 cut(s) 600, 949, 1034
PspXI VCTCGAGB 1 cut(s) 1282
PsrI GAACNNNNNNTAC 2 cut(s) 840, 872
PstNI CAGNNNCTG 1 cut(s) 1479
PsuI RGATCY 2 cut(s) 947, 1032
PvuI CGATCG 1 cut(s) 1174
RsaI GTAC 2 cut(s) 858, 1116
RsaNI GTAC 2 cut(s) 857, 1115
RseI CAYNNNNRTG 2 cut(s) 137, 631
SacI GAGCTC 1 cut(s) 1417
SaqAI TTAA 3 cut(s) 594, 672, 1065
SatI GCNGC 4 cut(s) 90, 278, 678, 1266
ScaI AGTACT 1 cut(s) 858
SchI GAGTC 2 cut(s) 458, 1132
ScrFI CCNGG 1 cut(s) 1029
SduI GDGCHC 2 cut(s) 72, 1417
SfaNI GCATC 1 cut(s) 529
Sfr274I CTCGAG 1 cut(s) 1282
SfuI TTCGAA 1 cut(s) 981
SlaI CTCGAG 1 cut(s) 1282
SmiMI CAYNNNNRTG 2 cut(s) 137, 631
SmlI CTYRAG 2 cut(s) 663, 1282
SmoI CTYRAG 2 cut(s) 663, 1282
SphI GCATGC 1 cut(s) 58
Sse9I AATT 6 cut(s) 272, 304, 392, 1022, 1358, 1427
SsiI CCGC 3 cut(s) 189, 678, 1268
SspMI CTAG 5 cut(s) 369, 1118, 1178, 1439, 1467
SstI GAGCTC 1 cut(s) 1417
StyD4I CCNGG 1 cut(s) 1027
StyI CCWWGG 1 cut(s) 888
TaaI ACNGT 2 cut(s) 955, 1191
TaiI ACGT 2 cut(s) 631, 720
TaqI TCGA 5 cut(s) 6, 251, 477, 981, 1283
TasI AATT 6 cut(s) 272, 304, 392, 1022, 1358, 1427
TatI WGTACW 1 cut(s) 856
TauI GCSGC 1 cut(s) 680
TfiI GAWTC 7 cut(s) 153, 248, 623, 643, 653, 737, 1232
Tru1I TTAA 3 cut(s) 594, 672, 1065
Tru9I TTAA 3 cut(s) 594, 672, 1065
TscAI CASTG 3 cut(s) 403, 947, 958
TseFI GTSAC 1 cut(s) 1469
TseI GCWGC 3 cut(s) 89, 277, 1265
Tsp45I GTSAC 1 cut(s) 1469
TspDTI ATGAA 6 cut(s) 18, 158, 284, 1291, 1415, 1422
TspGWI ACGGA 1 cut(s) 860
TspRI CASTG 3 cut(s) 403, 947, 958
Van91I CCANNNNNTGG 2 cut(s) 608, 752
XapI RAATTY 2 cut(s) 1358, 1427
XbaI TCTAGA 1 cut(s) 368
XceI RCATGY 3 cut(s) 58, 89, 184
XhoI CTCGAG 1 cut(s) 1282
XspI CTAG 5 cut(s) 369, 1118, 1178, 1439, 1467
ZrmI AGTACT 1 cut(s) 858
Zsp2I ATGCAT 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.