FvH4_1g04400

guanine nucleotide exchange factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0010910
Physical Location & Seq
Reverse (-)
2348610 .. 2351636
3027 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g04400.t1

Sequence Viewer

Length: 1548 bp
ATGGTCCGAGCTTTTGCTACCCAAAAAACAATGCAGAAAACGAAATCTTTCCAGTTGAAACGGATGTTCGAGTTCCAAGCTGGGAGACATCTACCGGATTTGGTATTCGATCATGATGTGAATGAGGATGAACAATTGTTAAGTGCTGCTGCAGAAGAGCCCCCATCACCTCAAGCCGAAAAGATTGCAACTCCTAAATGCAACGGGCCATCAGATATGGAATTGATGAAGGAAAGGTTTTCGAAGCTGCTTTTGGGTGAAGACATGTCAGGTGGTGGAAAGGGTGTATCTTCAGCTTTGGCTTTATCAAATGCCATAACAAATCTAGCAGCATCTGTTTTTGGAGAAACAAGGAAGCTAGAGCCCATGTCTCCTGATAGGAAAGCGAGATGGGTGAAAGAAATTGGCTGGCTTCTGTCTGTGACTGATCACATTGTTGAATTTGTCCCTTCACAACAAAATGGAACAAACATGGAGATAATGGTGACTCAACAAAGGAAGGATCTGCATATGGACATCCCTGCCTTACGCAAGCTCGACGCCATGCTTCTTGGACACCTGGAGAGTTTTGCAAACCCAAGTGAGTTCTGGTATGTGAAAAGAGATGCCCAAGATGATGAGAAAAGTAGCAAACCAAATAGAAATGATGAAAAATGGTGGTTACCAACTGTCAAAGTACCATCAGAAGGTTTATCGGATGAGTGTCGAAAATGGCTGCAGTTTCAGAAGGAGTCTGTCAACCAGGTACTAAAAGCAGCAATGGCAATCAATGCTCAAGTACTATCAGAAATGGAGGTACCTGAGAACTACATTGAATCCCTTCCCAAGAATGGTAGAGCTAGCTTGGGTGATACAATCTACAAGAGCATAACTGAGGAACAGTTTGACCCTCTAGAATTCCTAATGAGCATGGACTTGTCCTCAGAGCACAAAGTGCTCGACCTCAAAGACAGGATTGAGGCCTCCATTGTGATTTGGAAGAGGAAGATTAGCCACAAGGATGGCAAGTCTTCATGGAGTTCTGGGGTGAGTTTCGAGAAGAGGGAACGATTTGAAGAGAGAGCAGAGACTGTCTTACTCATAATCAAACAGAAGTTCCCAGGAATTCCCCAATCTGCACTTGACATAAGTAAAATCCAATACAATAAGGATGTCGGGTATGCTATCCTGGAGAGCTATTCAAGGGTAATAGAAAGCTTGGCTTTTAATGTCATGTCGATGATAGATGATGTCCTTTATGCTGATAAGAAAACGCGAGCGGAGAAAGCAAACAGGAGGCTTTCAGTGGATTCATTTGCCTCAGAAGATCCTGACAGGTTGAGTTGCACAGGGACACCGAGTTCAAAGACATTGTTTGAGTTCATGGGATGGAATCAAGATCTAGATACGGAGAACTTTGCGGAGAAGAATAACAAGGAGAGTTACTACAAAGAAGACAGTGATAAGATCATGAGCAAACCACCACCTGCTGTAAGCACCAAGAGGTTTTCATATTTAGAAAAGCTCGAGAAGTTGAGTGGTCTAAGAAGTCCAACAGCTCGACATTGA

Protein Analysis

516

Amino Acids

58.59

Weight (kDa)

5.83

Isoelectric Point (pI)

50.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRONE PF03759 71 - 419 2.6e-168 PRONE (Plant-specific Rop nucleotide exchanger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010910)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19560 AT5G19560 AT5G19560 AT5G19560 AT5G19560
fragaria_vesca FvH4_1g04400
malus_domestica MD02G1043700.v1.1 MD15G1182200.v1.1
prunus_persica Prupe.7G233200_v2.0.a1
pyrus_communis pycom15g16460
rosa_chinensis RchiOBHm_Chr2g0090051
rosa_laevigata RLG00000016081
rosa_multiflora Rmu_sc0000226.1_g000006
rosa_roxburghii Rroxscaffold_2G00151440
rosa_rugosa Rorug02G0005000
rosa_samantha Rh2AG050600 Rh2BG049200 Rh2CG051400 Rh2DG050800
rosa_wichuraiana Rw2G004000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1474
Acc36I ACCTGC 1 cut(s) 1474
Acc65I GGTACC 1 cut(s) 796
AccB1I GGYRCC 1 cut(s) 796
AccBSI CCGCTC 1 cut(s) 1259
AccII CGCG 1 cut(s) 1255
AciI CCGC 2 cut(s) 1259, 1400
AclWI GGATC 2 cut(s) 510, 1301
AcsI RAATTY 3 cut(s) 440, 896, 1104
AcuI CTGAAG 1 cut(s) 276
AcyI GRCGYC 1 cut(s) 540
AdeI CACNNNGTG 1 cut(s) 934
AfaI GTAC 4 cut(s) 678, 747, 780, 798
AfiI CCNNNNNNNGG 2 cut(s) 686, 830
AflIII ACRYGT 1 cut(s) 264
AgsI TTSAA 6 cut(s) 58, 440, 815, 1055, 1182, 1344
AjnI CCWGG 4 cut(s) 558, 741, 1099, 1167
AjuI GAANNNNNNNTTGG 2 cut(s) 236, 268
AloI GAACNNNNNNTCC 2 cut(s) 1324, 1356
Alw21I GWGCWC 2 cut(s) 930, 939
Alw26I GTCTC 3 cut(s) 79, 375, 1061
AlwI GGATC 2 cut(s) 510, 1301
AlwNI CAGNNNCTG 2 cut(s) 335, 1070
Ama87I CYCGRG 1 cut(s) 1505
AoxI GGCC 2 cut(s) 206, 960
ApeKI GCWGC 6 cut(s) 146, 149, 247, 329, 715, 755
ApoI RAATTY 3 cut(s) 440, 896, 1104
Asp700I GAANNNNTTC 2 cut(s) 47, 819
Asp718I GGTACC 1 cut(s) 796
AspS9I GGNCC 2 cut(s) 4, 206
AsuHPI GGTGA 6 cut(s) 159, 269, 406, 496, 860, 1039
AsuII TTCGAA 1 cut(s) 242
AsuNHI GCTAGC 1 cut(s) 839
AvaI CYCGRG 1 cut(s) 1505
AvaII GGWCC 1 cut(s) 4
BanI GGYRCC 1 cut(s) 796
BanII GRGCYC 2 cut(s) 162, 366
BbsI GAAGAC 3 cut(s) 267, 1002, 1440
Bbv12I GWGCWC 2 cut(s) 930, 939
BbvI GCAGC 6 cut(s) 133, 136, 234, 341, 702, 767
BccI CCATC 6 cut(s) 172, 217, 384, 688, 995, 1362
BcgI CGANNNNNNTGC 2 cut(s) 167, 201
BciT130I CCWGG 4 cut(s) 560, 743, 1101, 1169
BclI TGATCA 1 cut(s) 427
BcoDI GTCTC 3 cut(s) 79, 375, 1061
BfaI CTAG 5 cut(s) 326, 359, 840, 893, 1382
BfmI CTRYAG 2 cut(s) 150, 716
BfuAI ACCTGC 1 cut(s) 1474
BglII AGATCT 1 cut(s) 1378
BisI GCNGC 6 cut(s) 147, 150, 248, 330, 716, 756
BlsI GCNGC 6 cut(s) 148, 151, 249, 331, 717, 757
BmcAI AGTACT 1 cut(s) 780
Bme1390I CCNGG 4 cut(s) 560, 743, 1101, 1169
Bme18I GGWCC 1 cut(s) 4
BmeT110I CYCGRG 1 cut(s) 1505
BmgT120I GGNCC 2 cut(s) 4, 206
BmiI GGNNCC 1 cut(s) 798
BmrFI CCNGG 4 cut(s) 560, 743, 1101, 1169
BmsI GCATC 2 cut(s) 341, 595
BmtI GCTAGC 1 cut(s) 843
BpiI GAAGAC 3 cut(s) 267, 1002, 1440
BpmI CTGGAG 2 cut(s) 581, 1190
Bpu14I TTCGAA 1 cut(s) 242
BpuEI CTTGAG 2 cut(s) 156, 759
BsaHI GRCGYC 1 cut(s) 540
BsaJI CCNNGG 1 cut(s) 1099
BsaWI WCCGGW 1 cut(s) 94
Bsc4I CCNNNNNNNGG 2 cut(s) 686, 830
Bse1I ACTGG 1 cut(s) 52
Bse3DI GCAATG 1 cut(s) 765
BseBI CCWGG 4 cut(s) 560, 743, 1101, 1169
BseDI CCNNGG 1 cut(s) 1099
BseGI GGATG 7 cut(s) 69, 133, 516, 703, 1006, 1156, 1373
BseLI CCNNNNNNNGG 2 cut(s) 686, 830
BseMI GCAATG 1 cut(s) 765
BseMII CTCAG 4 cut(s) 792, 864, 936, 1314
BseNI ACTGG 1 cut(s) 52
BseXI GCAGC 6 cut(s) 133, 136, 234, 341, 702, 767
BseYI CCCAGC 1 cut(s) 80
BsgI GTGCAG 1 cut(s) 1101
Bsh1236I CGCG 1 cut(s) 1255
BshFI GGCC 2 cut(s) 208, 962
BshNI GGYRCC 1 cut(s) 796
BsiHKAI GWGCWC 2 cut(s) 930, 939
BsiHKCI CYCGRG 1 cut(s) 1505
BsiSI CCGG 1 cut(s) 95
BslFI GGGAC 2 cut(s) 431, 1345
BslI CCNNNNNNNGG 2 cut(s) 686, 830
BsmAI GTCTC 3 cut(s) 79, 375, 1061
BsmFI GGGAC 2 cut(s) 431, 1345
BsnI GGCC 2 cut(s) 208, 962
BsoBI CYCGRG 1 cut(s) 1505
Bsp119I TTCGAA 1 cut(s) 242
Bsp1286I GDGCHC 4 cut(s) 162, 366, 930, 939
Bsp143I GATC 6 cut(s) 109, 427, 502, 1306, 1378, 1446
BspACI CCGC 2 cut(s) 1259, 1400
BspANI GGCC 2 cut(s) 208, 962
BspCNI CTCAG 4 cut(s) 793, 865, 935, 1313
BspFNI CGCG 1 cut(s) 1255
BspHI TCATGA 2 cut(s) 112, 1449
BspLI GGNNCC 1 cut(s) 798
BspMAI CTGCAG 2 cut(s) 154, 720
BspMI ACCTGC 1 cut(s) 1474
BspOI GCTAGC 1 cut(s) 843
BspPI GGATC 2 cut(s) 510, 1301
BspQI GCTCTTC 1 cut(s) 150
BspT104I TTCGAA 1 cut(s) 242
BspT107I GGYRCC 1 cut(s) 796
BsrBI CCGCTC 1 cut(s) 1259
BsrDI GCAATG 1 cut(s) 765
BsrI ACTGG 1 cut(s) 52
BssECI CCNNGG 1 cut(s) 1099
BssMI GATC 6 cut(s) 109, 427, 502, 1306, 1378, 1446
BssNI GRCGYC 1 cut(s) 540
Bst2UI CCWGG 4 cut(s) 560, 743, 1101, 1169
Bst4CI ACNGT 4 cut(s) 670, 882, 1072, 1439
Bst6I CTCTTC 4 cut(s) 150, 974, 1034, 1050
BstACI GRCGYC 1 cut(s) 540
BstAPI GCANNNNNTGC 2 cut(s) 770, 934
BstBI TTCGAA 1 cut(s) 242
BstC8I GCNNGC 4 cut(s) 410, 533, 841, 1257
BstDEI CTNAG 5 cut(s) 801, 873, 922, 1300, 1523
BstEII GGTNACC 1 cut(s) 660
BstF5I GGATG 7 cut(s) 69, 133, 516, 703, 1006, 1156, 1373
BstFNI CGCG 1 cut(s) 1255
BstKTI GATC 6 cut(s) 112, 430, 505, 1309, 1381, 1449
BstMAI GTCTC 3 cut(s) 79, 375, 1061
BstMBI GATC 6 cut(s) 109, 427, 502, 1306, 1378, 1446
BstMWI GCNNNNNNNGC 4 cut(s) 761, 770, 934, 1265
BstNI CCWGG 4 cut(s) 560, 743, 1101, 1169
BstNSI RCATGY 1 cut(s) 268
BstPI GGTNACC 1 cut(s) 660
BstSCI CCNGG 4 cut(s) 558, 741, 1099, 1167
BstSFI CTRYAG 2 cut(s) 150, 716
BstUI CGCG 1 cut(s) 1255
BstV1I GCAGC 6 cut(s) 133, 136, 234, 341, 702, 767
BstV2I GAAGAC 3 cut(s) 267, 1002, 1440
BstX2I RGATCY 3 cut(s) 502, 1306, 1378
BstXI CCANNNNNNTGG 1 cut(s) 1001
BstYI RGATCY 3 cut(s) 502, 1306, 1378
BsuRI GGCC 2 cut(s) 208, 962
BtsCI GGATG 7 cut(s) 69, 133, 516, 703, 1006, 1156, 1373
BtsIMutI CAGTG 2 cut(s) 1290, 1444
BveI ACCTGC 1 cut(s) 1474
Cac8I GCNNGC 4 cut(s) 410, 533, 841, 1257
CaiI CAGNNNCTG 2 cut(s) 335, 1070
CciI TCATGA 2 cut(s) 112, 1449
Cfr13I GGNCC 2 cut(s) 4, 206
CseI GACGC 1 cut(s) 548
CsiI ACCWGGT 1 cut(s) 741
Csp6I GTAC 4 cut(s) 677, 746, 779, 797
CviQI GTAC 4 cut(s) 677, 746, 779, 797
DdeI CTNAG 5 cut(s) 801, 873, 922, 1300, 1523
DpnI GATC 6 cut(s) 111, 429, 504, 1308, 1380, 1448
DpnII GATC 6 cut(s) 109, 427, 502, 1306, 1378, 1446
DraIII CACNNNGTG 1 cut(s) 934
Eam1104I CTCTTC 4 cut(s) 150, 974, 1034, 1050
EarI CTCTTC 4 cut(s) 150, 974, 1034, 1050
Eco147I AGGCCT 1 cut(s) 962
Eco24I GRGCYC 2 cut(s) 162, 366
Eco47I GGWCC 1 cut(s) 4
Eco57I CTGAAG 1 cut(s) 276
Eco88I CYCGRG 1 cut(s) 1505
Eco91I GGTNACC 1 cut(s) 660
EcoO65I GGTNACC 1 cut(s) 660
EcoRI GAATTC 2 cut(s) 896, 1104
EcoRII CCWGG 4 cut(s) 558, 741, 1099, 1167
EcoT38I GRGCYC 2 cut(s) 162, 366
FalI AAGNNNNNCTT 2 cut(s) 1186, 1218
FaqI GGGAC 2 cut(s) 431, 1345
FauNDI CATATG 1 cut(s) 510
FbaI TGATCA 1 cut(s) 427
Fnu4HI GCNGC 6 cut(s) 147, 150, 248, 330, 716, 756
FokI GGATG 7 cut(s) 76, 140, 503, 710, 1013, 1163, 1380
FriOI GRGCYC 2 cut(s) 162, 366
Fsp4HI GCNGC 6 cut(s) 147, 150, 248, 330, 716, 756
FspBI CTAG 5 cut(s) 326, 359, 840, 893, 1382
GluI GCNGC 6 cut(s) 147, 150, 248, 330, 716, 756
GsaI CCCAGC 1 cut(s) 84
GsuI CTGGAG 2 cut(s) 581, 1190
HaeIII GGCC 2 cut(s) 208, 962
HapII CCGG 1 cut(s) 95
HgaI GACGC 1 cut(s) 548
Hin1I GRCGYC 1 cut(s) 540
HincII GTYRAC 1 cut(s) 739
HindII GTYRAC 1 cut(s) 739
HindIII AAGCTT 1 cut(s) 1195
HinfI GANTC 5 cut(s) 487, 731, 815, 1289, 1372
HpaII CCGG 1 cut(s) 95
HphI GGTGA 6 cut(s) 159, 269, 406, 496, 860, 1039
Hpy166II GTNNAC 1 cut(s) 739
Hpy188I TCNGA 8 cut(s) 8, 214, 685, 697, 726, 787, 925, 1303
Hpy188III TCNNGA 9 cut(s) 113, 374, 893, 1036, 1310, 1376, 1382, 1450, 1507
Hpy8I GTNNAC 1 cut(s) 739
Hpy99I CGWCG 1 cut(s) 542
HpyAV CCTTC 6 cut(s) 223, 459, 493, 680, 721, 830
HpyCH4III ACNGT 4 cut(s) 670, 882, 1072, 1439
HpyCH4V TGCA 9 cut(s) 34, 152, 188, 201, 508, 572, 718, 1118, 1326
HpyF10VI GCNNNNNNNGC 4 cut(s) 761, 770, 934, 1265
HpyF3I CTNAG 5 cut(s) 801, 873, 922, 1300, 1523
Hsp92I GRCGYC 1 cut(s) 540
KpnI GGTACC 1 cut(s) 800
Ksp22I TGATCA 1 cut(s) 427
Kzo9I GATC 6 cut(s) 109, 427, 502, 1306, 1378, 1446
LguI GCTCTTC 1 cut(s) 150
Lsp1109I GCAGC 6 cut(s) 133, 136, 234, 341, 702, 767
LweI GCATC 2 cut(s) 341, 595
MabI ACCWGGT 1 cut(s) 741
MaeI CTAG 5 cut(s) 326, 359, 840, 893, 1382
MaeIII GTNAC 4 cut(s) 421, 484, 660, 1421
MalI GATC 6 cut(s) 111, 429, 504, 1308, 1380, 1448
MbiI CCGCTC 1 cut(s) 1259
MboI GATC 6 cut(s) 109, 427, 502, 1306, 1378, 1446
MfeI CAATTG 1 cut(s) 134
MflI RGATCY 3 cut(s) 502, 1306, 1378
MhlI GDGCHC 4 cut(s) 162, 366, 930, 939
MluCI AATT 6 cut(s) 134, 221, 402, 440, 896, 1104
MlyI GAGTC 2 cut(s) 481, 740
MroXI GAANNNNTTC 2 cut(s) 47, 819
MseI TTAA 2 cut(s) 140, 1206
MslI CAYNNNNRTG 2 cut(s) 999, 1217
MspI CCGG 1 cut(s) 95
MspR9I CCNGG 4 cut(s) 560, 743, 1101, 1169
MunI CAATTG 1 cut(s) 134
MvaI CCWGG 4 cut(s) 560, 743, 1101, 1169
MvnI CGCG 1 cut(s) 1255
MwoI GCNNNNNNNGC 4 cut(s) 761, 770, 934, 1265
NdeI CATATG 1 cut(s) 510
NdeII GATC 6 cut(s) 109, 427, 502, 1306, 1378, 1446
NheI GCTAGC 1 cut(s) 839
NlaIV GGNNCC 1 cut(s) 798
NmuCI GTSAC 2 cut(s) 421, 484
NspI RCATGY 1 cut(s) 268
NspV TTCGAA 1 cut(s) 242
PaeR7I CTCGAG 1 cut(s) 1505
PagI TCATGA 2 cut(s) 112, 1449
PaqCI CACCTGC 1 cut(s) 1474
PceI AGGCCT 1 cut(s) 962
PciI ACATGT 1 cut(s) 264
PciSI GCTCTTC 1 cut(s) 150
PdmI GAANNNNTTC 2 cut(s) 47, 819
PfeI GAWTC 3 cut(s) 815, 1289, 1372
PfoI TCCNGGA 1 cut(s) 1167
PkrI GCNGC 6 cut(s) 148, 151, 249, 331, 717, 757
PleI GAGTC 2 cut(s) 481, 739
PpsI GAGTC 2 cut(s) 481, 739
PscI ACATGT 1 cut(s) 264
Psp6I CCWGG 4 cut(s) 558, 741, 1099, 1167
PspEI GGTNACC 1 cut(s) 660
PspFI CCCAGC 1 cut(s) 80
PspGI CCWGG 4 cut(s) 558, 741, 1099, 1167
PspN4I GGNNCC 1 cut(s) 798
PspPI GGNCC 2 cut(s) 4, 206
PstI CTGCAG 2 cut(s) 154, 720
PstNI CAGNNNCTG 2 cut(s) 335, 1070
PsuI RGATCY 3 cut(s) 502, 1306, 1378
RsaI GTAC 4 cut(s) 678, 747, 780, 798
RsaNI GTAC 4 cut(s) 677, 746, 779, 797
RseI CAYNNNNRTG 2 cut(s) 999, 1217
SapI GCTCTTC 1 cut(s) 150
SaqAI TTAA 2 cut(s) 140, 1206
SatI GCNGC 6 cut(s) 147, 150, 248, 330, 716, 756
Sau3AI GATC 6 cut(s) 109, 427, 502, 1306, 1378, 1446
Sau96I GGNCC 2 cut(s) 4, 206
ScaI AGTACT 1 cut(s) 780
SchI GAGTC 2 cut(s) 481, 740
ScrFI CCNGG 4 cut(s) 560, 743, 1101, 1169
SduI GDGCHC 4 cut(s) 162, 366, 930, 939
SexAI ACCWGGT 1 cut(s) 741
SfaNI GCATC 2 cut(s) 341, 595
SfcI CTRYAG 2 cut(s) 150, 716
Sfr274I CTCGAG 1 cut(s) 1505
SfuI TTCGAA 1 cut(s) 242
SinI GGWCC 1 cut(s) 4
SlaI CTCGAG 1 cut(s) 1505
SmiMI CAYNNNNRTG 2 cut(s) 999, 1217
SmlI CTYRAG 3 cut(s) 171, 774, 1505
SmoI CTYRAG 3 cut(s) 171, 774, 1505
Sse9I AATT 6 cut(s) 134, 221, 402, 440, 896, 1104
SseBI AGGCCT 1 cut(s) 962
SsiI CCGC 2 cut(s) 1259, 1400
SspMI CTAG 5 cut(s) 326, 359, 840, 893, 1382
StuI AGGCCT 1 cut(s) 962
StyD4I CCNGG 4 cut(s) 558, 741, 1099, 1167
TaaI ACNGT 4 cut(s) 670, 882, 1072, 1439
TasI AATT 6 cut(s) 134, 221, 402, 440, 896, 1104
TatI WGTACW 1 cut(s) 778
TfiI GAWTC 3 cut(s) 815, 1289, 1372
Tru1I TTAA 2 cut(s) 140, 1206
Tru9I TTAA 2 cut(s) 140, 1206
TscAI CASTG 2 cut(s) 1290, 1444
TseFI GTSAC 2 cut(s) 421, 484
TseI GCWGC 6 cut(s) 146, 149, 247, 329, 715, 755
Tsp45I GTSAC 2 cut(s) 421, 484
TspDTI ATGAA 7 cut(s) 144, 242, 663, 1002, 1281, 1351, 1479
TspGWI ACGGA 2 cut(s) 76, 1403
TspRI CASTG 2 cut(s) 1290, 1444
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 3 cut(s) 440, 896, 1104
XbaI TCTAGA 2 cut(s) 892, 1381
XceI RCATGY 1 cut(s) 268
XcmI CCANNNNNNNNNTGG 1 cut(s) 585
XhoI CTCGAG 1 cut(s) 1505
XmnI GAANNNNTTC 2 cut(s) 47, 819
XspI CTAG 5 cut(s) 326, 359, 840, 893, 1382
ZrmI AGTACT 1 cut(s) 780
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.