Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0010910

Physical Location & Seq

Genomic Coordinates Reverse (-)

4000138 .. 4004615

Gene Structure 4478 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG050600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

ATGCTCAGGAAATCTCCGGGTTATGTTCTTATTGTTTCTTGTCTTTGTGTCTATGACAATGCAGCATCCGTTTTTGGAGAAACAAGAAAACTAGAGCCCATGTCTCCTGATAGGAAAGCGAGATGGGTGAAAGAGATTGGCTGGCTTCTGTCCGTGACTGATCACATTGTGGAATTTGTCCCTTCACAACAAAATGGAACAAACATGGAGATAATGATGACTCAACAAAGGAAGGATCTGCACATTAACATTCCTGCCCTACGCAAGCTCGACGCCATGCTCCTTGGCCACCTTGAGAGTTTTGCAAACCCAAGTGAGTTCTGGTATGTGAAAAGAGATGCCCAAGATGATGAGAAAGGTAGCAAACTAGAGAGAAATGATGAAAAATGGTGGTTACCAACTGTCAAAGTCCCATCAGAAGGTCTATCGGATGAGTGTCGAAAATGGCTGCAGTTTCAGAAGGATTCTGTCCACCAAGTACTAAAAGCAGCAATGGCAATCAATGCTCAAGTACTATCAGAAATGGATGTACCTGAGAACTATATTGAATCCCTTCCCAAGAATGGTAGAGCTAGCTTGGGTGATACAATCTACAAGAGCATAACAGAGGAGCACTTTGACCCTCTAGAATTCCTAACGAGCATGGACTTGTCCTCAGAGCACAAAGTGGTAGACCTGAAAGACAGGATCGAGGCCTCCATTGTGATTTGGAAGAGGAAGATGAACCTCAAGGATGGAAAGTCTTCATGGAGTTCTGGGGTGAGTTTCGAGAAGAGGGAACGATTTGAAGAGAGAGTAGAGACCGTCTTACTCCTAATCAAACAGAAGTTCCCAGGAATTCCCCAATCTGCACTTGACATAAGTAAAATTCAATACAATAAGGATGTAGGGTATGCTATCCTGGAGAGCTATTCAAGGGTAATAGAAAGCTTGGCTTTCAATGTCATGTCGATGATAGATGATGTCCTTTTTGCTGATAAAAAGACGCGAACGGAGAAATCAAACAGGAGGCTTTCAGTGGATTCATATGCCTCAGAAGATCCTGACAGGTTGAGTTGTACAGGGACACCGAGTTCAAAGACATTGTTTGAGTTCATGGGATGGAATCAACTAGAGGAGACCGATGTGGATAAGAATAACAAGGAGAGCTATTATAAAGAAGACAGTGATCACAAGATTATGAGCAAACCACCACTTGCTGTAAGCACGAAGAGGTTTTCCTATTTAGAAAAGCTCGAGAAGTTGAGTGGTCTAAGAAGTCCAACAGCTCGCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005085 GO:0005088 GO:0005089 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0017016 GO:0017048 GO:0019899 GO:0021700 GO:0022622 GO:0030154 GO:0031267 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0051020 GO:0065007 GO:0065009 GO:0071695 GO:0080147 GO:0090558 GO:0090627 GO:0098772 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04962 map04962

Pfam Domains

Protein Families

Dynein_light PRONE

Protein Analysis

425

Amino Acids

48.9

Weight (kDa)

6.15

Isoelectric Point (pI)

54.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRONE	PF03759	20 - 330	1.4e-140	PRONE (Plant-specific Rop nucleotide exchanger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010910)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19560 AT5G19560 AT5G19560 AT5G19560 AT5G19560
fragaria_vesca	FvH4_1g04400
malus_domestica	MD02G1043700.v1.1 MD15G1182200.v1.1
prunus_persica	Prupe.7G233200_v2.0.a1
pyrus_communis	pycom15g16460
rosa_chinensis	RchiOBHm_Chr2g0090051
rosa_laevigata	RLG00000016081
rosa_multiflora	Rmu_sc0000226.1_g000006
rosa_roxburghii	Rroxscaffold_2G00151440
rosa_rugosa	Rorug02G0005000
rosa_samantha	Rh2AG050600 Rh2BG049200 Rh2CG051400 Rh2DG050800
rosa_wichuraiana	Rw2G004000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1155
AccI	GTMKAC	1 cut(s)	672
AccII	CGCG	1 cut(s)	988
AclWI	GGATC	3 cut(s)	243, 695, 1034
AcoI	YGGCCR	1 cut(s)	286
AcsI	RAATTY	4 cut(s)	173, 629, 837, 867
AcyI	GRCGYC	1 cut(s)	273
AdeI	CACNNNGTG	2 cut(s)	169, 667
AfaI	GTAC	4 cut(s)	480, 513, 531, 1060
AfiI	CCNNNNNNNGG	2 cut(s)	419, 563
AgsI	TTSAA	6 cut(s)	548, 788, 872, 915, 940, 1077
AjnI	CCWGG	2 cut(s)	832, 900
AloI	GAACNNNNNNTCC	2 cut(s)	1057, 1089
AluBI	AGCT	8 cut(s)	268, 572, 576, 909, 930, 1149, 1234, 1268
AluI	AGCT	8 cut(s)	268, 572, 576, 909, 930, 1149, 1234, 1268
Alw21I	GWGCWC	2 cut(s)	615, 663
Alw26I	GTCTC	3 cut(s)	108, 794, 1112
AlwI	GGATC	3 cut(s)	243, 695, 1034
Ama87I	CYCGRG	1 cut(s)	1235
AoxI	GGCC	2 cut(s)	286, 693
ApeKI	GCWGC	3 cut(s)	62, 448, 488
ApoI	RAATTY	4 cut(s)	173, 629, 837, 867
Asp700I	GAANNNNTTC	2 cut(s)	552, 742
AsuC2I	CCSGG	1 cut(s)	18
AsuHPI	GGTGA	3 cut(s)	139, 593, 772
AsuNHI	GCTAGC	1 cut(s)	572
AvaI	CYCGRG	1 cut(s)	1235
BalI	TGGCCA	1 cut(s)	288
BanII	GRGCYC	1 cut(s)	99
BbsI	GAAGAC	2 cut(s)	735, 1167
Bbv12I	GWGCWC	2 cut(s)	615, 663
BbvI	GCAGC	3 cut(s)	74, 435, 500
BccI	CCATC	4 cut(s)	117, 421, 728, 1095
BciT130I	CCWGG	2 cut(s)	834, 902
BclI	TGATCA	2 cut(s)	160, 1168
BcnI	CCSGG	1 cut(s)	18
BcoDI	GTCTC	3 cut(s)	108, 794, 1112
BfaI	CTAG	5 cut(s)	92, 368, 573, 626, 1112
BfmI	CTRYAG	1 cut(s)	449
BisI	GCNGC	3 cut(s)	63, 449, 489
BlsI	GCNGC	3 cut(s)	64, 450, 490
BmcAI	AGTACT	2 cut(s)	480, 513
Bme1390I	CCNGG	3 cut(s)	18, 834, 902
BmeT110I	CYCGRG	1 cut(s)	1235
BmrFI	CCNGG	3 cut(s)	18, 834, 902
BmsI	GCATC	2 cut(s)	74, 328
BmtI	GCTAGC	1 cut(s)	576
BpiI	GAAGAC	2 cut(s)	735, 1167
BpmI	CTGGAG	1 cut(s)	923
Bpu10I	CCTNAGC	1 cut(s)	5
BpuEI	CTTGAG	3 cut(s)	314, 492, 713
BpuMI	CCSGG	1 cut(s)	18
BsaHI	GRCGYC	1 cut(s)	273
BsaI	GGTCTC	2 cut(s)	794, 1112
BsaJI	CCNNGG	2 cut(s)	283, 832
Bsc4I	CCNNNNNNNGG	2 cut(s)	419, 563
Bse3DI	GCAATG	1 cut(s)	498
BseBI	CCWGG	2 cut(s)	834, 902
BseDI	CCNNGG	2 cut(s)	283, 832
BseGI	GGATG	6 cut(s)	65, 436, 532, 739, 889, 1106
BseLI	CCNNNNNNNGG	2 cut(s)	419, 563
BseMI	GCAATG	1 cut(s)	498
BseMII	CTCAG	4 cut(s)	19, 525, 669, 1047
BseRI	GAGGAG	2 cut(s)	623, 1130
BseXI	GCAGC	3 cut(s)	74, 435, 500
BsgI	GTGCAG	2 cut(s)	224, 834
Bsh1236I	CGCG	1 cut(s)	988
BshFI	GGCC	2 cut(s)	288, 695
BsiHKAI	GWGCWC	2 cut(s)	615, 663
BsiHKCI	CYCGRG	1 cut(s)	1235
BsiSI	CCGG	1 cut(s)	17
BslFI	GGGAC	3 cut(s)	164, 395, 1078
BslI	CCNNNNNNNGG	2 cut(s)	419, 563
BsmAI	GTCTC	3 cut(s)	108, 794, 1112
BsmFI	GGGAC	3 cut(s)	164, 395, 1078
BsnI	GGCC	2 cut(s)	288, 695
Bso31I	GGTCTC	2 cut(s)	794, 1112
BsoBI	CYCGRG	1 cut(s)	1235
Bsp1286I	GDGCHC	3 cut(s)	99, 615, 663
Bsp1407I	TGTACA	1 cut(s)	1058
Bsp143I	GATC	5 cut(s)	160, 235, 687, 1039, 1168
BspANI	GGCC	2 cut(s)	288, 695
BspCNI	CTCAG	4 cut(s)	18, 526, 668, 1046
BspFNI	CGCG	1 cut(s)	988
BspMAI	CTGCAG	1 cut(s)	453
BspOI	GCTAGC	1 cut(s)	576
BspPI	GGATC	3 cut(s)	243, 695, 1034
BspTNI	GGTCTC	2 cut(s)	794, 1112
BsrDI	GCAATG	1 cut(s)	498
BsrGI	TGTACA	1 cut(s)	1058
BssECI	CCNNGG	2 cut(s)	283, 832
BssMI	GATC	5 cut(s)	160, 235, 687, 1039, 1168
BssNI	GRCGYC	1 cut(s)	273
BssT1I	CCWWGG	1 cut(s)	283
Bst2UI	CCWGG	2 cut(s)	834, 902
Bst4CI	ACNGT	3 cut(s)	403, 805, 1166
Bst6I	CTCTTC	4 cut(s)	707, 767, 783, 1205
BstACI	GRCGYC	1 cut(s)	273
BstAPI	GCANNNNNTGC	1 cut(s)	503
BstAUI	TGTACA	1 cut(s)	1058
BstC8I	GCNNGC	4 cut(s)	143, 266, 574, 1270
BstDEI	CTNAG	5 cut(s)	5, 534, 655, 1033, 1253
BstEII	GGTNACC	1 cut(s)	393
BstF5I	GGATG	6 cut(s)	65, 436, 532, 739, 889, 1106
BstFNI	CGCG	1 cut(s)	988
BstKTI	GATC	5 cut(s)	163, 238, 690, 1042, 1171
BstMAI	GTCTC	3 cut(s)	108, 794, 1112
BstMBI	GATC	5 cut(s)	160, 235, 687, 1039, 1168
BstMWI	GCNNNNNNNGC	2 cut(s)	494, 503
BstNI	CCWGG	2 cut(s)	834, 902
BstPI	GGTNACC	1 cut(s)	393
BstSCI	CCNGG	3 cut(s)	16, 832, 900
BstSFI	CTRYAG	1 cut(s)	449
BstUI	CGCG	1 cut(s)	988
BstV1I	GCAGC	3 cut(s)	74, 435, 500
BstV2I	GAAGAC	2 cut(s)	735, 1167
BstX2I	RGATCY	2 cut(s)	235, 1039
BstYI	RGATCY	2 cut(s)	235, 1039
BsuRI	GGCC	2 cut(s)	288, 695
BtsCI	GGATG	6 cut(s)	65, 436, 532, 739, 889, 1106
BtsIMutI	CAGTG	2 cut(s)	1023, 1171
Cac8I	GCNNGC	4 cut(s)	143, 266, 574, 1270
CseI	GACGC	2 cut(s)	281, 994
Csp6I	GTAC	4 cut(s)	479, 512, 530, 1059
CviAII	CATG	7 cut(s)	100, 205, 277, 643, 747, 946, 1096
CviQI	GTAC	4 cut(s)	479, 512, 530, 1059
DdeI	CTNAG	5 cut(s)	5, 534, 655, 1033, 1253
DpnI	GATC	5 cut(s)	162, 237, 689, 1041, 1170
DpnII	GATC	5 cut(s)	160, 235, 687, 1039, 1168
DraIII	CACNNNGTG	2 cut(s)	169, 667
EaeI	YGGCCR	1 cut(s)	286
Eam1104I	CTCTTC	4 cut(s)	707, 767, 783, 1205
EarI	CTCTTC	4 cut(s)	707, 767, 783, 1205
Eco130I	CCWWGG	1 cut(s)	283
Eco147I	AGGCCT	1 cut(s)	695
Eco24I	GRGCYC	1 cut(s)	99
Eco31I	GGTCTC	2 cut(s)	794, 1112
Eco88I	CYCGRG	1 cut(s)	1235
Eco91I	GGTNACC	1 cut(s)	393
EcoO65I	GGTNACC	1 cut(s)	393
EcoRI	GAATTC	2 cut(s)	629, 837
EcoRII	CCWGG	2 cut(s)	832, 900
EcoT14I	CCWWGG	1 cut(s)	283
EcoT38I	GRGCYC	1 cut(s)	99
ErhI	CCWWGG	1 cut(s)	283
FaeI	CATG	7 cut(s)	103, 208, 280, 646, 750, 949, 1099
FalI	AAGNNNNNCTT	2 cut(s)	919, 951
FaqI	GGGAC	3 cut(s)	164, 395, 1078
FatI	CATG	7 cut(s)	99, 204, 276, 642, 746, 945, 1095
FauNDI	CATATG	1 cut(s)	1027
FbaI	TGATCA	2 cut(s)	160, 1168
FblI	GTMKAC	1 cut(s)	672
Fnu4HI	GCNGC	3 cut(s)	63, 449, 489
FokI	GGATG	6 cut(s)	52, 443, 539, 746, 896, 1113
FriOI	GRGCYC	1 cut(s)	99
Fsp4HI	GCNGC	3 cut(s)	63, 449, 489
FspBI	CTAG	5 cut(s)	92, 368, 573, 626, 1112
GluI	GCNGC	3 cut(s)	63, 449, 489
GsuI	CTGGAG	1 cut(s)	923
HaeIII	GGCC	2 cut(s)	288, 695
HapII	CCGG	1 cut(s)	17
HgaI	GACGC	2 cut(s)	281, 994
Hin1I	GRCGYC	1 cut(s)	273
Hin1II	CATG	7 cut(s)	103, 208, 280, 646, 750, 949, 1099
HindIII	AAGCTT	1 cut(s)	928
HinfI	GANTC	5 cut(s)	220, 464, 548, 1022, 1105
HpaII	CCGG	1 cut(s)	17
HphI	GGTGA	3 cut(s)	139, 593, 772
Hpy166II	GTNNAC	2 cut(s)	472, 673
Hpy188I	TCNGA	6 cut(s)	418, 430, 459, 520, 658, 1036
Hpy188III	TCNNGA	6 cut(s)	7, 107, 626, 769, 1043, 1237
Hpy8I	GTNNAC	2 cut(s)	472, 673
Hpy99I	CGWCG	1 cut(s)	275
HpyAV	CCTTC	5 cut(s)	192, 226, 413, 454, 563
HpyCH4III	ACNGT	3 cut(s)	403, 805, 1166
HpyCH4V	TGCA	5 cut(s)	62, 241, 305, 451, 851
HpyF10VI	GCNNNNNNNGC	2 cut(s)	494, 503
HpyF3I	CTNAG	5 cut(s)	5, 534, 655, 1033, 1253
Hsp92I	GRCGYC	1 cut(s)	273
Hsp92II	CATG	7 cut(s)	103, 208, 280, 646, 750, 949, 1099
Ksp22I	TGATCA	2 cut(s)	160, 1168
Kzo9I	GATC	5 cut(s)	160, 235, 687, 1039, 1168
LmnI	GCTCC	2 cut(s)	285, 610
Lsp1109I	GCAGC	3 cut(s)	74, 435, 500
LweI	GCATC	2 cut(s)	74, 328
MaeI	CTAG	5 cut(s)	92, 368, 573, 626, 1112
MaeIII	GTNAC	2 cut(s)	154, 393
MalI	GATC	5 cut(s)	162, 237, 689, 1041, 1170
MboI	GATC	5 cut(s)	160, 235, 687, 1039, 1168
MboII	GAAGA	8 cut(s)	724, 730, 735, 784, 800, 1049, 1172, 1222
MflI	RGATCY	2 cut(s)	235, 1039
MhlI	GDGCHC	3 cut(s)	99, 615, 663
MlsI	TGGCCA	1 cut(s)	288
MluCI	AATT	4 cut(s)	173, 629, 837, 867
MluNI	TGGCCA	1 cut(s)	288
MlyI	GAGTC	1 cut(s)	214
Mox20I	TGGCCA	1 cut(s)	288
MroXI	GAANNNNTTC	2 cut(s)	552, 742
MscI	TGGCCA	1 cut(s)	288
MseI	TTAA	1 cut(s)	246
MslI	CAYNNNNRTG	1 cut(s)	950
Msp20I	TGGCCA	1 cut(s)	288
MspI	CCGG	1 cut(s)	17
MspR9I	CCNGG	3 cut(s)	18, 834, 902
MvaI	CCWGG	2 cut(s)	834, 902
MvnI	CGCG	1 cut(s)	988
MwoI	GCNNNNNNNGC	2 cut(s)	494, 503
NciI	CCSGG	1 cut(s)	18
NdeI	CATATG	1 cut(s)	1027
NdeII	GATC	5 cut(s)	160, 235, 687, 1039, 1168
NheI	GCTAGC	1 cut(s)	572
NlaIII	CATG	7 cut(s)	103, 208, 280, 646, 750, 949, 1099
NmuCI	GTSAC	1 cut(s)	154
PaeR7I	CTCGAG	1 cut(s)	1235
PceI	AGGCCT	1 cut(s)	695
PdmI	GAANNNNTTC	2 cut(s)	552, 742
PfeI	GAWTC	4 cut(s)	464, 548, 1022, 1105
PfoI	TCCNGGA	1 cut(s)	900
PkrI	GCNGC	3 cut(s)	64, 450, 490
PleI	GAGTC	1 cut(s)	214
PpsI	GAGTC	1 cut(s)	214
PsiI	TTATAA	1 cut(s)	1155
Psp6I	CCWGG	2 cut(s)	832, 900
PspEI	GGTNACC	1 cut(s)	393
PspGI	CCWGG	2 cut(s)	832, 900
PstI	CTGCAG	1 cut(s)	453
PsuI	RGATCY	2 cut(s)	235, 1039
RsaI	GTAC	4 cut(s)	480, 513, 531, 1060
RsaNI	GTAC	4 cut(s)	479, 512, 530, 1059
RseI	CAYNNNNRTG	1 cut(s)	950
SaqAI	TTAA	1 cut(s)	246
SatI	GCNGC	3 cut(s)	63, 449, 489
Sau3AI	GATC	5 cut(s)	160, 235, 687, 1039, 1168
ScaI	AGTACT	2 cut(s)	480, 513
SchI	GAGTC	1 cut(s)	214
ScrFI	CCNGG	3 cut(s)	18, 834, 902
SduI	GDGCHC	3 cut(s)	99, 615, 663
SfaNI	GCATC	2 cut(s)	74, 328
SfcI	CTRYAG	1 cut(s)	449
Sfr274I	CTCGAG	1 cut(s)	1235
SlaI	CTCGAG	1 cut(s)	1235
SmiMI	CAYNNNNRTG	1 cut(s)	950
SmlI	CTYRAG	4 cut(s)	293, 507, 728, 1235
SmoI	CTYRAG	4 cut(s)	293, 507, 728, 1235
Sse9I	AATT	4 cut(s)	173, 629, 837, 867
SseBI	AGGCCT	1 cut(s)	695
SspMI	CTAG	5 cut(s)	92, 368, 573, 626, 1112
StuI	AGGCCT	1 cut(s)	695
StyD4I	CCNGG	3 cut(s)	16, 832, 900
StyI	CCWWGG	1 cut(s)	283
TaaI	ACNGT	3 cut(s)	403, 805, 1166
TaqI	TCGA	6 cut(s)	270, 439, 690, 768, 950, 1236
TaqII	GACCGA	1 cut(s)	1136
TasI	AATT	4 cut(s)	173, 629, 837, 867
TatI	WGTACW	3 cut(s)	478, 511, 1058
TfiI	GAWTC	4 cut(s)	464, 548, 1022, 1105
Tru1I	TTAA	1 cut(s)	246
Tru9I	TTAA	1 cut(s)	246
TscAI	CASTG	2 cut(s)	1023, 1171
TseFI	GTSAC	1 cut(s)	154
TseI	GCWGC	3 cut(s)	62, 448, 488
Tsp45I	GTSAC	1 cut(s)	154
TspDTI	ATGAA	5 cut(s)	396, 735, 737, 1014, 1084
TspGWI	ACGGA	3 cut(s)	58, 142, 1007
TspRI	CASTG	2 cut(s)	1023, 1171
XapI	RAATTY	4 cut(s)	173, 629, 837, 867
XbaI	TCTAGA	1 cut(s)	625
XcmI	CCANNNNNNNNNTGG	1 cut(s)	318
XhoI	CTCGAG	1 cut(s)	1235
XmiI	GTMKAC	1 cut(s)	672
XmnI	GAANNNNTTC	2 cut(s)	552, 742
XspI	CTAG	5 cut(s)	92, 368, 573, 626, 1112
ZrmI	AGTACT	2 cut(s)	480, 513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.