Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0010910

Physical Location & Seq

Genomic Coordinates Reverse (-)

3635695 .. 3638653

Gene Structure 2959 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG050800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGGTCCGAGCTTTTGCTACTCAAAAAACAATGCAGAAGACGAAATCTTTCCAATTGAAACGGATGTTCGAGTTCCAAGCTGGGAGAAATCTACCGGGTTTGATCTTCGACCACGATGTGAATGAGGATGAACAATTATTAAGTCCTGCTGCAGAAGAGCCCCCATTGGAGATCAAGCACCAAACTAAGTCACTTGAAGCCGAAAAGATACCAAGTCCTAAATGGTTGCCTTCAGATATGGAATTGATGAAGGAAAGGTTTTCGAAGCTGCTTTTGGGTGAAGACATGTCAGGTGGTGGAAAGGGTGTCTCTTCAGCCTTGGCTTTATCAAATGCCATAACAAATCTAGCAGCATCCGTTTTTGGAGAAACAAGAAAACTAGAGCCCATGTCTCCTGATAGGAAAGCGAGATGGGTGAAAGAGATTGGCTGGCTTCTGTCCGTGACTGATCACATTGTGGAATTTGTCCCTTCACAACAAAATGGAACAAACATGGAGATAATGATGACTCAACAAAGGAAGGATCTGCACATTAACATTCCTGCCCTACGCAAGCTCGACGCCATGCTCCTTGGCCACCTTGAGAGTTTTGCAAACCCAAGTGAGTTCTGGTATGTGAAAAGAGATGCCCAAGATGATGAGAAAGGTAGCAAACCAGAGAGAAATGATGAAAAATGGTGGTTACCAACTGTCAAAGTCCCATCAGAAGGTCTATCGGATGAGTGTCGAAAATGGCTGCAGTTTCAGAAGGATTCTGTCCACCAAGTACTAAAAGCAGCAATGGCAATCAATGCTCAAGTACTATCAGAAATGGATGTACCTGAGAACTATATTGAATCCCTTCCCAAGAATGGTAGAGCTAGCTTGGGTGATACAATCTACAAGAGCATAACAGAGGAGCACTTTGACCCTCTAGAATTCCTAACGAGCATGGACTTGTCCTCAGAGCACAAAGTGGTAGACCTGAAAGACAGGATCGAGGCCTCCATTGTGATTTGGAAGAGGAAGATGAACCTCAAGGATGGAAAGTCTTCATGGAGTTCTGGGGTGAGTTTCGAGAAAAGGGAACGATTTGAAGAGAGAGTAGAGACCGTCTTACTCCTAATCAAACAGAAGTTCCCAGGAATTCCCCAATCTGCACTTGACATAAGTAAAATTCAATACAATAAGGTAAGCAAAGAAAATATGTTCCCTTATCATATACATATTCATAGGATGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005085 GO:0005088 GO:0005089 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0017016 GO:0017048 GO:0019899 GO:0021700 GO:0022622 GO:0030154 GO:0031267 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0051020 GO:0065007 GO:0065009 GO:0071695 GO:0080147 GO:0090558 GO:0090627 GO:0098772 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04962 map04962

Pfam Domains

Protein Families

Dynein_light PRONE

Protein Analysis

407

Amino Acids

46.71

Weight (kDa)

6.63

Isoelectric Point (pI)

50.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRONE	PF03759	78 - 390	1.1e-145	PRONE (Plant-specific Rop nucleotide exchanger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010910)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19560 AT5G19560 AT5G19560 AT5G19560 AT5G19560
fragaria_vesca	FvH4_1g04400
malus_domestica	MD02G1043700.v1.1 MD15G1182200.v1.1
prunus_persica	Prupe.7G233200_v2.0.a1
pyrus_communis	pycom15g16460
rosa_chinensis	RchiOBHm_Chr2g0090051
rosa_laevigata	RLG00000016081
rosa_multiflora	Rmu_sc0000226.1_g000006
rosa_roxburghii	Rroxscaffold_2G00151440
rosa_rugosa	Rorug02G0005000
rosa_samantha	Rh2AG050600 Rh2BG049200 Rh2CG051400 Rh2DG050800
rosa_wichuraiana	Rw2G004000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	960
AclWI	GGATC	2 cut(s)	531, 983
AcoI	YGGCCR	1 cut(s)	574
AcsI	RAATTY	4 cut(s)	461, 917, 1125, 1155
AcuI	CTGAAG	2 cut(s)	216, 297
AcyI	GRCGYC	1 cut(s)	561
AdeI	CACNNNGTG	3 cut(s)	118, 457, 955
AfaI	GTAC	3 cut(s)	768, 801, 819
AfiI	CCNNNNNNNGG	2 cut(s)	707, 851
AflIII	ACRYGT	1 cut(s)	285
AgsI	TTSAA	5 cut(s)	58, 197, 836, 1076, 1160
AjnI	CCWGG	1 cut(s)	1120
AjuI	GAANNNNNNNTTGG	2 cut(s)	257, 289
AluBI	AGCT	6 cut(s)	11, 80, 268, 556, 860, 864
AluI	AGCT	6 cut(s)	11, 80, 268, 556, 860, 864
Alw21I	GWGCWC	2 cut(s)	903, 951
Alw26I	GTCTC	3 cut(s)	313, 396, 1082
AlwI	GGATC	2 cut(s)	531, 983
AoxI	GGCC	2 cut(s)	574, 981
ApeKI	GCWGC	5 cut(s)	149, 268, 350, 736, 776
ApoI	RAATTY	4 cut(s)	461, 917, 1125, 1155
Asp700I	GAANNNNTTC	3 cut(s)	47, 840, 1030
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	1 cut(s)	96
AsuHPI	GGTGA	4 cut(s)	290, 427, 881, 1060
AsuII	TTCGAA	1 cut(s)	263
AsuNHI	GCTAGC	1 cut(s)	860
AvaII	GGWCC	1 cut(s)	4
BalI	TGGCCA	1 cut(s)	576
BanII	GRGCYC	2 cut(s)	162, 387
BbsI	GAAGAC	3 cut(s)	44, 288, 1023
Bbv12I	GWGCWC	2 cut(s)	903, 951
BbvI	GCAGC	5 cut(s)	136, 255, 362, 723, 788
BccI	CCATC	3 cut(s)	405, 709, 1016
BciT130I	CCWGG	1 cut(s)	1122
BclI	TGATCA	1 cut(s)	448
BcnI	CCSGG	1 cut(s)	96
BcoDI	GTCTC	3 cut(s)	313, 396, 1082
BfaI	CTAG	4 cut(s)	347, 380, 861, 914
BfmI	CTRYAG	2 cut(s)	150, 737
BisI	GCNGC	5 cut(s)	150, 269, 351, 737, 777
BlsI	GCNGC	5 cut(s)	151, 270, 352, 738, 778
BmcAI	AGTACT	2 cut(s)	768, 801
Bme1390I	CCNGG	2 cut(s)	96, 1122
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmrFI	CCNGG	2 cut(s)	96, 1122
BmsI	GCATC	2 cut(s)	362, 616
BmtI	GCTAGC	1 cut(s)	864
BpiI	GAAGAC	3 cut(s)	44, 288, 1023
Bpu14I	TTCGAA	1 cut(s)	263
BpuEI	CTTGAG	3 cut(s)	602, 780, 1001
BpuMI	CCSGG	1 cut(s)	96
BsaHI	GRCGYC	1 cut(s)	561
BsaI	GGTCTC	1 cut(s)	1082
BsaJI	CCNNGG	3 cut(s)	318, 571, 1120
Bsc4I	CCNNNNNNNGG	2 cut(s)	707, 851
Bse3DI	GCAATG	1 cut(s)	786
BseBI	CCWGG	1 cut(s)	1122
BseDI	CCNNGG	3 cut(s)	318, 571, 1120
BseGI	GGATG	7 cut(s)	69, 133, 353, 724, 820, 1027, 1221
BseLI	CCNNNNNNNGG	2 cut(s)	707, 851
BseMI	GCAATG	1 cut(s)	786
BseMII	CTCAG	2 cut(s)	813, 957
BseRI	GAGGAG	1 cut(s)	911
BseXI	GCAGC	5 cut(s)	136, 255, 362, 723, 788
BseYI	CCCAGC	1 cut(s)	80
BsgI	GTGCAG	2 cut(s)	512, 1122
BshFI	GGCC	2 cut(s)	576, 983
BsiHKAI	GWGCWC	2 cut(s)	903, 951
BsiSI	CCGG	1 cut(s)	95
BslFI	GGGAC	2 cut(s)	452, 683
BslI	CCNNNNNNNGG	2 cut(s)	707, 851
BsmAI	GTCTC	3 cut(s)	313, 396, 1082
BsmFI	GGGAC	2 cut(s)	452, 683
BsnI	GGCC	2 cut(s)	576, 983
Bso31I	GGTCTC	1 cut(s)	1082
Bsp119I	TTCGAA	1 cut(s)	263
Bsp1286I	GDGCHC	4 cut(s)	162, 387, 903, 951
Bsp143I	GATC	5 cut(s)	102, 171, 448, 523, 975
BspANI	GGCC	2 cut(s)	576, 983
BspCNI	CTCAG	2 cut(s)	814, 956
BspMAI	CTGCAG	2 cut(s)	154, 741
BspOI	GCTAGC	1 cut(s)	864
BspPI	GGATC	2 cut(s)	531, 983
BspQI	GCTCTTC	1 cut(s)	150
BspT104I	TTCGAA	1 cut(s)	263
BspTNI	GGTCTC	1 cut(s)	1082
BsrDI	GCAATG	1 cut(s)	786
BssECI	CCNNGG	3 cut(s)	318, 571, 1120
BssMI	GATC	5 cut(s)	102, 171, 448, 523, 975
BssNI	GRCGYC	1 cut(s)	561
BssT1I	CCWWGG	2 cut(s)	318, 571
Bst2UI	CCWGG	1 cut(s)	1122
Bst4CI	ACNGT	2 cut(s)	691, 1093
Bst6I	CTCTTC	4 cut(s)	150, 316, 995, 1071
BstACI	GRCGYC	1 cut(s)	561
BstAPI	GCANNNNNTGC	1 cut(s)	791
BstBI	TTCGAA	1 cut(s)	263
BstC8I	GCNNGC	3 cut(s)	431, 554, 862
BstDEI	CTNAG	3 cut(s)	186, 822, 943
BstEII	GGTNACC	1 cut(s)	681
BstF5I	GGATG	7 cut(s)	69, 133, 353, 724, 820, 1027, 1221
BstKTI	GATC	5 cut(s)	105, 174, 451, 526, 978
BstMAI	GTCTC	3 cut(s)	313, 396, 1082
BstMBI	GATC	5 cut(s)	102, 171, 448, 523, 975
BstMWI	GCNNNNNNNGC	2 cut(s)	782, 791
BstNI	CCWGG	1 cut(s)	1122
BstNSI	RCATGY	1 cut(s)	289
BstPI	GGTNACC	1 cut(s)	681
BstSCI	CCNGG	2 cut(s)	94, 1120
BstSFI	CTRYAG	2 cut(s)	150, 737
BstV1I	GCAGC	5 cut(s)	136, 255, 362, 723, 788
BstV2I	GAAGAC	3 cut(s)	44, 288, 1023
BstX2I	RGATCY	1 cut(s)	523
BstYI	RGATCY	1 cut(s)	523
BsuRI	GGCC	2 cut(s)	576, 983
BtsCI	GGATG	7 cut(s)	69, 133, 353, 724, 820, 1027, 1221
Cac8I	GCNNGC	3 cut(s)	431, 554, 862
Cfr13I	GGNCC	1 cut(s)	4
CseI	GACGC	1 cut(s)	569
Csp6I	GTAC	3 cut(s)	767, 800, 818
CviAII	CATG	6 cut(s)	286, 388, 493, 565, 931, 1035
CviQI	GTAC	3 cut(s)	767, 800, 818
DdeI	CTNAG	3 cut(s)	186, 822, 943
DpnI	GATC	5 cut(s)	104, 173, 450, 525, 977
DpnII	GATC	5 cut(s)	102, 171, 448, 523, 975
DraIII	CACNNNGTG	3 cut(s)	118, 457, 955
EaeI	YGGCCR	1 cut(s)	574
Eam1104I	CTCTTC	4 cut(s)	150, 316, 995, 1071
EarI	CTCTTC	4 cut(s)	150, 316, 995, 1071
Eco130I	CCWWGG	2 cut(s)	318, 571
Eco147I	AGGCCT	1 cut(s)	983
Eco24I	GRGCYC	2 cut(s)	162, 387
Eco31I	GGTCTC	1 cut(s)	1082
Eco47I	GGWCC	1 cut(s)	4
Eco57I	CTGAAG	2 cut(s)	216, 297
Eco91I	GGTNACC	1 cut(s)	681
EcoO65I	GGTNACC	1 cut(s)	681
EcoRI	GAATTC	2 cut(s)	917, 1125
EcoRII	CCWGG	1 cut(s)	1120
EcoT14I	CCWWGG	2 cut(s)	318, 571
EcoT38I	GRGCYC	2 cut(s)	162, 387
ErhI	CCWWGG	2 cut(s)	318, 571
FaeI	CATG	6 cut(s)	289, 391, 496, 568, 934, 1038
FaqI	GGGAC	2 cut(s)	452, 683
FatI	CATG	6 cut(s)	285, 387, 492, 564, 930, 1034
FbaI	TGATCA	1 cut(s)	448
FblI	GTMKAC	1 cut(s)	960
Fnu4HI	GCNGC	5 cut(s)	150, 269, 351, 737, 777
FokI	GGATG	6 cut(s)	76, 140, 340, 731, 827, 1034
FriOI	GRGCYC	2 cut(s)	162, 387
Fsp4HI	GCNGC	5 cut(s)	150, 269, 351, 737, 777
FspBI	CTAG	4 cut(s)	347, 380, 861, 914
GluI	GCNGC	5 cut(s)	150, 269, 351, 737, 777
GsaI	CCCAGC	1 cut(s)	84
HaeIII	GGCC	2 cut(s)	576, 983
HapII	CCGG	1 cut(s)	95
HgaI	GACGC	1 cut(s)	569
Hin1I	GRCGYC	1 cut(s)	561
Hin1II	CATG	6 cut(s)	289, 391, 496, 568, 934, 1038
HinfI	GANTC	3 cut(s)	508, 752, 836
HpaII	CCGG	1 cut(s)	95
HphI	GGTGA	4 cut(s)	290, 427, 881, 1060
Hpy166II	GTNNAC	2 cut(s)	760, 961
Hpy188I	TCNGA	7 cut(s)	8, 235, 706, 718, 747, 808, 946
Hpy188III	TCNNGA	3 cut(s)	395, 914, 1057
Hpy8I	GTNNAC	2 cut(s)	760, 961
Hpy99I	CGWCG	1 cut(s)	563
HpyAV	CCTTC	7 cut(s)	240, 244, 480, 514, 701, 742, 851
HpyCH4III	ACNGT	2 cut(s)	691, 1093
HpyCH4V	TGCA	6 cut(s)	34, 152, 529, 593, 739, 1139
HpyF10VI	GCNNNNNNNGC	2 cut(s)	782, 791
HpyF3I	CTNAG	3 cut(s)	186, 822, 943
Hsp92I	GRCGYC	1 cut(s)	561
Hsp92II	CATG	6 cut(s)	289, 391, 496, 568, 934, 1038
Ksp22I	TGATCA	1 cut(s)	448
Kzo9I	GATC	5 cut(s)	102, 171, 448, 523, 975
LguI	GCTCTTC	1 cut(s)	150
LmnI	GCTCC	2 cut(s)	573, 898
Lsp1109I	GCAGC	5 cut(s)	136, 255, 362, 723, 788
LweI	GCATC	2 cut(s)	362, 616
MaeI	CTAG	4 cut(s)	347, 380, 861, 914
MaeIII	GTNAC	3 cut(s)	189, 442, 681
MalI	GATC	5 cut(s)	104, 173, 450, 525, 977
MboI	GATC	5 cut(s)	102, 171, 448, 523, 975
MboII	GAAGA	9 cut(s)	49, 97, 167, 293, 303, 1012, 1018, 1023, 1088
MfeI	CAATTG	1 cut(s)	53
MflI	RGATCY	1 cut(s)	523
MhlI	GDGCHC	4 cut(s)	162, 387, 903, 951
MlsI	TGGCCA	1 cut(s)	576
MluCI	AATT	7 cut(s)	53, 134, 242, 461, 917, 1125, 1155
MluNI	TGGCCA	1 cut(s)	576
MlyI	GAGTC	1 cut(s)	502
MnlI	CCTC	8 cut(s)	118, 889, 921, 952, 973, 994, 996, 1025
Mox20I	TGGCCA	1 cut(s)	576
MroXI	GAANNNNTTC	3 cut(s)	47, 840, 1030
MscI	TGGCCA	1 cut(s)	576
MseI	TTAA	2 cut(s)	140, 534
Msp20I	TGGCCA	1 cut(s)	576
MspI	CCGG	1 cut(s)	95
MspR9I	CCNGG	2 cut(s)	96, 1122
MunI	CAATTG	1 cut(s)	53
MvaI	CCWGG	1 cut(s)	1122
MwoI	GCNNNNNNNGC	2 cut(s)	782, 791
NciI	CCSGG	1 cut(s)	96
NdeII	GATC	5 cut(s)	102, 171, 448, 523, 975
NheI	GCTAGC	1 cut(s)	860
NlaIII	CATG	6 cut(s)	289, 391, 496, 568, 934, 1038
NmuCI	GTSAC	2 cut(s)	189, 442
NspI	RCATGY	1 cut(s)	289
NspV	TTCGAA	1 cut(s)	263
PceI	AGGCCT	1 cut(s)	983
PciI	ACATGT	1 cut(s)	285
PciSI	GCTCTTC	1 cut(s)	150
PdmI	GAANNNNTTC	3 cut(s)	47, 840, 1030
PfeI	GAWTC	2 cut(s)	752, 836
PkrI	GCNGC	5 cut(s)	151, 270, 352, 738, 778
PleI	GAGTC	1 cut(s)	502
PpsI	GAGTC	1 cut(s)	502
PscI	ACATGT	1 cut(s)	285
Psp6I	CCWGG	1 cut(s)	1120
PspEI	GGTNACC	1 cut(s)	681
PspFI	CCCAGC	1 cut(s)	80
PspGI	CCWGG	1 cut(s)	1120
PspPI	GGNCC	1 cut(s)	4
PstI	CTGCAG	2 cut(s)	154, 741
PsuI	RGATCY	1 cut(s)	523
RsaI	GTAC	3 cut(s)	768, 801, 819
RsaNI	GTAC	3 cut(s)	767, 800, 818
SapI	GCTCTTC	1 cut(s)	150
SaqAI	TTAA	2 cut(s)	140, 534
SatI	GCNGC	5 cut(s)	150, 269, 351, 737, 777
Sau3AI	GATC	5 cut(s)	102, 171, 448, 523, 975
Sau96I	GGNCC	1 cut(s)	4
ScaI	AGTACT	2 cut(s)	768, 801
SchI	GAGTC	1 cut(s)	502
ScrFI	CCNGG	2 cut(s)	96, 1122
SduI	GDGCHC	4 cut(s)	162, 387, 903, 951
SfaNI	GCATC	2 cut(s)	362, 616
SfcI	CTRYAG	2 cut(s)	150, 737
SfuI	TTCGAA	1 cut(s)	263
SinI	GGWCC	1 cut(s)	4
SmlI	CTYRAG	3 cut(s)	581, 795, 1016
SmoI	CTYRAG	3 cut(s)	581, 795, 1016
Sse9I	AATT	7 cut(s)	53, 134, 242, 461, 917, 1125, 1155
SseBI	AGGCCT	1 cut(s)	983
SspMI	CTAG	4 cut(s)	347, 380, 861, 914
StuI	AGGCCT	1 cut(s)	983
StyD4I	CCNGG	2 cut(s)	94, 1120
StyI	CCWWGG	2 cut(s)	318, 571
TaaI	ACNGT	2 cut(s)	691, 1093
TaqI	TCGA	7 cut(s)	69, 108, 263, 558, 727, 978, 1056
TasI	AATT	7 cut(s)	53, 134, 242, 461, 917, 1125, 1155
TatI	WGTACW	2 cut(s)	766, 799
TfiI	GAWTC	2 cut(s)	752, 836
Tru1I	TTAA	2 cut(s)	140, 534
Tru9I	TTAA	2 cut(s)	140, 534
TseFI	GTSAC	2 cut(s)	189, 442
TseI	GCWGC	5 cut(s)	149, 268, 350, 736, 776
Tsp45I	GTSAC	2 cut(s)	189, 442
TspDTI	ATGAA	6 cut(s)	144, 263, 684, 1023, 1025, 1199
TspGWI	ACGGA	3 cut(s)	76, 346, 430
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	4 cut(s)	461, 917, 1125, 1155
XbaI	TCTAGA	1 cut(s)	913
XceI	RCATGY	1 cut(s)	289
XcmI	CCANNNNNNNNNTGG	2 cut(s)	219, 606
XmiI	GTMKAC	1 cut(s)	960
XmnI	GAANNNNTTC	3 cut(s)	47, 840, 1030
XspI	CTAG	4 cut(s)	347, 380, 861, 914
ZrmI	AGTACT	2 cut(s)	768, 801

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.