Rmu_sc0000226.1_g000006

guanine nucleotide exchange factor

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000226.1
Physical Location & Seq
Forward (+)
19980 .. 22088
2109 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000226.1_g000006.1.cds

Sequence Viewer

Length: 1503 bp
atgttcgagttccaagctgggagaaatctaccgggtttgatcttcgaccacgatgtgaatgaggatgaacaattattaagtcctgctgcagaagagcccccattggagatcaagcaccaaactaagtcacttgaagccgaaaagataccaagtcctaaatggttgccttcagatatggaattgatgaaggaaaggttttcgaagctgcttttgggtgaagacatgtcaggtggtggaaagggtgtctcttcagccttggctttatcaaatgccataacaaatctagcagcatccgtttttggagaaacaagaaaactagagcccatgtctcctgataggaaagcgagatgggtgaaagagattggctggcttctgtccgtgactgatcacattgtggaatttgtcccttcacaacaaaatggaacaaacatggagataatgatgactcaacaaaggaaggatctgcacattaacattcctgccctacgcaagctcgacgccatgctccttggccaccttgagagttttgcaaacccaagtgagttctggtatgtgaaaagagatgcccaagatgatgagaaaggtagcaaaccagagagaaatgatgaaaaatggtggttaccaactgtcaaagtcccatcagaaggtctatcggatgagtgtcgaaaatggctgcagtttcagaaggattctgtccaccaagtactaaaagcagcaatggcaatcaatgctcaagtactatcagaaatggatgtacctgagaactatattgaatcccttcccaagaatggtagagctagcttgggtgatacaatctacaagagcataacagaggagcactttgaccctctagaattcctaacgagcatggacttgtcctcagagcacaaagtggtagacctgaaagacaggatcgaggcctccattgtgatttggaagaggaagatgaacctcaaggatggaaagtcttcatggagttctggggtgagtttcgagaagagggaacgatttgaagagagagtagagaccgtcttactcctaatcaaacagaagttcccaggaattccccaatctgcacttgacataagtaaaattcaatacaataaggatgtagggtatgctatcctggaaagctattcaagggtaatagaaagcttggctttcaatgtcatgtcgatgatagatgatgtcctttttgctgataaaaagatgcgaacggagaaatcaaacaggaggctttcagtggattcatatgcctcagaagatcctgacaggttgagttgtacagggacaccgagttcaaagacattgtttgagttcatgggatggaatcaactagaggagaccgatgtggataagaataacaaggagagctattataaagaagacagtgatcacaagattatgagcaaaccaccacttgctgtaagcacgaagaggttttcctatttagaaaagctcgagaagttgagtggtctaagaagtccaacagctcgccattga

Protein Analysis

500

Amino Acids

57.08

Weight (kDa)

5.53

Isoelectric Point (pI)

54.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0010910)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1380
AccI GTMKAC 1 cut(s) 897
AclWI GGATC 3 cut(s) 468, 920, 1259
AcoI YGGCCR 1 cut(s) 511
AcsI RAATTY 4 cut(s) 398, 854, 1062, 1092
AcuI CTGAAG 2 cut(s) 153, 234
AcyI GRCGYC 1 cut(s) 498
AdeI CACNNNGTG 3 cut(s) 55, 394, 892
AfaI GTAC 4 cut(s) 705, 738, 756, 1285
AfiI CCNNNNNNNGG 2 cut(s) 644, 788
AflIII ACRYGT 1 cut(s) 222
AgsI TTSAA 7 cut(s) 134, 773, 1013, 1097, 1140, 1165, 1302
AjnI CCWGG 2 cut(s) 1057, 1125
AjuI GAANNNNNNNTTGG 2 cut(s) 194, 226
AloI GAACNNNNNNTCC 2 cut(s) 1282, 1314
Alw21I GWGCWC 2 cut(s) 840, 888
Alw26I GTCTC 4 cut(s) 250, 333, 1019, 1337
AlwI GGATC 3 cut(s) 468, 920, 1259
Ama87I CYCGRG 1 cut(s) 1460
AoxI GGCC 2 cut(s) 511, 918
ApeKI GCWGC 5 cut(s) 86, 205, 287, 673, 713
ApoI RAATTY 4 cut(s) 398, 854, 1062, 1092
Asp700I GAANNNNTTC 2 cut(s) 777, 967
AsuC2I CCSGG 1 cut(s) 33
AsuHPI GGTGA 4 cut(s) 227, 364, 818, 997
AsuII TTCGAA 1 cut(s) 200
AsuNHI GCTAGC 1 cut(s) 797
AvaI CYCGRG 1 cut(s) 1460
BalI TGGCCA 1 cut(s) 513
BanII GRGCYC 2 cut(s) 99, 324
BbsI GAAGAC 3 cut(s) 225, 960, 1392
Bbv12I GWGCWC 2 cut(s) 840, 888
BbvI GCAGC 5 cut(s) 73, 192, 299, 660, 725
BccI CCATC 4 cut(s) 342, 646, 953, 1320
BciT130I CCWGG 2 cut(s) 1059, 1127
BclI TGATCA 2 cut(s) 385, 1393
BcnI CCSGG 1 cut(s) 33
BcoDI GTCTC 4 cut(s) 250, 333, 1019, 1337
BfaI CTAG 5 cut(s) 284, 317, 798, 851, 1337
BfmI CTRYAG 2 cut(s) 87, 674
BisI GCNGC 5 cut(s) 87, 206, 288, 674, 714
BlsI GCNGC 5 cut(s) 88, 207, 289, 675, 715
BmcAI AGTACT 2 cut(s) 705, 738
Bme1390I CCNGG 3 cut(s) 33, 1059, 1127
BmeT110I CYCGRG 1 cut(s) 1460
BmrFI CCNGG 3 cut(s) 33, 1059, 1127
BmsI GCATC 3 cut(s) 299, 553, 1200
BmtI GCTAGC 1 cut(s) 801
BpiI GAAGAC 3 cut(s) 225, 960, 1392
Bpu14I TTCGAA 1 cut(s) 200
BpuEI CTTGAG 3 cut(s) 539, 717, 938
BpuMI CCSGG 1 cut(s) 33
BsaHI GRCGYC 1 cut(s) 498
BsaI GGTCTC 2 cut(s) 1019, 1337
BsaJI CCNNGG 3 cut(s) 255, 508, 1057
Bsc4I CCNNNNNNNGG 2 cut(s) 644, 788
Bse3DI GCAATG 1 cut(s) 723
BseBI CCWGG 2 cut(s) 1059, 1127
BseDI CCNNGG 3 cut(s) 255, 508, 1057
BseGI GGATG 7 cut(s) 70, 290, 661, 757, 964, 1114, 1331
BseLI CCNNNNNNNGG 2 cut(s) 644, 788
BseMI GCAATG 1 cut(s) 723
BseMII CTCAG 3 cut(s) 750, 894, 1272
BseRI GAGGAG 2 cut(s) 848, 1355
BseXI GCAGC 5 cut(s) 73, 192, 299, 660, 725
BseYI CCCAGC 1 cut(s) 17
BsgI GTGCAG 2 cut(s) 449, 1059
BshFI GGCC 2 cut(s) 513, 920
BsiHKAI GWGCWC 2 cut(s) 840, 888
BsiHKCI CYCGRG 1 cut(s) 1460
BsiSI CCGG 1 cut(s) 32
BslFI GGGAC 3 cut(s) 389, 620, 1303
BslI CCNNNNNNNGG 2 cut(s) 644, 788
BsmAI GTCTC 4 cut(s) 250, 333, 1019, 1337
BsmFI GGGAC 3 cut(s) 389, 620, 1303
BsnI GGCC 2 cut(s) 513, 920
Bso31I GGTCTC 2 cut(s) 1019, 1337
BsoBI CYCGRG 1 cut(s) 1460
Bsp119I TTCGAA 1 cut(s) 200
Bsp1286I GDGCHC 4 cut(s) 99, 324, 840, 888
Bsp1407I TGTACA 1 cut(s) 1283
Bsp143I GATC 7 cut(s) 39, 108, 385, 460, 912, 1264, 1393
BspANI GGCC 2 cut(s) 513, 920
BspCNI CTCAG 3 cut(s) 751, 893, 1271
BspMAI CTGCAG 2 cut(s) 91, 678
BspOI GCTAGC 1 cut(s) 801
BspPI GGATC 3 cut(s) 468, 920, 1259
BspQI GCTCTTC 1 cut(s) 87
BspT104I TTCGAA 1 cut(s) 200
BspTNI GGTCTC 2 cut(s) 1019, 1337
BsrDI GCAATG 1 cut(s) 723
BsrGI TGTACA 1 cut(s) 1283
BssECI CCNNGG 3 cut(s) 255, 508, 1057
BssMI GATC 7 cut(s) 39, 108, 385, 460, 912, 1264, 1393
BssNI GRCGYC 1 cut(s) 498
BssT1I CCWWGG 2 cut(s) 255, 508
Bst2UI CCWGG 2 cut(s) 1059, 1127
Bst4CI ACNGT 3 cut(s) 628, 1030, 1391
Bst6I CTCTTC 6 cut(s) 87, 253, 932, 992, 1008, 1430
BstACI GRCGYC 1 cut(s) 498
BstAPI GCANNNNNTGC 1 cut(s) 728
BstAUI TGTACA 1 cut(s) 1283
BstBI TTCGAA 1 cut(s) 200
BstC8I GCNNGC 4 cut(s) 368, 491, 799, 1495
BstDEI CTNAG 5 cut(s) 123, 759, 880, 1258, 1478
BstEII GGTNACC 1 cut(s) 618
BstF5I GGATG 7 cut(s) 70, 290, 661, 757, 964, 1114, 1331
BstKTI GATC 7 cut(s) 42, 111, 388, 463, 915, 1267, 1396
BstMAI GTCTC 4 cut(s) 250, 333, 1019, 1337
BstMBI GATC 7 cut(s) 39, 108, 385, 460, 912, 1264, 1393
BstMWI GCNNNNNNNGC 2 cut(s) 719, 728
BstNI CCWGG 2 cut(s) 1059, 1127
BstNSI RCATGY 1 cut(s) 226
BstPI GGTNACC 1 cut(s) 618
BstSCI CCNGG 3 cut(s) 31, 1057, 1125
BstSFI CTRYAG 2 cut(s) 87, 674
BstV1I GCAGC 5 cut(s) 73, 192, 299, 660, 725
BstV2I GAAGAC 3 cut(s) 225, 960, 1392
BstX2I RGATCY 2 cut(s) 460, 1264
BstYI RGATCY 2 cut(s) 460, 1264
BsuRI GGCC 2 cut(s) 513, 920
BtsCI GGATG 7 cut(s) 70, 290, 661, 757, 964, 1114, 1331
BtsIMutI CAGTG 2 cut(s) 1248, 1396
Cac8I GCNNGC 4 cut(s) 368, 491, 799, 1495
CseI GACGC 1 cut(s) 506
Csp6I GTAC 4 cut(s) 704, 737, 755, 1284
CviAII CATG 8 cut(s) 223, 325, 430, 502, 868, 972, 1171, 1321
CviQI GTAC 4 cut(s) 704, 737, 755, 1284
DdeI CTNAG 5 cut(s) 123, 759, 880, 1258, 1478
DpnI GATC 7 cut(s) 41, 110, 387, 462, 914, 1266, 1395
DpnII GATC 7 cut(s) 39, 108, 385, 460, 912, 1264, 1393
DraIII CACNNNGTG 3 cut(s) 55, 394, 892
EaeI YGGCCR 1 cut(s) 511
Eam1104I CTCTTC 6 cut(s) 87, 253, 932, 992, 1008, 1430
EarI CTCTTC 6 cut(s) 87, 253, 932, 992, 1008, 1430
Eco130I CCWWGG 2 cut(s) 255, 508
Eco147I AGGCCT 1 cut(s) 920
Eco24I GRGCYC 2 cut(s) 99, 324
Eco31I GGTCTC 2 cut(s) 1019, 1337
Eco57I CTGAAG 2 cut(s) 153, 234
Eco88I CYCGRG 1 cut(s) 1460
Eco91I GGTNACC 1 cut(s) 618
EcoO65I GGTNACC 1 cut(s) 618
EcoRI GAATTC 2 cut(s) 854, 1062
EcoRII CCWGG 2 cut(s) 1057, 1125
EcoT14I CCWWGG 2 cut(s) 255, 508
EcoT38I GRGCYC 2 cut(s) 99, 324
ErhI CCWWGG 2 cut(s) 255, 508
FaeI CATG 8 cut(s) 226, 328, 433, 505, 871, 975, 1174, 1324
FalI AAGNNNNNCTT 2 cut(s) 1144, 1176
FaqI GGGAC 3 cut(s) 389, 620, 1303
FatI CATG 8 cut(s) 222, 324, 429, 501, 867, 971, 1170, 1320
FauNDI CATATG 1 cut(s) 1252
FbaI TGATCA 2 cut(s) 385, 1393
FblI GTMKAC 1 cut(s) 897
Fnu4HI GCNGC 5 cut(s) 87, 206, 288, 674, 714
FokI GGATG 7 cut(s) 77, 277, 668, 764, 971, 1121, 1338
FriOI GRGCYC 2 cut(s) 99, 324
Fsp4HI GCNGC 5 cut(s) 87, 206, 288, 674, 714
FspBI CTAG 5 cut(s) 284, 317, 798, 851, 1337
GluI GCNGC 5 cut(s) 87, 206, 288, 674, 714
GsaI CCCAGC 1 cut(s) 21
HaeIII GGCC 2 cut(s) 513, 920
HapII CCGG 1 cut(s) 32
HgaI GACGC 1 cut(s) 506
Hin1I GRCGYC 1 cut(s) 498
Hin1II CATG 8 cut(s) 226, 328, 433, 505, 871, 975, 1174, 1324
HindIII AAGCTT 1 cut(s) 1153
HinfI GANTC 5 cut(s) 445, 689, 773, 1247, 1330
HpaII CCGG 1 cut(s) 32
HphI GGTGA 4 cut(s) 227, 364, 818, 997
Hpy166II GTNNAC 2 cut(s) 697, 898
Hpy188I TCNGA 7 cut(s) 172, 643, 655, 684, 745, 883, 1261
Hpy188III TCNNGA 5 cut(s) 332, 851, 994, 1268, 1462
Hpy8I GTNNAC 2 cut(s) 697, 898
Hpy99I CGWCG 1 cut(s) 500
HpyAV CCTTC 7 cut(s) 177, 181, 417, 451, 638, 679, 788
HpyCH4III ACNGT 3 cut(s) 628, 1030, 1391
HpyCH4V TGCA 5 cut(s) 89, 466, 530, 676, 1076
HpyF10VI GCNNNNNNNGC 2 cut(s) 719, 728
HpyF3I CTNAG 5 cut(s) 123, 759, 880, 1258, 1478
Hsp92I GRCGYC 1 cut(s) 498
Hsp92II CATG 8 cut(s) 226, 328, 433, 505, 871, 975, 1174, 1324
Ksp22I TGATCA 2 cut(s) 385, 1393
Kzo9I GATC 7 cut(s) 39, 108, 385, 460, 912, 1264, 1393
LguI GCTCTTC 1 cut(s) 87
LmnI GCTCC 2 cut(s) 510, 835
Lsp1109I GCAGC 5 cut(s) 73, 192, 299, 660, 725
LweI GCATC 3 cut(s) 299, 553, 1200
MaeI CTAG 5 cut(s) 284, 317, 798, 851, 1337
MaeIII GTNAC 3 cut(s) 126, 379, 618
MalI GATC 7 cut(s) 41, 110, 387, 462, 914, 1266, 1395
MboI GATC 7 cut(s) 39, 108, 385, 460, 912, 1264, 1393
MflI RGATCY 2 cut(s) 460, 1264
MhlI GDGCHC 4 cut(s) 99, 324, 840, 888
MlsI TGGCCA 1 cut(s) 513
MluCI AATT 6 cut(s) 71, 179, 398, 854, 1062, 1092
MluNI TGGCCA 1 cut(s) 513
MlyI GAGTC 1 cut(s) 439
Mox20I TGGCCA 1 cut(s) 513
MroXI GAANNNNTTC 2 cut(s) 777, 967
MscI TGGCCA 1 cut(s) 513
MseI TTAA 2 cut(s) 77, 471
MslI CAYNNNNRTG 1 cut(s) 1175
Msp20I TGGCCA 1 cut(s) 513
MspI CCGG 1 cut(s) 32
MspR9I CCNGG 3 cut(s) 33, 1059, 1127
MvaI CCWGG 2 cut(s) 1059, 1127
MwoI GCNNNNNNNGC 2 cut(s) 719, 728
NciI CCSGG 1 cut(s) 33
NdeI CATATG 1 cut(s) 1252
NdeII GATC 7 cut(s) 39, 108, 385, 460, 912, 1264, 1393
NheI GCTAGC 1 cut(s) 797
NlaIII CATG 8 cut(s) 226, 328, 433, 505, 871, 975, 1174, 1324
NmuCI GTSAC 2 cut(s) 126, 379
NspI RCATGY 1 cut(s) 226
NspV TTCGAA 1 cut(s) 200
PaeR7I CTCGAG 1 cut(s) 1460
PceI AGGCCT 1 cut(s) 920
PciI ACATGT 1 cut(s) 222
PciSI GCTCTTC 1 cut(s) 87
PdmI GAANNNNTTC 2 cut(s) 777, 967
PfeI GAWTC 4 cut(s) 689, 773, 1247, 1330
PfoI TCCNGGA 1 cut(s) 1125
PkrI GCNGC 5 cut(s) 88, 207, 289, 675, 715
PleI GAGTC 1 cut(s) 439
PpsI GAGTC 1 cut(s) 439
PscI ACATGT 1 cut(s) 222
PsiI TTATAA 1 cut(s) 1380
Psp6I CCWGG 2 cut(s) 1057, 1125
PspEI GGTNACC 1 cut(s) 618
PspFI CCCAGC 1 cut(s) 17
PspGI CCWGG 2 cut(s) 1057, 1125
PstI CTGCAG 2 cut(s) 91, 678
PsuI RGATCY 2 cut(s) 460, 1264
RsaI GTAC 4 cut(s) 705, 738, 756, 1285
RsaNI GTAC 4 cut(s) 704, 737, 755, 1284
RseI CAYNNNNRTG 1 cut(s) 1175
SapI GCTCTTC 1 cut(s) 87
SaqAI TTAA 2 cut(s) 77, 471
SatI GCNGC 5 cut(s) 87, 206, 288, 674, 714
Sau3AI GATC 7 cut(s) 39, 108, 385, 460, 912, 1264, 1393
ScaI AGTACT 2 cut(s) 705, 738
SchI GAGTC 1 cut(s) 439
ScrFI CCNGG 3 cut(s) 33, 1059, 1127
SduI GDGCHC 4 cut(s) 99, 324, 840, 888
SfaNI GCATC 3 cut(s) 299, 553, 1200
SfcI CTRYAG 2 cut(s) 87, 674
Sfr274I CTCGAG 1 cut(s) 1460
SfuI TTCGAA 1 cut(s) 200
SlaI CTCGAG 1 cut(s) 1460
SmiMI CAYNNNNRTG 1 cut(s) 1175
SmlI CTYRAG 4 cut(s) 518, 732, 953, 1460
SmoI CTYRAG 4 cut(s) 518, 732, 953, 1460
Sse9I AATT 6 cut(s) 71, 179, 398, 854, 1062, 1092
SseBI AGGCCT 1 cut(s) 920
SspMI CTAG 5 cut(s) 284, 317, 798, 851, 1337
StuI AGGCCT 1 cut(s) 920
StyD4I CCNGG 3 cut(s) 31, 1057, 1125
StyI CCWWGG 2 cut(s) 255, 508
TaaI ACNGT 3 cut(s) 628, 1030, 1391
TaqI TCGA 9 cut(s) 6, 45, 200, 495, 664, 915, 993, 1175, 1461
TaqII GACCGA 1 cut(s) 1361
TasI AATT 6 cut(s) 71, 179, 398, 854, 1062, 1092
TatI WGTACW 3 cut(s) 703, 736, 1283
TfiI GAWTC 4 cut(s) 689, 773, 1247, 1330
Tru1I TTAA 2 cut(s) 77, 471
Tru9I TTAA 2 cut(s) 77, 471
TscAI CASTG 2 cut(s) 1248, 1396
TseFI GTSAC 2 cut(s) 126, 379
TseI GCWGC 5 cut(s) 86, 205, 287, 673, 713
Tsp45I GTSAC 2 cut(s) 126, 379
TspDTI ATGAA 7 cut(s) 81, 200, 621, 960, 962, 1239, 1309
TspGWI ACGGA 3 cut(s) 283, 367, 1232
TspRI CASTG 2 cut(s) 1248, 1396
XapI RAATTY 4 cut(s) 398, 854, 1062, 1092
XbaI TCTAGA 1 cut(s) 850
XceI RCATGY 1 cut(s) 226
XcmI CCANNNNNNNNNTGG 2 cut(s) 156, 543
XhoI CTCGAG 1 cut(s) 1460
XmiI GTMKAC 1 cut(s) 897
XmnI GAANNNNTTC 2 cut(s) 777, 967
XspI CTAG 5 cut(s) 284, 317, 798, 851, 1337
ZrmI AGTACT 2 cut(s) 705, 738
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.