Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007913

Physical Location & Seq

Genomic Coordinates Forward (+)

523253 .. 526064

Gene Structure 2812 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0005000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGGCAAGAATCAAGCTTACAAAGCTATGCAGAGAGCCAGGCTGGGATCCAGCTCCGCTGGCCCTGATGAGGTCGAAGACGGCATGGTGGATGGTTCATTTCATTCACCAGAGTGGCATGCTGCTCGTTTGGCCAGCCTTAAAACTTCTCATACAATTACCTGGGAGGAGTACAAAAAGAAGCAAAAGGAAGATGAACTGAGAAAAGGGGAACTGGAAAAAGATACCGATAGAATGATGAGAGAATACAGGGCTCAACTGGATGCCGAAAGGGCTCGCAAGCTTGCCAATGGAAGAAACCACTCTAGTGGCAAGTCTGATCGCAAAAAAGATAAGAAGGATAAAGATTTAAAGAAACGCAGCAGCAGCAGCAGAAAGAGAAAGCATTCAAGAAGGAGATCCTCAGAGTCTAGCTCCTCGACTTCATCGTCAGATTCTTCCAGTAGTGAAGAAGATGACAGAGAATCAAGAAGATCCAAGTCCAGGTCTAAGAGAACAAAAAAGGAAAAGAAGCACAGGTCAAGAACCAAGCACTCTAGCAGTGATGATGACGAGGCTGATGGCCCTGTTCCACTTTCCCGATTCTTTGGAAGTGTCAAGAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005085 GO:0005088 GO:0005089 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0017016 GO:0017048 GO:0019899 GO:0021700 GO:0022622 GO:0030154 GO:0031267 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0051020 GO:0065007 GO:0065009 GO:0071695 GO:0080147 GO:0090558 GO:0090627 GO:0098772 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04962 map04962

Pfam Domains

Protein Families

Dynein_light PRONE

Protein Analysis

201

Amino Acids

23.0

Weight (kDa)

10.07

Isoelectric Point (pI)

64.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007913)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24630 AT3G24630
malus_domestica	MD00G1028300.v1.1 MD02G1039400.v1.1 MD15G1182400.v1.1
prunus_persica	Prupe.7G233100_v2.0.a1 Prupe.7G233100_v2.0.a1 Prupe.7G233100_v2.0.a1 Prupe.7G233100_v2.0.a1 Prupe.7G233100_v2.0.a1 Prupe.7G233100_v2.0.a1
pyrus_communis	pycom02g03210 pycom02g05190 pycom02g05210 pycom15g16470
rosa_chinensis	RchiOBHm_Chr2g0090061
rosa_laevigata	RLG00000016082
rosa_roxburghii	Rroxscaffold_2G00151430
rosa_rugosa	Rorug02G0005000
rosa_samantha	Rh2AG050700 Rh2BG049300 Rh2CG051500 Rh2DG050900
rosa_wichuraiana	Rw2G003990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	427
AciI	CCGC	1 cut(s)	57
AclWI	GGATC	4 cut(s)	42, 55, 393, 468
AcoI	YGGCCR	1 cut(s)	132
AfaI	GTAC	1 cut(s)	173
AfiI	CCNNNNNNNGG	2 cut(s)	70, 483
AgsI	TTSAA	1 cut(s)	390
AjnI	CCWGG	3 cut(s)	38, 161, 482
AleI	CACNNNNGTG	2 cut(s)	112, 306
AluBI	AGCT	6 cut(s)	17, 26, 54, 283, 414, 603
AluI	AGCT	6 cut(s)	17, 26, 54, 283, 414, 603
AlwI	GGATC	4 cut(s)	42, 55, 393, 468
AoxI	GGCC	3 cut(s)	61, 132, 562
ApeKI	GCWGC	5 cut(s)	122, 360, 363, 366, 369
Asp700I	GAANNNNTTC	1 cut(s)	385
AspS9I	GGNCC	2 cut(s)	62, 563
AsuHPI	GGTGA	1 cut(s)	99
BalI	TGGCCA	1 cut(s)	134
BamHI	GGATCC	1 cut(s)	47
BanII	GRGCYC	2 cut(s)	256, 277
BbsI	GAAGAC	1 cut(s)	84
BbvI	GCAGC	5 cut(s)	109, 372, 375, 378, 381
BccI	CCATC	2 cut(s)	86, 554
BceAI	ACGGC	1 cut(s)	97
BcgI	CGANNNNNNTGC	2 cut(s)	107, 141
BciT130I	CCWGG	3 cut(s)	40, 163, 484
BfaI	CTAG	4 cut(s)	306, 411, 537, 604
BglI	GCCNNNNNGGC	1 cut(s)	272
BisI	GCNGC	5 cut(s)	123, 361, 364, 367, 370
BlsI	GCNGC	5 cut(s)	124, 362, 365, 368, 371
Bme1390I	CCNGG	3 cut(s)	40, 163, 484
BmgT120I	GGNCC	2 cut(s)	62, 563
BmiI	GGNNCC	1 cut(s)	49
BmrFI	CCNGG	3 cut(s)	40, 163, 484
BmsI	GCATC	1 cut(s)	253
BpiI	GAAGAC	1 cut(s)	84
BplI	GAGNNNNNCTC	2 cut(s)	398, 430
BsaJI	CCNNGG	1 cut(s)	162
Bsc4I	CCNNNNNNNGG	2 cut(s)	70, 483
Bse1I	ACTGG	3 cut(s)	219, 264, 441
BseBI	CCWGG	3 cut(s)	40, 163, 484
BseDI	CCNNGG	1 cut(s)	162
BseGI	GGATG	2 cut(s)	97, 268
BseLI	CCNNNNNNNGG	2 cut(s)	70, 483
BseMII	CTCAG	2 cut(s)	191, 417
BseNI	ACTGG	3 cut(s)	219, 264, 441
BseRI	GAGGAG	2 cut(s)	182, 406
BseXI	GCAGC	5 cut(s)	109, 372, 375, 378, 381
BseYI	CCCAGC	1 cut(s)	43
BshFI	GGCC	3 cut(s)	63, 134, 564
BslI	CCNNNNNNNGG	2 cut(s)	70, 483
BsmI	GAATGC	1 cut(s)	385
BsnI	GGCC	3 cut(s)	63, 134, 564
Bsp1286I	GDGCHC	2 cut(s)	256, 277
Bsp143I	GATC	4 cut(s)	47, 319, 398, 473
BspACI	CCGC	1 cut(s)	57
BspANI	GGCC	3 cut(s)	63, 134, 564
BspCNI	CTCAG	2 cut(s)	192, 416
BspLI	GGNNCC	1 cut(s)	49
BspPI	GGATC	4 cut(s)	42, 55, 393, 468
BsrI	ACTGG	3 cut(s)	219, 264, 441
BssECI	CCNNGG	1 cut(s)	162
BssMI	GATC	4 cut(s)	47, 319, 398, 473
Bst2UI	CCWGG	3 cut(s)	40, 163, 484
BstC8I	GCNNGC	6 cut(s)	61, 120, 136, 277, 281, 285
BstDEI	CTNAG	3 cut(s)	200, 403, 489
BstF5I	GGATG	2 cut(s)	97, 268
BstKTI	GATC	4 cut(s)	50, 322, 401, 476
BstMBI	GATC	4 cut(s)	47, 319, 398, 473
BstMWI	GCNNNNNNNGC	6 cut(s)	23, 60, 131, 272, 366, 369
BstNI	CCWGG	3 cut(s)	40, 163, 484
BstNSI	RCATGY	1 cut(s)	122
BstSCI	CCNGG	3 cut(s)	38, 161, 482
BstV1I	GCAGC	5 cut(s)	109, 372, 375, 378, 381
BstV2I	GAAGAC	1 cut(s)	84
BstX2I	RGATCY	3 cut(s)	47, 398, 473
BstXI	CCANNNNNNTGG	1 cut(s)	308
BstYI	RGATCY	3 cut(s)	47, 398, 473
BsuRI	GGCC	3 cut(s)	63, 134, 564
BtsCI	GGATG	2 cut(s)	97, 268
BtsI	GCAGTG	1 cut(s)	547
BtsIMutI	CAGTG	1 cut(s)	547
Cac8I	GCNNGC	6 cut(s)	61, 120, 136, 277, 281, 285
Cfr13I	GGNCC	2 cut(s)	62, 563
Csp6I	GTAC	1 cut(s)	172
CviAII	CATG	2 cut(s)	85, 119
CviQI	GTAC	1 cut(s)	172
DdeI	CTNAG	3 cut(s)	200, 403, 489
DpnI	GATC	4 cut(s)	49, 321, 400, 475
DpnII	GATC	4 cut(s)	47, 319, 398, 473
DraI	TTTAAA	1 cut(s)	351
DrdI	GACNNNNNNGTC	1 cut(s)	427
DseDI	GACNNNNNNGTC	1 cut(s)	427
EaeI	YGGCCR	1 cut(s)	132
Eco24I	GRGCYC	2 cut(s)	256, 277
EcoRII	CCWGG	3 cut(s)	38, 161, 482
EcoT38I	GRGCYC	2 cut(s)	256, 277
FaeI	CATG	2 cut(s)	88, 122
FaiI	YATR	4 cut(s)	29, 86, 120, 153
FatI	CATG	2 cut(s)	84, 118
Fnu4HI	GCNGC	5 cut(s)	123, 361, 364, 367, 370
FokI	GGATG	2 cut(s)	104, 275
FriOI	GRGCYC	2 cut(s)	256, 277
Fsp4HI	GCNGC	5 cut(s)	123, 361, 364, 367, 370
FspBI	CTAG	4 cut(s)	306, 411, 537, 604
GluI	GCNGC	5 cut(s)	123, 361, 364, 367, 370
GsaI	CCCAGC	1 cut(s)	47
HaeIII	GGCC	3 cut(s)	63, 134, 564
Hin1II	CATG	2 cut(s)	88, 122
HindIII	AAGCTT	2 cut(s)	15, 281
HinfI	GANTC	5 cut(s)	10, 407, 434, 464, 582
HphI	GGTGA	1 cut(s)	99
Hpy188I	TCNGA	3 cut(s)	319, 406, 433
Hpy188III	TCNNGA	5 cut(s)	390, 468, 522, 579, 598
HpyAV	CCTTC	2 cut(s)	331, 387
HpyCH4V	TGCA	1 cut(s)	31
HpyF10VI	GCNNNNNNNGC	6 cut(s)	23, 60, 131, 272, 366, 369
HpyF3I	CTNAG	3 cut(s)	200, 403, 489
Hsp92II	CATG	2 cut(s)	88, 122
Kzo9I	GATC	4 cut(s)	47, 319, 398, 473
LmnI	GCTCC	2 cut(s)	59, 419
Lsp1109I	GCAGC	5 cut(s)	109, 372, 375, 378, 381
LweI	GCATC	1 cut(s)	253
MaeI	CTAG	4 cut(s)	306, 411, 537, 604
MalI	GATC	4 cut(s)	49, 321, 400, 475
MboI	GATC	4 cut(s)	47, 319, 398, 473
MboII	GAAGA	7 cut(s)	89, 203, 306, 429, 461, 464, 483
MflI	RGATCY	3 cut(s)	47, 398, 473
MhlI	GDGCHC	2 cut(s)	256, 277
MlsI	TGGCCA	1 cut(s)	134
MluCI	AATT	1 cut(s)	156
MluNI	TGGCCA	1 cut(s)	134
MlyI	GAGTC	1 cut(s)	416
MnlI	CCTC	5 cut(s)	64, 160, 412, 427, 547
Mox20I	TGGCCA	1 cut(s)	134
MroXI	GAANNNNTTC	1 cut(s)	385
MscI	TGGCCA	1 cut(s)	134
MseI	TTAA	2 cut(s)	141, 350
MslI	CAYNNNNRTG	2 cut(s)	112, 306
Msp20I	TGGCCA	1 cut(s)	134
MspA1I	CMGCKG	1 cut(s)	59
MspR9I	CCNGG	3 cut(s)	40, 163, 484
Mva1269I	GAATGC	1 cut(s)	385
MvaI	CCWGG	3 cut(s)	40, 163, 484
MwoI	GCNNNNNNNGC	6 cut(s)	23, 60, 131, 272, 366, 369
NdeII	GATC	4 cut(s)	47, 319, 398, 473
NlaIII	CATG	2 cut(s)	88, 122
NlaIV	GGNNCC	1 cut(s)	49
NspI	RCATGY	1 cut(s)	122
OliI	CACNNNNGTG	2 cut(s)	112, 306
PaeI	GCATGC	1 cut(s)	122
PcsI	WCGNNNNNNNCGW	1 cut(s)	425
PctI	GAATGC	1 cut(s)	385
PdmI	GAANNNNTTC	1 cut(s)	385
PfeI	GAWTC	4 cut(s)	10, 434, 464, 582
PkrI	GCNGC	5 cut(s)	124, 362, 365, 368, 371
PleI	GAGTC	1 cut(s)	415
PpsI	GAGTC	1 cut(s)	415
Psp6I	CCWGG	3 cut(s)	38, 161, 482
PspFI	CCCAGC	1 cut(s)	43
PspGI	CCWGG	3 cut(s)	38, 161, 482
PspN4I	GGNNCC	1 cut(s)	49
PspPI	GGNCC	2 cut(s)	62, 563
PsuI	RGATCY	3 cut(s)	47, 398, 473
RsaI	GTAC	1 cut(s)	173
RsaNI	GTAC	1 cut(s)	172
RseI	CAYNNNNRTG	2 cut(s)	112, 306
SaqAI	TTAA	2 cut(s)	141, 350
SatI	GCNGC	5 cut(s)	123, 361, 364, 367, 370
Sau3AI	GATC	4 cut(s)	47, 319, 398, 473
Sau96I	GGNCC	2 cut(s)	62, 563
SchI	GAGTC	1 cut(s)	416
ScrFI	CCNGG	3 cut(s)	40, 163, 484
SduI	GDGCHC	2 cut(s)	256, 277
SfaNI	GCATC	1 cut(s)	253
SmiMI	CAYNNNNRTG	2 cut(s)	112, 306
SphI	GCATGC	1 cut(s)	122
Sse9I	AATT	1 cut(s)	156
SsiI	CCGC	1 cut(s)	57
SspMI	CTAG	4 cut(s)	306, 411, 537, 604
StyD4I	CCNGG	3 cut(s)	38, 161, 482
TaqI	TCGA	2 cut(s)	75, 419
TasI	AATT	1 cut(s)	156
TatI	WGTACW	1 cut(s)	171
TfiI	GAWTC	4 cut(s)	10, 434, 464, 582
Tru1I	TTAA	2 cut(s)	141, 350
Tru9I	TTAA	2 cut(s)	141, 350
TscAI	CASTG	1 cut(s)	547
TseI	GCWGC	5 cut(s)	122, 360, 363, 366, 369
TspDTI	ATGAA	4 cut(s)	87, 92, 210, 414
TspRI	CASTG	1 cut(s)	547
XceI	RCATGY	1 cut(s)	122
XmnI	GAANNNNTTC	1 cut(s)	385
XspI	CTAG	4 cut(s)	306, 411, 537, 604

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.