Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0007913

Physical Location & Seq

Genomic Coordinates Reverse (-)

3196565 .. 3198480

Gene Structure 1916 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1039400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGAAAATAATCTGTCGAAAAGGGTAAACTATTTTCGATATATGGATTCGTGCTTGGATACTCCCTCCACCGGCCCAACCCAGAGTTCTATGTTTCATACCACCAGTGACTCCACCATTGCAGCAACAACAGCTGCTTCGCAAAAGGAGGGGAAAGGGCCGAGTCTGATTGCCAAGCTCATGGGAATTGAAGAGTACCCCTCGAGACCTTTGCAGGCTGCTCTGAAGAAACAGTTTGAGGAAGGTGAGAAGACTGTTTCAAGTCAATATCTTGGCAACCAATTACTGCGACAATCACAATCTCGAAACGCTCATCTCAGAAATGTAGCATGTAACTCAACTGAGCGGAAAAGAAATCACTTAAAGAAGGAAAATCCAGCCAAAAATCCTGAAGTAACTAAATCAGTTACCAAAAATGTTGTGAGTGAAGAAAGTGAGATGAGAATTATTACGGACTATAAAAGTGACGCTTCCCCAATCAAAGCTGGTCTTGCAGACGAAAACCCTAGGGAAGAAGAAACAGATGCCTTTGTATCTCAGAGTGAGTGGAGGTATGGCCTTCTTGAATTACAAGAACTTGATTATGTAGTGTCCAGTGTTGAACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4378 VARLMGL

Protein Analysis

203

Amino Acids

22.68

Weight (kDa)

5.89

Isoelectric Point (pI)

60.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007913)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24630 AT3G24630
malus_domestica	MD00G1028300.v1.1 MD02G1039400.v1.1 MD15G1182400.v1.1
prunus_persica	Prupe.7G233100_v2.0.a1 Prupe.7G233100_v2.0.a1 Prupe.7G233100_v2.0.a1 Prupe.7G233100_v2.0.a1 Prupe.7G233100_v2.0.a1 Prupe.7G233100_v2.0.a1
pyrus_communis	pycom02g03210 pycom02g05190 pycom02g05210 pycom15g16470
rosa_chinensis	RchiOBHm_Chr2g0090061
rosa_laevigata	RLG00000016082
rosa_roxburghii	Rroxscaffold_2G00151430
rosa_rugosa	Rorug02G0005000
rosa_samantha	Rh2AG050700 Rh2BG049300 Rh2CG051500 Rh2DG050900
rosa_wichuraiana	Rw2G003990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	346
AciI	CCGC	1 cut(s)	346
AcuI	CTGAAG	2 cut(s)	245, 411
AfaI	GTAC	1 cut(s)	197
AfiI	CCNNNNNNNGG	1 cut(s)	71
AgsI	TTSAA	4 cut(s)	191, 261, 566, 602
AjuI	GAANNNNNNNTTGG	2 cut(s)	70, 102
AluBI	AGCT	3 cut(s)	134, 178, 485
AluI	AGCT	3 cut(s)	134, 178, 485
Alw26I	GTCTC	1 cut(s)	199
Ama87I	CYCGRG	1 cut(s)	202
AoxI	GGCC	3 cut(s)	73, 158, 556
ApeKI	GCWGC	3 cut(s)	122, 134, 218
AspA2I	CCTAGG	1 cut(s)	506
AspS9I	GGNCC	2 cut(s)	74, 158
AsuHPI	GGTGA	1 cut(s)	257
AvaI	CYCGRG	1 cut(s)	202
AvrII	CCTAGG	1 cut(s)	506
BbsI	GAAGAC	1 cut(s)	257
BbvI	GCAGC	3 cut(s)	121, 134, 205
BcgI	CGANNNNNNTGC	2 cut(s)	193, 227
BciVI	GTATCC	1 cut(s)	52
BcoDI	GTCTC	1 cut(s)	199
BfaI	CTAG	1 cut(s)	507
BfuI	GTATCC	1 cut(s)	52
BisI	GCNGC	3 cut(s)	123, 135, 219
BlnI	CCTAGG	1 cut(s)	506
BlsI	GCNGC	3 cut(s)	124, 136, 220
BmeT110I	CYCGRG	1 cut(s)	202
BmgT120I	GGNCC	2 cut(s)	74, 158
BmsI	GCATC	1 cut(s)	514
BpiI	GAAGAC	1 cut(s)	257
BplI	GAGNNNNNCTC	2 cut(s)	185, 217
BsaI	GGTCTC	1 cut(s)	199
BsaJI	CCNNGG	1 cut(s)	506
Bsc4I	CCNNNNNNNGG	1 cut(s)	71
Bse118I	RCCGGY	1 cut(s)	71
Bse1I	ACTGG	2 cut(s)	105, 594
Bse3DI	GCAATG	1 cut(s)	117
BseDI	CCNNGG	1 cut(s)	506
BseLI	CCNNNNNNNGG	1 cut(s)	71
BseMI	GCAATG	1 cut(s)	117
BseMII	CTCAG	3 cut(s)	331, 333, 551
BseNI	ACTGG	2 cut(s)	105, 594
BseXI	GCAGC	3 cut(s)	121, 134, 205
BshFI	GGCC	3 cut(s)	75, 160, 558
BsiHKCI	CYCGRG	1 cut(s)	202
BsiSI	CCGG	1 cut(s)	72
BslI	CCNNNNNNNGG	1 cut(s)	71
BsmAI	GTCTC	1 cut(s)	199
BsnI	GGCC	3 cut(s)	75, 160, 558
Bso31I	GGTCTC	1 cut(s)	199
BsoBI	CYCGRG	1 cut(s)	202
BspACI	CCGC	1 cut(s)	346
BspANI	GGCC	3 cut(s)	75, 160, 558
BspCNI	CTCAG	3 cut(s)	330, 334, 550
BspTNI	GGTCTC	1 cut(s)	199
BsrBI	CCGCTC	1 cut(s)	346
BsrDI	GCAATG	1 cut(s)	117
BsrFI	RCCGGY	1 cut(s)	71
BsrI	ACTGG	2 cut(s)	105, 594
BssAI	RCCGGY	1 cut(s)	71
BssECI	CCNNGG	1 cut(s)	506
BssT1I	CCWWGG	1 cut(s)	506
Bst4CI	ACNGT	2 cut(s)	234, 256
Bst6I	CTCTTC	1 cut(s)	186
BstC8I	GCNNGC	1 cut(s)	216
BstDEI	CTNAG	3 cut(s)	317, 342, 537
BstMAI	GTCTC	1 cut(s)	199
BstMWI	GCNNNNNNNGC	2 cut(s)	131, 491
BstNSI	RCATGY	1 cut(s)	333
BstV1I	GCAGC	3 cut(s)	121, 134, 205
BstV2I	GAAGAC	1 cut(s)	257
BstXI	CCANNNNNNTGG	1 cut(s)	181
BsuI	GTATCC	1 cut(s)	52
BsuRI	GGCC	3 cut(s)	75, 160, 558
BtsIMutI	CAGTG	2 cut(s)	112, 601
Cac8I	GCNNGC	1 cut(s)	216
Cfr10I	RCCGGY	1 cut(s)	71
Cfr13I	GGNCC	2 cut(s)	74, 158
CseI	GACGC	1 cut(s)	476
Csp6I	GTAC	1 cut(s)	196
CviAII	CATG	2 cut(s)	181, 330
CviJI	RGCY	8 cut(s)	75, 134, 160, 178, 218, 380, 485, 558
CviKI_1	RGCY	8 cut(s)	75, 134, 160, 178, 218, 380, 485, 558
CviQI	GTAC	1 cut(s)	196
DdeI	CTNAG	3 cut(s)	317, 342, 537
Eam1104I	CTCTTC	1 cut(s)	186
EarI	CTCTTC	1 cut(s)	186
Eco130I	CCWWGG	1 cut(s)	506
Eco31I	GGTCTC	1 cut(s)	199
Eco57I	CTGAAG	2 cut(s)	245, 411
Eco88I	CYCGRG	1 cut(s)	202
EcoT14I	CCWWGG	1 cut(s)	506
ErhI	CCWWGG	1 cut(s)	506
FaeI	CATG	2 cut(s)	184, 333
FaiI	YATR	9 cut(s)	42, 44, 92, 99, 182, 331, 459, 555, 585
FalI	AAGNNNNNCTT	4 cut(s)	454, 486, 474, 506
FatI	CATG	2 cut(s)	180, 329
Fnu4HI	GCNGC	3 cut(s)	123, 135, 219
Fsp4HI	GCNGC	3 cut(s)	123, 135, 219
FspBI	CTAG	1 cut(s)	507
GluI	GCNGC	3 cut(s)	123, 135, 219
HaeIII	GGCC	3 cut(s)	75, 160, 558
HapII	CCGG	1 cut(s)	72
HgaI	GACGC	1 cut(s)	476
Hin1II	CATG	2 cut(s)	184, 333
HinfI	GANTC	3 cut(s)	47, 110, 163
HpaII	CCGG	1 cut(s)	72
HphI	GGTGA	1 cut(s)	257
Hpy166II	GTNNAC	1 cut(s)	28
Hpy188I	TCNGA	4 cut(s)	168, 225, 320, 540
Hpy188III	TCNNGA	4 cut(s)	204, 303, 389, 563
Hpy8I	GTNNAC	1 cut(s)	28
HpyAV	CCTTC	3 cut(s)	236, 361, 569
HpyCH4III	ACNGT	2 cut(s)	234, 256
HpyCH4V	TGCA	3 cut(s)	122, 214, 494
HpyF10VI	GCNNNNNNNGC	2 cut(s)	131, 491
HpyF3I	CTNAG	3 cut(s)	317, 342, 537
Hsp92II	CATG	2 cut(s)	184, 333
LpnPI	CCDG	7 cut(s)	85, 95, 118, 200, 390, 402, 471
Lsp1109I	GCAGC	3 cut(s)	121, 134, 205
LweI	GCATC	1 cut(s)	514
MaeI	CTAG	1 cut(s)	507
MaeIII	GTNAC	5 cut(s)	107, 332, 394, 406, 464
MbiI	CCGCTC	1 cut(s)	346
MboII	GAAGA	6 cut(s)	203, 238, 262, 440, 524, 527
MluCI	AATT	4 cut(s)	186, 281, 444, 566
MlyI	GAGTC	2 cut(s)	104, 172
MnlI	CCTC	5 cut(s)	76, 142, 211, 232, 543
MseI	TTAA	2 cut(s)	362, 607
MspA1I	CMGCKG	1 cut(s)	134
MspI	CCGG	1 cut(s)	72
MwoI	GCNNNNNNNGC	2 cut(s)	131, 491
NlaIII	CATG	2 cut(s)	184, 333
NmeAIII	GCCGAG	1 cut(s)	186
NmuCI	GTSAC	2 cut(s)	107, 464
NspI	RCATGY	1 cut(s)	333
PaeR7I	CTCGAG	1 cut(s)	202
PfeI	GAWTC	1 cut(s)	47
PkrI	GCNGC	3 cut(s)	124, 136, 220
PleI	GAGTC	2 cut(s)	104, 171
PpsI	GAGTC	2 cut(s)	104, 171
PspPI	GGNCC	2 cut(s)	74, 158
PvuII	CAGCTG	1 cut(s)	134
RsaI	GTAC	1 cut(s)	197
RsaNI	GTAC	1 cut(s)	196
SaqAI	TTAA	2 cut(s)	362, 607
SatI	GCNGC	3 cut(s)	123, 135, 219
Sau96I	GGNCC	2 cut(s)	74, 158
SchI	GAGTC	2 cut(s)	104, 172
SetI	ASST	6 cut(s)	136, 180, 211, 247, 487, 554
SfaNI	GCATC	1 cut(s)	514
Sfr274I	CTCGAG	1 cut(s)	202
SlaI	CTCGAG	1 cut(s)	202
SmlI	CTYRAG	1 cut(s)	202
SmoI	CTYRAG	1 cut(s)	202
Sse9I	AATT	4 cut(s)	186, 281, 444, 566
SsiI	CCGC	1 cut(s)	346
SspMI	CTAG	1 cut(s)	507
StyI	CCWWGG	1 cut(s)	506
TaaI	ACNGT	2 cut(s)	234, 256
TaqI	TCGA	4 cut(s)	17, 37, 203, 304
TasI	AATT	4 cut(s)	186, 281, 444, 566
TfiI	GAWTC	1 cut(s)	47
Tru1I	TTAA	2 cut(s)	362, 607
Tru9I	TTAA	2 cut(s)	362, 607
TscAI	CASTG	2 cut(s)	112, 601
TseFI	GTSAC	2 cut(s)	107, 464
TseI	GCWGC	3 cut(s)	122, 134, 218
Tsp45I	GTSAC	2 cut(s)	107, 464
TspDTI	ATGAA	1 cut(s)	86
TspGWI	ACGGA	1 cut(s)	467
TspRI	CASTG	2 cut(s)	112, 601
XceI	RCATGY	1 cut(s)	333
XhoI	CTCGAG	1 cut(s)	202
XmaJI	CCTAGG	1 cut(s)	506
XspI	CTAG	1 cut(s)	507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.