guanine nucleotide exchange factor
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G19560 AT5G19560 AT5G19560 AT5G19560 AT5G19560 |
| fragaria_vesca | FvH4_1g04400 |
| malus_domestica | MD02G1043700.v1.1 MD15G1182200.v1.1 |
| prunus_persica | Prupe.7G233200_v2.0.a1 |
| pyrus_communis | pycom15g16460 |
| rosa_chinensis | RchiOBHm_Chr2g0090051 |
| rosa_laevigata | RLG00000016081 |
| rosa_multiflora | Rmu_sc0000226.1_g000006 |
| rosa_roxburghii | Rroxscaffold_2G00151440 |
| rosa_rugosa | Rorug02G0005000 |
| rosa_samantha | Rh2AG050600 Rh2BG049200 Rh2CG051400 Rh2DG050800 |
| rosa_wichuraiana | Rw2G004000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 1418 |
| AciI | CCGC | 2 cut(s) | 755, 1418 |
| AclWI | GGATC | 1 cut(s) | 956 |
| AcoI | YGGCCR | 1 cut(s) | 628 |
| AcsI | RAATTY | 5 cut(s) | 91, 515, 971, 1179, 1209 |
| AcuI | CTGAAG | 4 cut(s) | 71, 219, 270, 1419 |
| AcyI | GRCGYC | 1 cut(s) | 1337 |
| AdeI | CACNNNGTG | 1 cut(s) | 1009 |
| AfaI | GTAC | 3 cut(s) | 229, 822, 855 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 761, 905 |
| AjnI | CCWGG | 4 cut(s) | 161, 633, 918, 1174 |
| Alw21I | GWGCWC | 1 cut(s) | 1005 |
| Alw26I | GTCTC | 6 cut(s) | 73, 120, 367, 450, 1136, 1433 |
| AlwI | GGATC | 1 cut(s) | 956 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 410 |
| AoxI | GGCC | 3 cut(s) | 628, 1035, 1275 |
| ApeKI | GCWGC | 5 cut(s) | 170, 322, 404, 790, 830 |
| ApoI | RAATTY | 5 cut(s) | 91, 515, 971, 1179, 1209 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 138, 1084, 1305 |
| AspS9I | GGNCC | 4 cut(s) | 4, 182, 244, 1395 |
| AsuHPI | GGTGA | 6 cut(s) | 344, 481, 571, 713, 935, 1365 |
| AvaII | GGWCC | 4 cut(s) | 4, 182, 244, 1395 |
| BalI | TGGCCA | 1 cut(s) | 630 |
| BbsI | GAAGAC | 4 cut(s) | 183, 1077, 1419, 1554 |
| Bbv12I | GWGCWC | 1 cut(s) | 1005 |
| BbvI | GCAGC | 5 cut(s) | 157, 309, 416, 777, 842 |
| BccI | CCATC | 4 cut(s) | 233, 608, 780, 1070 |
| BceAI | ACGGC | 2 cut(s) | 133, 145 |
| BciT130I | CCWGG | 4 cut(s) | 163, 635, 920, 1176 |
| BcoDI | GTCTC | 6 cut(s) | 73, 120, 367, 450, 1136, 1433 |
| BfaI | CTAG | 4 cut(s) | 401, 434, 1244, 1407 |
| BfmI | CTRYAG | 2 cut(s) | 171, 270 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 763 |
| BisI | GCNGC | 5 cut(s) | 171, 323, 405, 791, 831 |
| BlsI | GCNGC | 5 cut(s) | 172, 324, 406, 792, 832 |
| BmcAI | AGTACT | 2 cut(s) | 822, 855 |
| Bme1390I | CCNGG | 4 cut(s) | 163, 635, 920, 1176 |
| Bme18I | GGWCC | 4 cut(s) | 4, 182, 244, 1395 |
| BmgT120I | GGNCC | 4 cut(s) | 4, 182, 244, 1395 |
| BmiI | GGNNCC | 3 cut(s) | 245, 649, 1397 |
| BmrFI | CCNGG | 4 cut(s) | 163, 635, 920, 1176 |
| BmsI | GCATC | 3 cut(s) | 416, 670, 697 |
| BpiI | GAAGAC | 4 cut(s) | 183, 1077, 1419, 1554 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1558, 1590 |
| BpmI | CTGGAG | 1 cut(s) | 145 |
| BpuEI | CTTGAG | 3 cut(s) | 669, 834, 1640 |
| BsaHI | GRCGYC | 1 cut(s) | 1337 |
| BsaI | GGTCTC | 1 cut(s) | 1136 |
| BsaJI | CCNNGG | 4 cut(s) | 247, 919, 984, 1174 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 761, 905 |
| Bse1I | ACTGG | 1 cut(s) | 52 |
| Bse3DI | GCAATG | 1 cut(s) | 840 |
| BseBI | CCWGG | 4 cut(s) | 163, 635, 920, 1176 |
| BseDI | CCNNGG | 4 cut(s) | 247, 919, 984, 1174 |
| BseGI | GGATG | 2 cut(s) | 1081, 1231 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 761, 905 |
| BseMI | GCAATG | 1 cut(s) | 840 |
| BseMII | CTCAG | 2 cut(s) | 140, 812 |
| BseNI | ACTGG | 1 cut(s) | 52 |
| BseXI | GCAGC | 5 cut(s) | 157, 309, 416, 777, 842 |
| BsgI | GTGCAG | 1 cut(s) | 566 |
| Bsh1236I | CGCG | 1 cut(s) | 1418 |
| Bsh1285I | CGRYCG | 1 cut(s) | 189 |
| BshFI | GGCC | 3 cut(s) | 630, 1037, 1277 |
| BsiEI | CGRYCG | 1 cut(s) | 189 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1005 |
| BslFI | GGGAC | 4 cut(s) | 257, 506, 737, 1381 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 761, 905 |
| BsmAI | GTCTC | 6 cut(s) | 73, 120, 367, 450, 1136, 1433 |
| BsmBI | CGTCTC | 1 cut(s) | 120 |
| BsmFI | GGGAC | 4 cut(s) | 257, 506, 737, 1381 |
| BsmI | GAATGC | 2 cut(s) | 624, 1483 |
| BsnI | GGCC | 3 cut(s) | 630, 1037, 1277 |
| Bso31I | GGTCTC | 1 cut(s) | 1136 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1005 |
| Bsp143I | GATC | 5 cut(s) | 96, 186, 502, 577, 961 |
| Bsp19I | CCATGG | 1 cut(s) | 984 |
| BspACI | CCGC | 2 cut(s) | 755, 1418 |
| BspANI | GGCC | 3 cut(s) | 630, 1037, 1277 |
| BspCNI | CTCAG | 2 cut(s) | 141, 811 |
| BspFNI | CGCG | 1 cut(s) | 1418 |
| BspHI | TCATGA | 1 cut(s) | 217 |
| BspLI | GGNNCC | 3 cut(s) | 245, 649, 1397 |
| BspMAI | CTGCAG | 1 cut(s) | 175 |
| BspPI | GGATC | 1 cut(s) | 956 |
| BspTNI | GGTCTC | 1 cut(s) | 1136 |
| BsrDI | GCAATG | 1 cut(s) | 840 |
| BsrI | ACTGG | 1 cut(s) | 52 |
| BssECI | CCNNGG | 4 cut(s) | 247, 919, 984, 1174 |
| BssMI | GATC | 5 cut(s) | 96, 186, 502, 577, 961 |
| BssNI | GRCGYC | 1 cut(s) | 1337 |
| BssT1I | CCWWGG | 2 cut(s) | 247, 984 |
| Bst2UI | CCWGG | 4 cut(s) | 163, 635, 920, 1176 |
| Bst4CI | ACNGT | 3 cut(s) | 182, 745, 949 |
| Bst6I | CTCTTC | 5 cut(s) | 370, 717, 1049, 1109, 1125 |
| BstACI | GRCGYC | 1 cut(s) | 1337 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1009 |
| BstC8I | GCNNGC | 3 cut(s) | 485, 608, 916 |
| BstDEI | CTNAG | 6 cut(s) | 149, 318, 798, 900, 1609, 1637 |
| BstDSI | CCRYGG | 1 cut(s) | 984 |
| BstF5I | GGATG | 2 cut(s) | 1081, 1231 |
| BstFNI | CGCG | 1 cut(s) | 1418 |
| BstKTI | GATC | 5 cut(s) | 99, 189, 505, 580, 964 |
| BstMAI | GTCTC | 6 cut(s) | 73, 120, 367, 450, 1136, 1433 |
| BstMBI | GATC | 5 cut(s) | 96, 186, 502, 577, 961 |
| BstMCI | CGRYCG | 1 cut(s) | 189 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 763, 836, 845, 1009, 1334, 1521 |
| BstNI | CCWGG | 4 cut(s) | 163, 635, 920, 1176 |
| BstSCI | CCNGG | 4 cut(s) | 161, 633, 918, 1174 |
| BstSFI | CTRYAG | 2 cut(s) | 171, 270 |
| BstUI | CGCG | 1 cut(s) | 1418 |
| BstV1I | GCAGC | 5 cut(s) | 157, 309, 416, 777, 842 |
| BstV2I | GAAGAC | 4 cut(s) | 183, 1077, 1419, 1554 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1076 |
| BsuRI | GGCC | 3 cut(s) | 630, 1037, 1277 |
| BtgI | CCRYGG | 1 cut(s) | 984 |
| BtsCI | GGATG | 2 cut(s) | 1081, 1231 |
| BtsIMutI | CAGTG | 4 cut(s) | 741, 954, 1365, 1551 |
| Cac8I | GCNNGC | 3 cut(s) | 485, 608, 916 |
| CaiI | CAGNNNCTG | 1 cut(s) | 410 |
| CciI | TCATGA | 1 cut(s) | 217 |
| Cfr13I | GGNCC | 4 cut(s) | 4, 182, 244, 1395 |
| CpoI | CGGWCCG | 1 cut(s) | 182 |
| CseI | GACGC | 2 cut(s) | 1326, 1424 |
| Csp6I | GTAC | 3 cut(s) | 228, 821, 854 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 185, 220 |
| CspI | CGGWCCG | 1 cut(s) | 182 |
| CviAII | CATG | 8 cut(s) | 156, 218, 547, 586, 985, 1089, 1288, 1468 |
| CviQI | GTAC | 3 cut(s) | 228, 821, 854 |
| DdeI | CTNAG | 6 cut(s) | 149, 318, 798, 900, 1609, 1637 |
| DpnI | GATC | 5 cut(s) | 98, 188, 504, 579, 963 |
| DpnII | GATC | 5 cut(s) | 96, 186, 502, 577, 961 |
| DraI | TTTAAA | 1 cut(s) | 1543 |
| DraIII | CACNNNGTG | 1 cut(s) | 1009 |
| EaeI | YGGCCR | 1 cut(s) | 628 |
| Eam1104I | CTCTTC | 5 cut(s) | 370, 717, 1049, 1109, 1125 |
| EarI | CTCTTC | 5 cut(s) | 370, 717, 1049, 1109, 1125 |
| Eco130I | CCWWGG | 2 cut(s) | 247, 984 |
| Eco147I | AGGCCT | 1 cut(s) | 1037 |
| Eco31I | GGTCTC | 1 cut(s) | 1136 |
| Eco47I | GGWCC | 4 cut(s) | 4, 182, 244, 1395 |
| Eco57I | CTGAAG | 4 cut(s) | 71, 219, 270, 1419 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1395 |
| EcoRI | GAATTC | 2 cut(s) | 515, 1179 |
| EcoRII | CCWGG | 4 cut(s) | 161, 633, 918, 1174 |
| EcoT14I | CCWWGG | 2 cut(s) | 247, 984 |
| ErhI | CCWWGG | 2 cut(s) | 247, 984 |
| Esp3I | CGTCTC | 1 cut(s) | 120 |
| FaeI | CATG | 8 cut(s) | 159, 221, 550, 589, 988, 1092, 1291, 1471 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1293, 1325, 1442, 1474 |
| FaqI | GGGAC | 4 cut(s) | 257, 506, 737, 1381 |
| FatI | CATG | 8 cut(s) | 155, 217, 546, 585, 984, 1088, 1287, 1467 |
| FauI | CCCGC | 1 cut(s) | 762 |
| Fnu4HI | GCNGC | 5 cut(s) | 171, 323, 405, 791, 831 |
| FokI | GGATG | 2 cut(s) | 1088, 1238 |
| Fsp4HI | GCNGC | 5 cut(s) | 171, 323, 405, 791, 831 |
| FspBI | CTAG | 4 cut(s) | 401, 434, 1244, 1407 |
| GluI | GCNGC | 5 cut(s) | 171, 323, 405, 791, 831 |
| GsuI | CTGGAG | 1 cut(s) | 145 |
| HaeIII | GGCC | 3 cut(s) | 630, 1037, 1277 |
| HgaI | GACGC | 2 cut(s) | 1326, 1424 |
| Hin1I | GRCGYC | 1 cut(s) | 1337 |
| Hin1II | CATG | 8 cut(s) | 159, 221, 550, 589, 988, 1092, 1291, 1471 |
| HindIII | AAGCTT | 2 cut(s) | 1270, 1616 |
| HinfI | GANTC | 8 cut(s) | 73, 151, 562, 689, 806, 890, 926, 1364 |
| HphI | GGTGA | 6 cut(s) | 344, 481, 571, 713, 935, 1365 |
| Hpy166II | GTNNAC | 4 cut(s) | 814, 952, 996, 1363 |
| Hpy188III | TCNNGA | 5 cut(s) | 218, 449, 686, 1196, 1244 |
| Hpy8I | GTNNAC | 4 cut(s) | 814, 952, 996, 1363 |
| HpyAV | CCTTC | 9 cut(s) | 31, 116, 294, 298, 534, 755, 796, 1288, 1501 |
| HpyCH4III | ACNGT | 3 cut(s) | 182, 745, 949 |
| HpyCH4IV | ACGT | 2 cut(s) | 61, 1284 |
| HpyCH4V | TGCA | 6 cut(s) | 34, 173, 583, 793, 942, 1481 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 763, 836, 845, 1009, 1334, 1521 |
| HpyF3I | CTNAG | 6 cut(s) | 149, 318, 798, 900, 1609, 1637 |
| HpySE526I | ACGT | 2 cut(s) | 61, 1284 |
| Hsp92I | GRCGYC | 1 cut(s) | 1337 |
| Hsp92II | CATG | 8 cut(s) | 159, 221, 550, 589, 988, 1092, 1291, 1471 |
| Kzo9I | GATC | 5 cut(s) | 96, 186, 502, 577, 961 |
| LmnI | GCTCC | 3 cut(s) | 164, 209, 1520 |
| Lsp1109I | GCAGC | 5 cut(s) | 157, 309, 416, 777, 842 |
| LweI | GCATC | 3 cut(s) | 416, 670, 697 |
| MaeI | CTAG | 4 cut(s) | 401, 434, 1244, 1407 |
| MaeII | ACGT | 2 cut(s) | 61, 1284 |
| MaeIII | GTNAC | 2 cut(s) | 496, 559 |
| MalI | GATC | 5 cut(s) | 98, 188, 504, 579, 963 |
| MboI | GATC | 5 cut(s) | 96, 186, 502, 577, 961 |
| MhlI | GDGCHC | 1 cut(s) | 1005 |
| MlsI | TGGCCA | 1 cut(s) | 630 |
| MluCI | AATT | 7 cut(s) | 91, 143, 385, 515, 971, 1179, 1209 |
| MluNI | TGGCCA | 1 cut(s) | 630 |
| MlyI | GAGTC | 4 cut(s) | 160, 556, 683, 1358 |
| Mox20I | TGGCCA | 1 cut(s) | 630 |
| MroXI | GAANNNNTTC | 3 cut(s) | 138, 1084, 1305 |
| MscI | TGGCCA | 1 cut(s) | 630 |
| MseI | TTAA | 4 cut(s) | 747, 843, 1160, 1542 |
| MslI | CAYNNNNRTG | 3 cut(s) | 947, 1074, 1292 |
| Msp20I | TGGCCA | 1 cut(s) | 630 |
| MspR9I | CCNGG | 4 cut(s) | 163, 635, 920, 1176 |
| Mva1269I | GAATGC | 2 cut(s) | 624, 1483 |
| MvaI | CCWGG | 4 cut(s) | 163, 635, 920, 1176 |
| MvnI | CGCG | 1 cut(s) | 1418 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 763, 836, 845, 1009, 1334, 1521 |
| NcoI | CCATGG | 1 cut(s) | 984 |
| NdeII | GATC | 5 cut(s) | 96, 186, 502, 577, 961 |
| NlaIII | CATG | 8 cut(s) | 159, 221, 550, 589, 988, 1092, 1291, 1471 |
| NlaIV | GGNNCC | 3 cut(s) | 245, 649, 1397 |
| NmeAIII | GCCGAG | 2 cut(s) | 544, 1633 |
| NmuCI | GTSAC | 2 cut(s) | 496, 559 |
| PagI | TCATGA | 1 cut(s) | 217 |
| PceI | AGGCCT | 1 cut(s) | 1037 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 186, 516 |
| PctI | GAATGC | 2 cut(s) | 624, 1483 |
| PdmI | GAANNNNTTC | 3 cut(s) | 138, 1084, 1305 |
| PfeI | GAWTC | 4 cut(s) | 73, 806, 890, 926 |
| PfoI | TCCNGGA | 1 cut(s) | 161 |
| PkrI | GCNGC | 5 cut(s) | 172, 324, 406, 792, 832 |
| Ple19I | CGATCG | 1 cut(s) | 189 |
| PleI | GAGTC | 4 cut(s) | 159, 556, 683, 1358 |
| PpsI | GAGTC | 4 cut(s) | 159, 556, 683, 1358 |
| PpuMI | RGGWCCY | 1 cut(s) | 1395 |
| Psp5II | RGGWCCY | 1 cut(s) | 1395 |
| Psp6I | CCWGG | 4 cut(s) | 161, 633, 918, 1174 |
| PspGI | CCWGG | 4 cut(s) | 161, 633, 918, 1174 |
| PspN4I | GGNNCC | 3 cut(s) | 245, 649, 1397 |
| PspPI | GGNCC | 4 cut(s) | 4, 182, 244, 1395 |
| PspPPI | RGGWCCY | 1 cut(s) | 1395 |
| PstI | CTGCAG | 1 cut(s) | 175 |
| PstNI | CAGNNNCTG | 1 cut(s) | 410 |
| PvuI | CGATCG | 1 cut(s) | 189 |
| RsaI | GTAC | 3 cut(s) | 229, 822, 855 |
| RsaNI | GTAC | 3 cut(s) | 228, 821, 854 |
| RseI | CAYNNNNRTG | 3 cut(s) | 947, 1074, 1292 |
| Rsr2I | CGGWCCG | 1 cut(s) | 182 |
| RsrII | CGGWCCG | 1 cut(s) | 182 |
| SaqAI | TTAA | 4 cut(s) | 747, 843, 1160, 1542 |
| SatI | GCNGC | 5 cut(s) | 171, 323, 405, 791, 831 |
| Sau3AI | GATC | 5 cut(s) | 96, 186, 502, 577, 961 |
| Sau96I | GGNCC | 4 cut(s) | 4, 182, 244, 1395 |
| ScaI | AGTACT | 2 cut(s) | 822, 855 |
| SchI | GAGTC | 4 cut(s) | 160, 556, 683, 1358 |
| ScrFI | CCNGG | 4 cut(s) | 163, 635, 920, 1176 |
| SduI | GDGCHC | 1 cut(s) | 1005 |
| SfaNI | GCATC | 3 cut(s) | 416, 670, 697 |
| SfcI | CTRYAG | 2 cut(s) | 171, 270 |
| SinI | GGWCC | 4 cut(s) | 4, 182, 244, 1395 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 947, 1074, 1292 |
| SmlI | CTYRAG | 3 cut(s) | 684, 849, 1619 |
| SmoI | CTYRAG | 3 cut(s) | 684, 849, 1619 |
| Sse9I | AATT | 7 cut(s) | 91, 143, 385, 515, 971, 1179, 1209 |
| SseBI | AGGCCT | 1 cut(s) | 1037 |
| SsiI | CCGC | 2 cut(s) | 755, 1418 |
| SspMI | CTAG | 4 cut(s) | 401, 434, 1244, 1407 |
| StuI | AGGCCT | 1 cut(s) | 1037 |
| StyD4I | CCNGG | 4 cut(s) | 161, 633, 918, 1174 |
| StyI | CCWWGG | 2 cut(s) | 247, 984 |
| TaaI | ACNGT | 3 cut(s) | 182, 745, 949 |
| TaiI | ACGT | 2 cut(s) | 64, 1287 |
| TaqI | TCGA | 5 cut(s) | 189, 612, 781, 969, 1330 |
| TasI | AATT | 7 cut(s) | 91, 143, 385, 515, 971, 1179, 1209 |
| TatI | WGTACW | 2 cut(s) | 820, 853 |
| TfiI | GAWTC | 4 cut(s) | 73, 806, 890, 926 |
| Tru1I | TTAA | 4 cut(s) | 747, 843, 1160, 1542 |
| Tru9I | TTAA | 4 cut(s) | 747, 843, 1160, 1542 |
| TscAI | CASTG | 4 cut(s) | 748, 954, 1365, 1558 |
| TseFI | GTSAC | 2 cut(s) | 496, 559 |
| TseI | GCWGC | 5 cut(s) | 170, 322, 404, 790, 830 |
| Tsp45I | GTSAC | 2 cut(s) | 496, 559 |
| TspDTI | ATGAA | 7 cut(s) | 317, 602, 735, 789, 1077, 1079, 1456 |
| TspGWI | ACGGA | 1 cut(s) | 552 |
| TspRI | CASTG | 4 cut(s) | 748, 954, 1365, 1558 |
| VpaK11BI | GGWCC | 4 cut(s) | 4, 182, 244, 1395 |
| XapI | RAATTY | 5 cut(s) | 91, 515, 971, 1179, 1209 |
| XbaI | TCTAGA | 1 cut(s) | 1243 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 660 |
| XmnI | GAANNNNTTC | 3 cut(s) | 138, 1084, 1305 |
| XspI | CTAG | 4 cut(s) | 401, 434, 1244, 1407 |
| ZrmI | AGTACT | 2 cut(s) | 822, 855 |