Rroxscaffold_2G00151440

guanine nucleotide exchange factor

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
88678937 .. 88681103
2167 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00151440.1

Sequence Viewer

Length: 1533 bp
ATGCAGAAGACGAAATCTTTCCAGTTGAAACGGATGTTCGAGTTCCAAGCTGGGAGAAATCTACCGGGTTTGATCTTCGACCACGATGTGAATGAGGATGAACAATTATTAAGTCCTGCTGCAGAAGAGCCCCCATTGGAGATCAAGCACCAAACTAAATCACTTGAAGCCGAAAAGATACCAAGTCCTAAATGGTTGCCTTCAGATATGGAATTGATGAAGGAAAGGTTTTCGAAGCTGCTTTTGGGTGAAGACATGTCAGGTGGTGGAAAGGGTGTCTCTTCAGCCTTGGCTTTATCAAATGCCATAACAAATCTAGCAGCATCCGTTTTTGGAGAAACAAGAAAACTAGAGCCCATGTCTCCTGATAGGAAAGCGAGATGGGTGAAAGAGATTGGCTGGCTTCTGTCCGTGACTGATCACATTGTCGAATTTGTCCCTTCACAACAAAATGGAACAAACATGGAGATAATGATGACTCAACAAAGGAAGGATCTGCACATTAACATTCCTGCCCTACGCAAGCTCGATGCCATGCTCCTGGGCCACCTGGAGAGTTTTGCAAACCCAAGTGAGTTCTGGTATGTGAAAAGAGATGCCCGAGATGATGAGAAAGGTAGCAAACCAGAGAGAAATGATGAAAAATGGTGGTTACCAACTGTCAAAGTCCCATCAGAAGGTTTATCGGATGAGTGTCGAAAATGGCTGCAGTTTCAGAAGGATTCTGTCAACCAAGTACTAAAAGCAGCAATGGCAATCAATGCTCAAGTACTATCAGAAATGGATGTACCTGAGAACTATATTGAATCCCTTCCCAAGAATGGTAGAGCTAGCTTGGGTGATACAATCTACAAGAGCATAACAGAGGAGCACTTTGACCCTCTAGAATTCCTAACTAGCATGGACTTGTCCTCAGAGCACAAAGTGGTAGACCTGAAAGACAGGATCGAGGCCTCCATTGTGATTTGGAAGAGGAAGATGAACCTCAAGGATGGAAAGTCTTCATGGAGTTCTGGGGTGAGTTTCGAGAAGAGGGAACGATTTGAAGAGAGAGTAGAGACCGTCTTACTCCTAATCAAACAGAAGTTCCCAGGAATTCCCCAATCTGTGCTTGACATAAGTAAAATTCAATACAATAAGGATGTAGGGTATGCTATCCTGGAGAGCTATTCAAGGGTAATAGAAAGCTTGGCTTTCAATGTCATGTCGATGATAGATGATGTCCTTTATGCTGATAAAAAGACACGAACGGAGAAATCAAACAGGAGGCTTTCAGTGGATTCATATGCCTCAGAAGATCCTGACAGGTTGAGTTGTACAGGGACACCGAGTTCAAAGACATTGTTTGAGTTCATGGGATGGAATCAACTAGAGGAGACCGATGTGGATAAGAATAACAAGGAGAGCTATTATAAAGAAGACAGTGACTTGATTATGAGCAAACCACCACCTGCTGTAAGCACGAAGAGGTTTTCCTATTTAGAAAAGCTCGAGAAGTTGAGTGGTCTAAGAAGTCCAACAGCTCGCCATTGA

Protein Analysis

510

Amino Acids

58.3

Weight (kDa)

5.74

Isoelectric Point (pI)

53.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRONE PF03759 68 - 416 2.4e-167 PRONE (Plant-specific Rop nucleotide exchanger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010910)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1413
AarI CACCTGC 1 cut(s) 1459
Acc36I ACCTGC 1 cut(s) 1459
AccI GTMKAC 1 cut(s) 930
AclWI GGATC 3 cut(s) 501, 953, 1292
AcsI RAATTY 4 cut(s) 431, 887, 1095, 1125
AcuI CTGAAG 2 cut(s) 186, 267
AdeI CACNNNGTG 2 cut(s) 88, 925
AfaI GTAC 4 cut(s) 738, 771, 789, 1318
AfiI CCNNNNNNNGG 2 cut(s) 677, 821
AflIII ACRYGT 1 cut(s) 255
AgsI TTSAA 8 cut(s) 28, 167, 806, 1046, 1130, 1173, 1198, 1335
AjnI CCWGG 4 cut(s) 540, 549, 1090, 1158
AjuI GAANNNNNNNTTGG 2 cut(s) 227, 259
AloI GAACNNNNNNTCC 2 cut(s) 1315, 1347
Alw21I GWGCWC 2 cut(s) 873, 921
Alw26I GTCTC 4 cut(s) 283, 366, 1052, 1370
AlwI GGATC 3 cut(s) 501, 953, 1292
Ama87I CYCGRG 2 cut(s) 600, 1490
AoxI GGCC 2 cut(s) 544, 951
ApeKI GCWGC 5 cut(s) 119, 238, 320, 706, 746
ApoI RAATTY 4 cut(s) 431, 887, 1095, 1125
Asp700I GAANNNNTTC 3 cut(s) 17, 810, 1000
AspS9I GGNCC 1 cut(s) 544
AsuC2I CCSGG 1 cut(s) 66
AsuHPI GGTGA 4 cut(s) 260, 397, 851, 1030
AsuII TTCGAA 1 cut(s) 233
AsuNHI GCTAGC 1 cut(s) 830
AvaI CYCGRG 2 cut(s) 600, 1490
BanII GRGCYC 2 cut(s) 132, 357
BbsI GAAGAC 4 cut(s) 14, 258, 993, 1425
Bbv12I GWGCWC 2 cut(s) 873, 921
BbvI GCAGC 5 cut(s) 106, 225, 332, 693, 758
BccI CCATC 4 cut(s) 375, 679, 986, 1353
BciT130I CCWGG 4 cut(s) 542, 551, 1092, 1160
BclI TGATCA 1 cut(s) 418
BcnI CCSGG 1 cut(s) 66
BcoDI GTCTC 4 cut(s) 283, 366, 1052, 1370
BfaI CTAG 6 cut(s) 317, 350, 831, 884, 897, 1370
BfmI CTRYAG 2 cut(s) 120, 707
BfuAI ACCTGC 1 cut(s) 1459
BisI GCNGC 5 cut(s) 120, 239, 321, 707, 747
BlsI GCNGC 5 cut(s) 121, 240, 322, 708, 748
BmcAI AGTACT 2 cut(s) 738, 771
Bme1390I CCNGG 5 cut(s) 66, 542, 551, 1092, 1160
BmeT110I CYCGRG 2 cut(s) 600, 1490
BmgT120I GGNCC 1 cut(s) 544
BmrFI CCNGG 5 cut(s) 66, 542, 551, 1092, 1160
BmsI GCATC 3 cut(s) 332, 520, 586
BmtI GCTAGC 1 cut(s) 834
BpiI GAAGAC 4 cut(s) 14, 258, 993, 1425
BpmI CTGGAG 2 cut(s) 572, 1181
Bpu14I TTCGAA 1 cut(s) 233
BpuEI CTTGAG 2 cut(s) 750, 971
BpuMI CCSGG 1 cut(s) 66
BsaI GGTCTC 2 cut(s) 1052, 1370
BsaJI CCNNGG 3 cut(s) 288, 541, 1090
Bsc4I CCNNNNNNNGG 2 cut(s) 677, 821
Bse1I ACTGG 1 cut(s) 22
Bse3DI GCAATG 1 cut(s) 756
BseBI CCWGG 4 cut(s) 542, 551, 1092, 1160
BseDI CCNNGG 3 cut(s) 288, 541, 1090
BseGI GGATG 8 cut(s) 39, 103, 323, 694, 790, 997, 1147, 1364
BseLI CCNNNNNNNGG 2 cut(s) 677, 821
BseMI GCAATG 1 cut(s) 756
BseMII CTCAG 3 cut(s) 783, 927, 1305
BseNI ACTGG 1 cut(s) 22
BseRI GAGGAG 2 cut(s) 881, 1388
BseXI GCAGC 5 cut(s) 106, 225, 332, 693, 758
BseYI CCCAGC 1 cut(s) 50
BsgI GTGCAG 1 cut(s) 482
BshFI GGCC 2 cut(s) 546, 953
BsiHKAI GWGCWC 2 cut(s) 873, 921
BsiHKCI CYCGRG 2 cut(s) 600, 1490
BsiSI CCGG 1 cut(s) 65
BslFI GGGAC 3 cut(s) 422, 653, 1336
BslI CCNNNNNNNGG 2 cut(s) 677, 821
BsmAI GTCTC 4 cut(s) 283, 366, 1052, 1370
BsmFI GGGAC 3 cut(s) 422, 653, 1336
BsnI GGCC 2 cut(s) 546, 953
Bso31I GGTCTC 2 cut(s) 1052, 1370
BsoBI CYCGRG 2 cut(s) 600, 1490
Bsp119I TTCGAA 1 cut(s) 233
Bsp1286I GDGCHC 4 cut(s) 132, 357, 873, 921
Bsp1407I TGTACA 1 cut(s) 1316
Bsp143I GATC 6 cut(s) 72, 141, 418, 493, 945, 1297
BspANI GGCC 2 cut(s) 546, 953
BspCNI CTCAG 3 cut(s) 784, 926, 1304
BspMAI CTGCAG 2 cut(s) 124, 711
BspMI ACCTGC 1 cut(s) 1459
BspOI GCTAGC 1 cut(s) 834
BspPI GGATC 3 cut(s) 501, 953, 1292
BspQI GCTCTTC 1 cut(s) 120
BspT104I TTCGAA 1 cut(s) 233
BspTNI GGTCTC 2 cut(s) 1052, 1370
BsrDI GCAATG 1 cut(s) 756
BsrGI TGTACA 1 cut(s) 1316
BsrI ACTGG 1 cut(s) 22
BssECI CCNNGG 3 cut(s) 288, 541, 1090
BssMI GATC 6 cut(s) 72, 141, 418, 493, 945, 1297
BssT1I CCWWGG 1 cut(s) 288
Bst2UI CCWGG 4 cut(s) 542, 551, 1092, 1160
Bst4CI ACNGT 3 cut(s) 661, 1063, 1424
Bst6I CTCTTC 6 cut(s) 120, 286, 965, 1025, 1041, 1460
BstAPI GCANNNNNTGC 1 cut(s) 761
BstAUI TGTACA 1 cut(s) 1316
BstBI TTCGAA 1 cut(s) 233
BstC8I GCNNGC 4 cut(s) 401, 524, 832, 1525
BstDEI CTNAG 4 cut(s) 792, 913, 1291, 1508
BstEII GGTNACC 1 cut(s) 651
BstF5I GGATG 8 cut(s) 39, 103, 323, 694, 790, 997, 1147, 1364
BstKTI GATC 6 cut(s) 75, 144, 421, 496, 948, 1300
BstMAI GTCTC 4 cut(s) 283, 366, 1052, 1370
BstMBI GATC 6 cut(s) 72, 141, 418, 493, 945, 1297
BstMWI GCNNNNNNNGC 2 cut(s) 752, 761
BstNI CCWGG 4 cut(s) 542, 551, 1092, 1160
BstNSI RCATGY 1 cut(s) 259
BstPI GGTNACC 1 cut(s) 651
BstSCI CCNGG 5 cut(s) 64, 540, 549, 1090, 1158
BstSFI CTRYAG 2 cut(s) 120, 707
BstV1I GCAGC 5 cut(s) 106, 225, 332, 693, 758
BstV2I GAAGAC 4 cut(s) 14, 258, 993, 1425
BstX2I RGATCY 2 cut(s) 493, 1297
BstXI CCANNNNNNTGG 1 cut(s) 541
BstYI RGATCY 2 cut(s) 493, 1297
BsuRI GGCC 2 cut(s) 546, 953
BtsCI GGATG 8 cut(s) 39, 103, 323, 694, 790, 997, 1147, 1364
BtsIMutI CAGTG 2 cut(s) 1281, 1429
BveI ACCTGC 1 cut(s) 1459
Cac8I GCNNGC 4 cut(s) 401, 524, 832, 1525
Cfr13I GGNCC 1 cut(s) 544
Csp6I GTAC 4 cut(s) 737, 770, 788, 1317
CviAII CATG 8 cut(s) 256, 358, 463, 535, 901, 1005, 1204, 1354
CviQI GTAC 4 cut(s) 737, 770, 788, 1317
DdeI CTNAG 4 cut(s) 792, 913, 1291, 1508
DpnI GATC 6 cut(s) 74, 143, 420, 495, 947, 1299
DpnII GATC 6 cut(s) 72, 141, 418, 493, 945, 1297
DraIII CACNNNGTG 2 cut(s) 88, 925
Eam1104I CTCTTC 6 cut(s) 120, 286, 965, 1025, 1041, 1460
EarI CTCTTC 6 cut(s) 120, 286, 965, 1025, 1041, 1460
Eco130I CCWWGG 1 cut(s) 288
Eco147I AGGCCT 1 cut(s) 953
Eco24I GRGCYC 2 cut(s) 132, 357
Eco31I GGTCTC 2 cut(s) 1052, 1370
Eco57I CTGAAG 2 cut(s) 186, 267
Eco88I CYCGRG 2 cut(s) 600, 1490
Eco91I GGTNACC 1 cut(s) 651
EcoO65I GGTNACC 1 cut(s) 651
EcoRI GAATTC 2 cut(s) 887, 1095
EcoRII CCWGG 4 cut(s) 540, 549, 1090, 1158
EcoT14I CCWWGG 1 cut(s) 288
EcoT38I GRGCYC 2 cut(s) 132, 357
ErhI CCWWGG 1 cut(s) 288
FaeI CATG 8 cut(s) 259, 361, 466, 538, 904, 1008, 1207, 1357
FalI AAGNNNNNCTT 2 cut(s) 1177, 1209
FaqI GGGAC 3 cut(s) 422, 653, 1336
FatI CATG 8 cut(s) 255, 357, 462, 534, 900, 1004, 1203, 1353
FauNDI CATATG 1 cut(s) 1285
FbaI TGATCA 1 cut(s) 418
FblI GTMKAC 1 cut(s) 930
Fnu4HI GCNGC 5 cut(s) 120, 239, 321, 707, 747
FokI GGATG 8 cut(s) 46, 110, 310, 701, 797, 1004, 1154, 1371
FriOI GRGCYC 2 cut(s) 132, 357
Fsp4HI GCNGC 5 cut(s) 120, 239, 321, 707, 747
FspBI CTAG 6 cut(s) 317, 350, 831, 884, 897, 1370
GluI GCNGC 5 cut(s) 120, 239, 321, 707, 747
GsaI CCCAGC 1 cut(s) 54
GsuI CTGGAG 2 cut(s) 572, 1181
HaeIII GGCC 2 cut(s) 546, 953
HapII CCGG 1 cut(s) 65
Hin1II CATG 8 cut(s) 259, 361, 466, 538, 904, 1008, 1207, 1357
HincII GTYRAC 1 cut(s) 730
HindII GTYRAC 1 cut(s) 730
HindIII AAGCTT 1 cut(s) 1186
HinfI GANTC 5 cut(s) 478, 722, 806, 1280, 1363
HpaII CCGG 1 cut(s) 65
HphI GGTGA 4 cut(s) 260, 397, 851, 1030
Hpy166II GTNNAC 2 cut(s) 730, 931
Hpy188I TCNGA 7 cut(s) 205, 676, 688, 717, 778, 916, 1294
Hpy188III TCNNGA 5 cut(s) 365, 884, 1027, 1301, 1492
Hpy8I GTNNAC 2 cut(s) 730, 931
HpyAV CCTTC 7 cut(s) 210, 214, 450, 484, 671, 712, 821
HpyCH4III ACNGT 3 cut(s) 661, 1063, 1424
HpyCH4V TGCA 5 cut(s) 4, 122, 499, 563, 709
HpyF10VI GCNNNNNNNGC 2 cut(s) 752, 761
HpyF3I CTNAG 4 cut(s) 792, 913, 1291, 1508
Hsp92II CATG 8 cut(s) 259, 361, 466, 538, 904, 1008, 1207, 1357
Ksp22I TGATCA 1 cut(s) 418
Kzo9I GATC 6 cut(s) 72, 141, 418, 493, 945, 1297
LguI GCTCTTC 1 cut(s) 120
LmnI GCTCC 2 cut(s) 543, 868
Lsp1109I GCAGC 5 cut(s) 106, 225, 332, 693, 758
LweI GCATC 3 cut(s) 332, 520, 586
MaeI CTAG 6 cut(s) 317, 350, 831, 884, 897, 1370
MaeIII GTNAC 3 cut(s) 412, 651, 1424
MalI GATC 6 cut(s) 74, 143, 420, 495, 947, 1299
MboI GATC 6 cut(s) 72, 141, 418, 493, 945, 1297
MflI RGATCY 2 cut(s) 493, 1297
MhlI GDGCHC 4 cut(s) 132, 357, 873, 921
MluCI AATT 6 cut(s) 104, 212, 431, 887, 1095, 1125
MlyI GAGTC 1 cut(s) 472
MroXI GAANNNNTTC 3 cut(s) 17, 810, 1000
MseI TTAA 2 cut(s) 110, 504
MslI CAYNNNNRTG 1 cut(s) 1208
MspI CCGG 1 cut(s) 65
MspR9I CCNGG 5 cut(s) 66, 542, 551, 1092, 1160
MvaI CCWGG 4 cut(s) 542, 551, 1092, 1160
MwoI GCNNNNNNNGC 2 cut(s) 752, 761
NciI CCSGG 1 cut(s) 66
NdeI CATATG 1 cut(s) 1285
NdeII GATC 6 cut(s) 72, 141, 418, 493, 945, 1297
NheI GCTAGC 1 cut(s) 830
NlaIII CATG 8 cut(s) 259, 361, 466, 538, 904, 1008, 1207, 1357
NmuCI GTSAC 2 cut(s) 412, 1424
NspI RCATGY 1 cut(s) 259
NspV TTCGAA 1 cut(s) 233
PaeR7I CTCGAG 1 cut(s) 1490
PaqCI CACCTGC 1 cut(s) 1459
PceI AGGCCT 1 cut(s) 953
PciI ACATGT 1 cut(s) 255
PciSI GCTCTTC 1 cut(s) 120
PdmI GAANNNNTTC 3 cut(s) 17, 810, 1000
PfeI GAWTC 4 cut(s) 722, 806, 1280, 1363
PfoI TCCNGGA 1 cut(s) 1158
PkrI GCNGC 5 cut(s) 121, 240, 322, 708, 748
PleI GAGTC 1 cut(s) 472
PpsI GAGTC 1 cut(s) 472
PscI ACATGT 1 cut(s) 255
PsiI TTATAA 1 cut(s) 1413
Psp6I CCWGG 4 cut(s) 540, 549, 1090, 1158
PspEI GGTNACC 1 cut(s) 651
PspFI CCCAGC 1 cut(s) 50
PspGI CCWGG 4 cut(s) 540, 549, 1090, 1158
PspPI GGNCC 1 cut(s) 544
PstI CTGCAG 2 cut(s) 124, 711
PsuI RGATCY 2 cut(s) 493, 1297
RsaI GTAC 4 cut(s) 738, 771, 789, 1318
RsaNI GTAC 4 cut(s) 737, 770, 788, 1317
RseI CAYNNNNRTG 1 cut(s) 1208
SapI GCTCTTC 1 cut(s) 120
SaqAI TTAA 2 cut(s) 110, 504
SatI GCNGC 5 cut(s) 120, 239, 321, 707, 747
Sau3AI GATC 6 cut(s) 72, 141, 418, 493, 945, 1297
Sau96I GGNCC 1 cut(s) 544
ScaI AGTACT 2 cut(s) 738, 771
SchI GAGTC 1 cut(s) 472
ScrFI CCNGG 5 cut(s) 66, 542, 551, 1092, 1160
SduI GDGCHC 4 cut(s) 132, 357, 873, 921
SfaNI GCATC 3 cut(s) 332, 520, 586
SfcI CTRYAG 2 cut(s) 120, 707
Sfr274I CTCGAG 1 cut(s) 1490
SfuI TTCGAA 1 cut(s) 233
SlaI CTCGAG 1 cut(s) 1490
SmiMI CAYNNNNRTG 1 cut(s) 1208
SmlI CTYRAG 3 cut(s) 765, 986, 1490
SmoI CTYRAG 3 cut(s) 765, 986, 1490
Sse9I AATT 6 cut(s) 104, 212, 431, 887, 1095, 1125
SseBI AGGCCT 1 cut(s) 953
SspMI CTAG 6 cut(s) 317, 350, 831, 884, 897, 1370
StuI AGGCCT 1 cut(s) 953
StyD4I CCNGG 5 cut(s) 64, 540, 549, 1090, 1158
StyI CCWWGG 1 cut(s) 288
TaaI ACNGT 3 cut(s) 661, 1063, 1424
TaqII GACCGA 1 cut(s) 1394
TasI AATT 6 cut(s) 104, 212, 431, 887, 1095, 1125
TatI WGTACW 3 cut(s) 736, 769, 1316
TfiI GAWTC 4 cut(s) 722, 806, 1280, 1363
Tru1I TTAA 2 cut(s) 110, 504
Tru9I TTAA 2 cut(s) 110, 504
TscAI CASTG 2 cut(s) 1281, 1429
TseFI GTSAC 2 cut(s) 412, 1424
TseI GCWGC 5 cut(s) 119, 238, 320, 706, 746
Tsp45I GTSAC 2 cut(s) 412, 1424
TspDTI ATGAA 7 cut(s) 114, 233, 654, 993, 995, 1272, 1342
TspGWI ACGGA 4 cut(s) 46, 316, 400, 1265
TspRI CASTG 2 cut(s) 1281, 1429
XapI RAATTY 4 cut(s) 431, 887, 1095, 1125
XbaI TCTAGA 1 cut(s) 883
XceI RCATGY 1 cut(s) 259
XcmI CCANNNNNNNNNTGG 2 cut(s) 189, 576
XhoI CTCGAG 1 cut(s) 1490
XmiI GTMKAC 1 cut(s) 930
XmnI GAANNNNTTC 3 cut(s) 17, 810, 1000
XspI CTAG 6 cut(s) 317, 350, 831, 884, 897, 1370
ZrmI AGTACT 2 cut(s) 738, 771
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.