AT5G20670

Protein of unknown function (DUF1677)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0013373
Physical Location & Seq
Reverse (-)
6993084 .. 6993948
865 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G20670.1

Sequence Viewer

Length: 462 bp
ATGTCATCATCATCATCATCGTCAGCCACCGATACTAACACAAAGCCATCGTCTTCGTTGCCGGCGGTGGAGTCTGTCACGTGCGACACGTGCGGTTTCGCTGAAGAGTGTACGCCAGCTTACATCAACCGTGTCAAAGAACGGCATAAGGGACACTGGCTTTGTGGGCTTTGTGCGGAAGCGGTAAAAGACGAGGTGGTTCGATCTTCCACTCGTATCTCCGTCGAGGAGGCTCTCCGCCGTCACACGACGTTTTGCCACCGTTTCCGTTCTTGGAGTCCCGATGAAGAGGAAGATCCGATATCCGTCATTGGTAGGATTCTACGGCGGAGTCTTGATGGCTCTCCACGGAGAACCAATACGAGGACAAGCTCGAGTGGAGCTTTGCCGGGGATCGACGGCGTAGAGTCACGACGGTCGCTTCTCCGATCTGGGAGTTGTTTCCCGTCTCTCTCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1677

Protein Analysis

153

Amino Acids

16.69

Weight (kDa)

8.22

Isoelectric Point (pI)

95.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1677 PF07911 23 - 113 1e-34 Protein of unknown function (DUF1677)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013373)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20670
fragaria_vesca FvH4_1g08900
malus_domestica MD02G1094400.v1.1 MD15G1219300.v1.1
prunus_persica Prupe.7G196600_v2.0.a1
pyrus_communis pycom02g07470 pycom15g19460
rosa_chinensis RchiOBHm_Chr2g0095361 RchiOBHm_Chr6g0253361
rosa_laevigata RLG00000016558
rosa_multiflora Rmu_ssc0000183.1_g000036
rosa_roxburghii Rroxscaffold_2G00146440
rosa_rugosa Rorug02G0050000
rosa_samantha Rh2AG098200 Rh2BG099400 Rh2CG101400 Rh2DG099000
rosa_wichuraiana Rw2G007410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 65, 93, 176, 182, 238, 328
AclWI GGATC 2 cut(s) 290, 401
AcuI CTGAAG 1 cut(s) 123
AcvI CACGTG 2 cut(s) 81, 90
AfaI GTAC 1 cut(s) 112
AfiI CCNNNNNNNGG 1 cut(s) 363
AflIII ACRYGT 1 cut(s) 87
AluBI AGCT 3 cut(s) 119, 372, 383
AluI AGCT 3 cut(s) 119, 372, 383
Alw26I GTCTC 1 cut(s) 453
AlwI GGATC 2 cut(s) 290, 401
Ama87I CYCGRG 1 cut(s) 373
ArsI GACNNNNNNTTYG 4 cut(s) 35, 67, 144, 176
AsuC2I CCSGG 1 cut(s) 390
AvaI CYCGRG 1 cut(s) 373
BbrPI CACGTG 2 cut(s) 81, 90
BbsI GAAGAC 1 cut(s) 45
BccI CCATC 2 cut(s) 55, 332
BceAI ACGGC 4 cut(s) 158, 225, 341, 415
BcnI CCSGG 1 cut(s) 390
BcoDI GTCTC 1 cut(s) 453
Bme1390I CCNGG 1 cut(s) 390
BmeT110I CYCGRG 1 cut(s) 373
BmrFI CCNGG 1 cut(s) 390
BpiI GAAGAC 1 cut(s) 45
BpuMI CCSGG 1 cut(s) 390
BsaAI YACGTR 2 cut(s) 81, 90
BsaJI CCNNGG 2 cut(s) 347, 389
Bsc4I CCNNNNNNNGG 1 cut(s) 363
Bse118I RCCGGY 1 cut(s) 61
Bse1I ACTGG 1 cut(s) 161
BseDI CCNNGG 2 cut(s) 347, 389
BseLI CCNNNNNNNGG 1 cut(s) 363
BseNI ACTGG 1 cut(s) 161
BseRI GAGGAG 1 cut(s) 242
Bsh1285I CGRYCG 1 cut(s) 419
BsiEI CGRYCG 1 cut(s) 419
BsiHKCI CYCGRG 1 cut(s) 373
BsiSI CCGG 2 cut(s) 62, 389
BslFI GGGAC 2 cut(s) 165, 264
BslI CCNNNNNNNGG 1 cut(s) 363
BsmAI GTCTC 1 cut(s) 453
BsmBI CGTCTC 1 cut(s) 453
BsmFI GGGAC 2 cut(s) 165, 264
BsoBI CYCGRG 1 cut(s) 373
Bsp143I GATC 4 cut(s) 203, 295, 393, 428
BspACI CCGC 6 cut(s) 65, 93, 176, 182, 238, 328
BspPI GGATC 2 cut(s) 290, 401
BsrFI RCCGGY 1 cut(s) 61
BsrI ACTGG 1 cut(s) 161
BssAI RCCGGY 1 cut(s) 61
BssECI CCNNGG 2 cut(s) 347, 389
BssMI GATC 4 cut(s) 203, 295, 393, 428
Bst4CI ACNGT 3 cut(s) 131, 263, 417
Bst6I CTCTTC 2 cut(s) 99, 282
BstBAI YACGTR 2 cut(s) 81, 90
BstC8I GCNNGC 2 cut(s) 63, 117
BstDSI CCRYGG 1 cut(s) 347
BstKTI GATC 4 cut(s) 206, 298, 396, 431
BstMAI GTCTC 1 cut(s) 453
BstMBI GATC 4 cut(s) 203, 295, 393, 428
BstMCI CGRYCG 1 cut(s) 419
BstMWI GCNNNNNNNGC 2 cut(s) 90, 166
BstSCI CCNGG 1 cut(s) 388
BstV2I GAAGAC 1 cut(s) 45
BstX2I RGATCY 1 cut(s) 295
BstYI RGATCY 1 cut(s) 295
BtgI CCRYGG 1 cut(s) 347
BtsIMutI CAGTG 1 cut(s) 154
Cac8I GCNNGC 2 cut(s) 63, 117
Cfr10I RCCGGY 1 cut(s) 61
Csp6I GTAC 1 cut(s) 111
CviJI RGCY 9 cut(s) 26, 46, 119, 160, 169, 233, 342, 372, 383
CviKI_1 RGCY 9 cut(s) 26, 46, 119, 160, 169, 233, 342, 372, 383
CviQI GTAC 1 cut(s) 111
DpnI GATC 4 cut(s) 205, 297, 395, 430
DpnII GATC 4 cut(s) 203, 295, 393, 428
Eam1104I CTCTTC 2 cut(s) 99, 282
EarI CTCTTC 2 cut(s) 99, 282
EciI GGCGGA 2 cut(s) 227, 343
Eco32I GATATC 1 cut(s) 303
Eco57I CTGAAG 1 cut(s) 123
Eco72I CACGTG 2 cut(s) 81, 90
Eco88I CYCGRG 1 cut(s) 373
EcoRV GATATC 1 cut(s) 303
Esp3I CGTCTC 1 cut(s) 453
FaiI YATR 1 cut(s) 147
FaqI GGGAC 2 cut(s) 165, 264
HapII CCGG 2 cut(s) 62, 389
HinfI GANTC 5 cut(s) 71, 277, 319, 331, 407
HpaII CCGG 2 cut(s) 62, 389
Hpy166II GTNNAC 1 cut(s) 111
Hpy188I TCNGA 2 cut(s) 300, 428
Hpy188III TCNNGA 3 cut(s) 281, 335, 411
Hpy8I GTNNAC 1 cut(s) 111
Hpy99I CGWCG 4 cut(s) 227, 253, 401, 417
HpyCH4III ACNGT 3 cut(s) 131, 263, 417
HpyCH4IV ACGT 3 cut(s) 80, 89, 251
HpyF10VI GCNNNNNNNGC 2 cut(s) 90, 166
HpySE526I ACGT 3 cut(s) 80, 89, 251
KroI GCCGGC 1 cut(s) 61
KroNI GCCGGC 1 cut(s) 63
Kzo9I GATC 4 cut(s) 203, 295, 393, 428
LmnI GCTCC 1 cut(s) 380
LpnPI CCDG 5 cut(s) 75, 129, 142, 402, 417
MaeII ACGT 3 cut(s) 80, 89, 251
MaeIII GTNAC 3 cut(s) 76, 242, 408
MalI GATC 4 cut(s) 205, 297, 395, 430
MboI GATC 4 cut(s) 203, 295, 393, 428
MboII GAAGA 5 cut(s) 45, 116, 198, 299, 305
MflI RGATCY 1 cut(s) 295
MlyI GAGTC 4 cut(s) 80, 286, 340, 416
MnlI CCTC 5 cut(s) 187, 220, 223, 283, 357
MroNI GCCGGC 1 cut(s) 61
MspI CCGG 2 cut(s) 62, 389
MspR9I CCNGG 1 cut(s) 390
MwoI GCNNNNNNNGC 2 cut(s) 90, 166
NaeI GCCGGC 1 cut(s) 63
NciI CCSGG 1 cut(s) 390
NdeII GATC 4 cut(s) 203, 295, 393, 428
NgoMIV GCCGGC 1 cut(s) 61
NmuCI GTSAC 3 cut(s) 76, 242, 408
PaeR7I CTCGAG 1 cut(s) 373
PcsI WCGNNNNNNNCGW 1 cut(s) 86
PdiI GCCGGC 1 cut(s) 63
PfeI GAWTC 1 cut(s) 319
PleI GAGTC 4 cut(s) 79, 285, 339, 415
PmaCI CACGTG 2 cut(s) 81, 90
PmlI CACGTG 2 cut(s) 81, 90
PpsI GAGTC 4 cut(s) 79, 285, 339, 415
Ppu21I YACGTR 2 cut(s) 81, 90
PspCI CACGTG 2 cut(s) 81, 90
PspXI VCTCGAGB 1 cut(s) 373
PsuI RGATCY 1 cut(s) 295
RsaI GTAC 1 cut(s) 112
RsaNI GTAC 1 cut(s) 111
Sau3AI GATC 4 cut(s) 203, 295, 393, 428
SchI GAGTC 4 cut(s) 80, 286, 340, 416
ScrFI CCNGG 1 cut(s) 390
SetI ASST 7 cut(s) 83, 92, 121, 198, 254, 374, 385
Sfr274I CTCGAG 1 cut(s) 373
SlaI CTCGAG 1 cut(s) 373
SmlI CTYRAG 1 cut(s) 373
SmoI CTYRAG 1 cut(s) 373
SsiI CCGC 6 cut(s) 65, 93, 176, 182, 238, 328
StyD4I CCNGG 1 cut(s) 388
TaaI ACNGT 3 cut(s) 131, 263, 417
TaiI ACGT 3 cut(s) 83, 92, 254
TaqI TCGA 4 cut(s) 202, 225, 374, 396
TfiI GAWTC 1 cut(s) 319
TscAI CASTG 1 cut(s) 161
TseFI GTSAC 3 cut(s) 76, 242, 408
Tsp45I GTSAC 3 cut(s) 76, 242, 408
TspDTI ATGAA 1 cut(s) 300
TspGWI ACGGA 4 cut(s) 211, 257, 295, 364
TspRI CASTG 1 cut(s) 161
XhoI CTCGAG 1 cut(s) 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.