pycom02g07470

Protein of unknown function (DUF1677)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0013373
Physical Location & Seq
Reverse (-)
5225848 .. 5226297
450 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g07470.1

Sequence Viewer

Length: 450 bp
ATGGCTATAACAGGCACAGACTCCCAGCAGCAAAGCTCAACTAAACCATCCCCACTTCCTCCACCAGTCGAAGTCCAGTGCGTAAAATGCCACTCCTGCGGGTTCACAGAGGATTGCACCCCAGCCTACATCTCCCGCGTCCGAGACCGCTACCAGGGCCGTTGGATTTGCGGGCTCTGCGTCGAGGCGGTAAAAGACGAAGTGGTGCGATCAGATAGGCTCATCTCCACGGAAGAGGCCCTGAACCGCCACATCAATTTCTGCAAAAAGTTCCGGTCGCGGAAAGAAACAGAGCACCCCATCTTCGCCATGGGTCGGATTTTCCGGCGGAGCTTGGATACTCCGAGAGCCCTGAGGTCAAATTCCGATAGTAACCTAGGGGAAGTTGAAGGGGTTCGCTGGCCGCCGCTTGTTCGATCGGGAAGTTGCTTCCCTTCTCTGTCTAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1677

Protein Analysis

150

Amino Acids

16.86

Weight (kDa)

9.04

Isoelectric Point (pI)

79.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1677 PF07911 25 - 114 2.7e-36 Protein of unknown function (DUF1677)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013373)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20670
fragaria_vesca FvH4_1g08900
malus_domestica MD02G1094400.v1.1 MD15G1219300.v1.1
prunus_persica Prupe.7G196600_v2.0.a1
pyrus_communis pycom02g07470 pycom15g19460
rosa_chinensis RchiOBHm_Chr2g0095361 RchiOBHm_Chr6g0253361
rosa_laevigata RLG00000016558
rosa_multiflora Rmu_ssc0000183.1_g000036
rosa_roxburghii Rroxscaffold_2G00146440
rosa_rugosa Rorug02G0050000
rosa_samantha Rh2AG098200 Rh2BG099400 Rh2CG101400 Rh2DG099000
rosa_wichuraiana Rw2G007410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 138, 280
AcoI YGGCCR 1 cut(s) 401
AcsI RAATTY 1 cut(s) 361
AfiI CCNNNNNNNGG 2 cut(s) 154, 315
AgsI TTSAA 1 cut(s) 389
AjnI CCWGG 1 cut(s) 153
AluBI AGCT 2 cut(s) 36, 333
AluI AGCT 2 cut(s) 36, 333
Alw21I GWGCWC 1 cut(s) 297
Alw26I GTCTC 1 cut(s) 138
AoxI GGCC 3 cut(s) 157, 237, 401
ApeKI GCWGC 1 cut(s) 28
ApoI RAATTY 1 cut(s) 361
Asp700I GAANNNNTTC 1 cut(s) 393
AspA2I CCTAGG 1 cut(s) 376
AspS9I GGNCC 2 cut(s) 157, 238
AvrII CCTAGG 1 cut(s) 376
AxyI CCTNAGG 1 cut(s) 353
BanII GRGCYC 2 cut(s) 177, 352
Bbv12I GWGCWC 1 cut(s) 297
BbvI GCAGC 1 cut(s) 40
BccI CCATC 2 cut(s) 55, 308
BceAI ACGGC 1 cut(s) 144
BciT130I CCWGG 1 cut(s) 155
BciVI GTATCC 1 cut(s) 331
BcoDI GTCTC 1 cut(s) 138
BfaI CTAG 2 cut(s) 377, 444
BfuI GTATCC 1 cut(s) 331
BisI GCNGC 3 cut(s) 29, 404, 407
BlnI CCTAGG 1 cut(s) 376
BlsI GCNGC 3 cut(s) 30, 405, 408
Bme1390I CCNGG 1 cut(s) 155
BmgT120I GGNCC 2 cut(s) 157, 238
BmrFI CCNGG 1 cut(s) 155
BsaI GGTCTC 1 cut(s) 138
BsaJI CCNNGG 4 cut(s) 154, 228, 309, 376
BsaWI WCCGGW 1 cut(s) 273
Bsc4I CCNNNNNNNGG 2 cut(s) 154, 315
Bse1I ACTGG 2 cut(s) 65, 76
Bse21I CCTNAGG 1 cut(s) 353
BseBI CCWGG 1 cut(s) 155
BseDI CCNNGG 4 cut(s) 154, 228, 309, 376
BseGI GGATG 1 cut(s) 47
BseLI CCNNNNNNNGG 2 cut(s) 154, 315
BseMII CTCAG 1 cut(s) 344
BseNI ACTGG 2 cut(s) 65, 76
BseXI GCAGC 1 cut(s) 40
BseYI CCCAGC 2 cut(s) 24, 121
Bsh1236I CGCG 2 cut(s) 138, 280
Bsh1285I CGRYCG 2 cut(s) 278, 419
BshFI GGCC 3 cut(s) 159, 239, 403
BsiEI CGRYCG 2 cut(s) 278, 419
BsiHKAI GWGCWC 1 cut(s) 297
BsiSI CCGG 2 cut(s) 274, 325
BslI CCNNNNNNNGG 2 cut(s) 154, 315
BsmAI GTCTC 1 cut(s) 138
BsnI GGCC 3 cut(s) 159, 239, 403
Bso31I GGTCTC 1 cut(s) 138
Bsp1286I GDGCHC 3 cut(s) 177, 297, 352
Bsp143I GATC 2 cut(s) 209, 416
Bsp19I CCATGG 1 cut(s) 309
BspANI GGCC 3 cut(s) 159, 239, 403
BspCNI CTCAG 1 cut(s) 345
BspFNI CGCG 2 cut(s) 138, 280
BspTNI GGTCTC 1 cut(s) 138
BsrI ACTGG 2 cut(s) 65, 76
BssECI CCNNGG 4 cut(s) 154, 228, 309, 376
BssMI GATC 2 cut(s) 209, 416
BssT1I CCWWGG 2 cut(s) 309, 376
Bst2UI CCWGG 1 cut(s) 155
Bst6I CTCTTC 1 cut(s) 228
BstC8I GCNNGC 2 cut(s) 173, 401
BstDEI CTNAG 1 cut(s) 353
BstDSI CCRYGG 2 cut(s) 228, 309
BstF5I GGATG 1 cut(s) 47
BstFNI CGCG 2 cut(s) 138, 280
BstKTI GATC 2 cut(s) 212, 419
BstMAI GTCTC 1 cut(s) 138
BstMBI GATC 2 cut(s) 209, 416
BstMCI CGRYCG 2 cut(s) 278, 419
BstMWI GCNNNNNNNGC 4 cut(s) 87, 96, 156, 177
BstNI CCWGG 1 cut(s) 155
BstSCI CCNGG 1 cut(s) 153
BstUI CGCG 2 cut(s) 138, 280
BstV1I GCAGC 1 cut(s) 40
Bsu36I CCTNAGG 1 cut(s) 353
BsuI GTATCC 1 cut(s) 331
BsuRI GGCC 3 cut(s) 159, 239, 403
BtgI CCRYGG 2 cut(s) 228, 309
BtsCI GGATG 1 cut(s) 47
BtsIMutI CAGTG 1 cut(s) 83
Cac8I GCNNGC 2 cut(s) 173, 401
Cfr13I GGNCC 2 cut(s) 157, 238
CseI GACGC 2 cut(s) 127, 169
CviAII CATG 1 cut(s) 310
DdeI CTNAG 1 cut(s) 353
DpnI GATC 2 cut(s) 211, 418
DpnII GATC 2 cut(s) 209, 416
EaeI YGGCCR 1 cut(s) 401
Eam1104I CTCTTC 1 cut(s) 228
EarI CTCTTC 1 cut(s) 228
EciI GGCGGA 1 cut(s) 343
Eco130I CCWWGG 2 cut(s) 309, 376
Eco24I GRGCYC 2 cut(s) 177, 352
Eco31I GGTCTC 1 cut(s) 138
Eco81I CCTNAGG 1 cut(s) 353
EcoO109I RGGNCCY 1 cut(s) 238
EcoRII CCWGG 1 cut(s) 153
EcoT14I CCWWGG 2 cut(s) 309, 376
EcoT38I GRGCYC 2 cut(s) 177, 352
ErhI CCWWGG 2 cut(s) 309, 376
FaeI CATG 1 cut(s) 313
FaiI YATR 2 cut(s) 8, 311
FatI CATG 1 cut(s) 309
FauI CCCGC 3 cut(s) 92, 143, 164
Fnu4HI GCNGC 3 cut(s) 29, 404, 407
FokI GGATG 1 cut(s) 34
FriOI GRGCYC 2 cut(s) 177, 352
Fsp4HI GCNGC 3 cut(s) 29, 404, 407
FspBI CTAG 2 cut(s) 377, 444
GluI GCNGC 3 cut(s) 29, 404, 407
GsaI CCCAGC 2 cut(s) 28, 125
HaeIII GGCC 3 cut(s) 159, 239, 403
HapII CCGG 2 cut(s) 274, 325
HgaI GACGC 2 cut(s) 127, 169
Hin1II CATG 1 cut(s) 313
HinfI GANTC 1 cut(s) 20
HpaII CCGG 2 cut(s) 274, 325
Hpy166II GTNNAC 1 cut(s) 105
Hpy188I TCNGA 5 cut(s) 143, 214, 318, 345, 367
Hpy188III TCNNGA 1 cut(s) 420
Hpy8I GTNNAC 1 cut(s) 105
Hpy99I CGWCG 1 cut(s) 185
HpyAV CCTTC 2 cut(s) 383, 444
HpyCH4V TGCA 2 cut(s) 117, 264
HpyF10VI GCNNNNNNNGC 4 cut(s) 87, 96, 156, 177
HpyF3I CTNAG 1 cut(s) 353
Hsp92II CATG 1 cut(s) 313
Kzo9I GATC 2 cut(s) 209, 416
LmnI GCTCC 1 cut(s) 330
Lsp1109I GCAGC 1 cut(s) 40
MaeI CTAG 2 cut(s) 377, 444
MaeIII GTNAC 1 cut(s) 371
MalI GATC 2 cut(s) 211, 418
MboI GATC 2 cut(s) 209, 416
MboII GAAGA 2 cut(s) 245, 295
MhlI GDGCHC 3 cut(s) 177, 297, 352
MluCI AATT 2 cut(s) 256, 361
MlyI GAGTC 1 cut(s) 14
MmeI TCCRAC 2 cut(s) 143, 296
MnlI CCTC 5 cut(s) 69, 103, 178, 229, 348
MroXI GAANNNNTTC 1 cut(s) 393
MspI CCGG 2 cut(s) 274, 325
MspR9I CCNGG 1 cut(s) 155
MvaI CCWGG 1 cut(s) 155
MvnI CGCG 2 cut(s) 138, 280
MwoI GCNNNNNNNGC 4 cut(s) 87, 96, 156, 177
NcoI CCATGG 1 cut(s) 309
NdeII GATC 2 cut(s) 209, 416
NlaIII CATG 1 cut(s) 313
PdmI GAANNNNTTC 1 cut(s) 393
PkrI GCNGC 3 cut(s) 30, 405, 408
Ple19I CGATCG 1 cut(s) 419
PleI GAGTC 1 cut(s) 14
PpsI GAGTC 1 cut(s) 14
Psp6I CCWGG 1 cut(s) 153
PspFI CCCAGC 2 cut(s) 24, 121
PspGI CCWGG 1 cut(s) 153
PspPI GGNCC 2 cut(s) 157, 238
PvuI CGATCG 1 cut(s) 419
SatI GCNGC 3 cut(s) 29, 404, 407
Sau3AI GATC 2 cut(s) 209, 416
Sau96I GGNCC 2 cut(s) 157, 238
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 1 cut(s) 155
SduI GDGCHC 3 cut(s) 177, 297, 352
SetI ASST 5 cut(s) 38, 335, 359, 378, 449
Sse9I AATT 2 cut(s) 256, 361
SspMI CTAG 2 cut(s) 377, 444
StyD4I CCNGG 1 cut(s) 153
StyI CCWWGG 2 cut(s) 309, 376
TaqI TCGA 3 cut(s) 69, 183, 415
TasI AATT 2 cut(s) 256, 361
TauI GCSGC 2 cut(s) 406, 409
TscAI CASTG 1 cut(s) 83
TseI GCWGC 1 cut(s) 28
TspGWI ACGGA 1 cut(s) 245
TspRI CASTG 1 cut(s) 83
XapI RAATTY 1 cut(s) 361
XcmI CCANNNNNNNNNTGG 1 cut(s) 307
XmaJI CCTAGG 1 cut(s) 376
XmnI GAANNNNTTC 1 cut(s) 393
XspI CTAG 2 cut(s) 377, 444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.