RchiOBHm_Chr6g0253361

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0013373
Physical Location & Seq
Forward (+)
8490567 .. 8494432
3866 bp
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UTR
Exon/CDS
Intron
PRQ22718

Sequence Viewer

Length: 489 bp
ATGTATACTTTTTTTTTAAAGTGGGTATTGTCCAATGTCCATAGTCGGATAGTCCAGACTCCAGAAGCCCAGGCCAGCCAAAGTAACTCCCTACTCCCGACACTTTGTCTTCATCTCCGTCAATTTCAGATCCAGCCTCAATTTCCTGAAGGAATAACTCATTTCCCAATCTTCCATTCTCGGATTCTCCCAAGCCACAATCTCTTCAGAAATCATTCCTCCGGTGCATGGCCATTTCTTAATTTCCTCTTCAACCTCTTGATTCAAGCAAATTCTGGTTCATGCTTCCACTCATCGACTGATCGACTATGGGCTATTGAGCTATTCAAAGTTTCGAACTGGAGAATCGTCTCTCACAGTCTCACTCTCTCCTCCTCCACCAGTGCCGCCTGCGGGTCTAATTCTAGCTCCTCTCTCGGTGGTGTTGAGAGGGTTGGTGGGCTGGCGCTGGTTAGGTCCGACAGTTGCTTCCCTACTCTCAATAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

162

Amino Acids

18.02

Weight (kDa)

9.24

Isoelectric Point (pI)

52.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013373)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20670
fragaria_vesca FvH4_1g08900
malus_domestica MD02G1094400.v1.1 MD15G1219300.v1.1
prunus_persica Prupe.7G196600_v2.0.a1
pyrus_communis pycom02g07470 pycom15g19460
rosa_chinensis RchiOBHm_Chr2g0095361 RchiOBHm_Chr6g0253361
rosa_laevigata RLG00000016558
rosa_multiflora Rmu_ssc0000183.1_g000036
rosa_roxburghii Rroxscaffold_2G00146440
rosa_rugosa Rorug02G0050000
rosa_samantha Rh2AG098200 Rh2BG099400 Rh2CG101400 Rh2DG099000
rosa_wichuraiana Rw2G007410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 5
AciI CCGC 2 cut(s) 387, 393
AclWI GGATC 1 cut(s) 124
AcoI YGGCCR 1 cut(s) 230
AcsI RAATTY 1 cut(s) 271
AcuI CTGAAG 2 cut(s) 168, 190
AfiI CCNNNNNNNGG 2 cut(s) 228, 393
AgsI TTSAA 3 cut(s) 253, 266, 328
AhdI GACNNNNNGTC 1 cut(s) 105
AjnI CCWGG 1 cut(s) 69
AjuI GAANNNNNNNTTGG 2 cut(s) 160, 192
AluBI AGCT 3 cut(s) 322, 408, 486
AluI AGCT 3 cut(s) 322, 408, 486
Alw26I GTCTC 2 cut(s) 355, 365
AlwI GGATC 1 cut(s) 124
AoxI GGCC 2 cut(s) 72, 230
ApoI RAATTY 1 cut(s) 271
Asp700I GAANNNNTTC 1 cut(s) 214
AspLEI GCGC 1 cut(s) 448
AspS9I GGNCC 1 cut(s) 456
AsuII TTCGAA 1 cut(s) 335
AvaII GGWCC 1 cut(s) 456
BalI TGGCCA 1 cut(s) 232
BbsI GAAGAC 1 cut(s) 101
BciT130I CCWGG 1 cut(s) 71
BcoDI GTCTC 2 cut(s) 355, 365
BfaI CTAG 1 cut(s) 405
BfoI RGCGCY 1 cut(s) 449
BisI GCNGC 1 cut(s) 387
BlsI GCNGC 1 cut(s) 388
Bme1390I CCNGG 1 cut(s) 71
Bme18I GGWCC 1 cut(s) 456
BmeRI GACNNNNNGTC 1 cut(s) 105
BmgT120I GGNCC 1 cut(s) 456
BmrFI CCNGG 1 cut(s) 71
BpiI GAAGAC 1 cut(s) 101
BpmI CTGGAG 2 cut(s) 45, 361
Bpu14I TTCGAA 1 cut(s) 335
BsaJI CCNNGG 1 cut(s) 69
BsaWI WCCGGW 1 cut(s) 221
Bsc4I CCNNNNNNNGG 2 cut(s) 228, 393
Bse1I ACTGG 2 cut(s) 344, 381
BseBI CCWGG 1 cut(s) 71
BseDI CCNNGG 1 cut(s) 69
BseLI CCNNNNNNNGG 2 cut(s) 228, 393
BseNI ACTGG 2 cut(s) 344, 381
BseRI GAGGAG 3 cut(s) 361, 364, 400
BshFI GGCC 2 cut(s) 74, 232
BsiSI CCGG 1 cut(s) 222
BslI CCNNNNNNNGG 2 cut(s) 228, 393
BsmAI GTCTC 2 cut(s) 355, 365
BsmBI CGTCTC 1 cut(s) 355
BsnI GGCC 2 cut(s) 74, 232
Bsp119I TTCGAA 1 cut(s) 335
Bsp143I GATC 2 cut(s) 129, 301
BspACI CCGC 2 cut(s) 387, 393
BspANI GGCC 2 cut(s) 74, 232
BspPI GGATC 1 cut(s) 124
BspT104I TTCGAA 1 cut(s) 335
BsrI ACTGG 2 cut(s) 344, 381
BssECI CCNNGG 1 cut(s) 69
BssMI GATC 2 cut(s) 129, 301
BssNAI GTATAC 1 cut(s) 6
Bst1107I GTATAC 1 cut(s) 6
Bst2UI CCWGG 1 cut(s) 71
Bst4CI ACNGT 2 cut(s) 359, 464
Bst6I CTCTTC 2 cut(s) 209, 254
BstBI TTCGAA 1 cut(s) 335
BstC8I GCNNGC 3 cut(s) 76, 391, 444
BstH2I RGCGCY 1 cut(s) 449
BstHHI GCGC 1 cut(s) 448
BstKTI GATC 2 cut(s) 132, 304
BstMAI GTCTC 2 cut(s) 355, 365
BstMBI GATC 2 cut(s) 129, 301
BstNI CCWGG 1 cut(s) 71
BstSCI CCNGG 1 cut(s) 69
BstV2I GAAGAC 1 cut(s) 101
BstX2I RGATCY 1 cut(s) 129
BstYI RGATCY 1 cut(s) 129
BstZ17I GTATAC 1 cut(s) 6
BsuRI GGCC 2 cut(s) 74, 232
BtsIMutI CAGTG 1 cut(s) 388
Cac8I GCNNGC 3 cut(s) 76, 391, 444
CfoI GCGC 1 cut(s) 448
Cfr13I GGNCC 1 cut(s) 456
CviAII CATG 2 cut(s) 228, 282
DpnI GATC 2 cut(s) 131, 303
DpnII GATC 2 cut(s) 129, 301
DraI TTTAAA 1 cut(s) 18
DriI GACNNNNNGTC 1 cut(s) 105
EaeI YGGCCR 1 cut(s) 230
Eam1104I CTCTTC 2 cut(s) 209, 254
Eam1105I GACNNNNNGTC 1 cut(s) 105
EarI CTCTTC 2 cut(s) 209, 254
Eco47I GGWCC 1 cut(s) 456
Eco57I CTGAAG 2 cut(s) 168, 190
EcoRII CCWGG 1 cut(s) 69
Esp3I CGTCTC 1 cut(s) 355
FaeI CATG 2 cut(s) 231, 285
FaiI YATR 5 cut(s) 6, 42, 229, 283, 310
FatI CATG 2 cut(s) 227, 281
FauI CCCGC 1 cut(s) 386
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 1 cut(s) 387
Fsp4HI GCNGC 1 cut(s) 387
FspBI CTAG 1 cut(s) 405
GlaI GCGC 1 cut(s) 447
GluI GCNGC 1 cut(s) 387
GsuI CTGGAG 2 cut(s) 45, 361
HaeII RGCGCY 1 cut(s) 449
HaeIII GGCC 2 cut(s) 74, 232
HapII CCGG 1 cut(s) 222
HhaI GCGC 1 cut(s) 448
Hin1II CATG 2 cut(s) 231, 285
Hin6I GCGC 1 cut(s) 446
HinP1I GCGC 1 cut(s) 446
HinfI GANTC 4 cut(s) 58, 184, 262, 345
HpaII CCGG 1 cut(s) 222
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 5 cut(s) 48, 129, 183, 209, 460
Hpy188III TCNNGA 5 cut(s) 55, 62, 97, 146, 259
Hpy8I GTNNAC 1 cut(s) 6
HpyAV CCTTC 1 cut(s) 143
HpyCH4III ACNGT 2 cut(s) 359, 464
HpyCH4V TGCA 1 cut(s) 227
Hsp92II CATG 2 cut(s) 231, 285
HspAI GCGC 1 cut(s) 446
Kzo9I GATC 2 cut(s) 129, 301
LmnI GCTCC 1 cut(s) 413
MaeI CTAG 1 cut(s) 405
MaeIII GTNAC 1 cut(s) 83
MalI GATC 2 cut(s) 131, 303
MboI GATC 2 cut(s) 129, 301
MboII GAAGA 4 cut(s) 101, 163, 196, 241
MflI RGATCY 1 cut(s) 129
MlsI TGGCCA 1 cut(s) 232
MluCI AATT 5 cut(s) 122, 140, 241, 271, 400
MluNI TGGCCA 1 cut(s) 232
MlyI GAGTC 1 cut(s) 52
MmeI TCCRAC 2 cut(s) 26, 483
MnlI CCTC 8 cut(s) 147, 229, 257, 266, 382, 385, 421, 423
Mox20I TGGCCA 1 cut(s) 232
MroXI GAANNNNTTC 1 cut(s) 214
MscI TGGCCA 1 cut(s) 232
MseI TTAA 2 cut(s) 17, 240
Msp20I TGGCCA 1 cut(s) 232
MspI CCGG 1 cut(s) 222
MspR9I CCNGG 1 cut(s) 71
MvaI CCWGG 1 cut(s) 71
NdeII GATC 2 cut(s) 129, 301
NlaIII CATG 2 cut(s) 231, 285
NspV TTCGAA 1 cut(s) 335
PdmI GAANNNNTTC 1 cut(s) 214
PfeI GAWTC 3 cut(s) 184, 262, 345
PkrI GCNGC 1 cut(s) 388
PleI GAGTC 1 cut(s) 52
PpsI GAGTC 1 cut(s) 52
Psp6I CCWGG 1 cut(s) 69
PspGI CCWGG 1 cut(s) 69
PspPI GGNCC 1 cut(s) 456
PsuI RGATCY 1 cut(s) 129
SaqAI TTAA 2 cut(s) 17, 240
SatI GCNGC 1 cut(s) 387
Sau3AI GATC 2 cut(s) 129, 301
Sau96I GGNCC 1 cut(s) 456
SchI GAGTC 1 cut(s) 52
ScrFI CCNGG 1 cut(s) 71
SetI ASST 5 cut(s) 258, 324, 410, 458, 488
SfuI TTCGAA 1 cut(s) 335
SinI GGWCC 1 cut(s) 456
Sse9I AATT 5 cut(s) 122, 140, 241, 271, 400
SsiI CCGC 2 cut(s) 387, 393
SspMI CTAG 1 cut(s) 405
StyD4I CCNGG 1 cut(s) 69
TaaI ACNGT 2 cut(s) 359, 464
TaqI TCGA 3 cut(s) 296, 304, 335
TasI AATT 5 cut(s) 122, 140, 241, 271, 400
TauI GCSGC 1 cut(s) 389
TfiI GAWTC 3 cut(s) 184, 262, 345
Tru1I TTAA 2 cut(s) 17, 240
Tru9I TTAA 2 cut(s) 17, 240
TscAI CASTG 1 cut(s) 388
TspDTI ATGAA 2 cut(s) 101, 270
TspGWI ACGGA 1 cut(s) 107
TspRI CASTG 1 cut(s) 388
VpaK11BI GGWCC 1 cut(s) 456
XapI RAATTY 1 cut(s) 271
XmiI GTMKAC 1 cut(s) 5
XmnI GAANNNNTTC 1 cut(s) 214
XspI CTAG 1 cut(s) 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.